RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 SFRP1Q8N474 314 aa11.46□□□□□ -0.57
NPHP4-204ENST00000460696 DDHD1Q8NEL9 900 aa11.46□□□□□ -0.57
NPHP4-204ENST00000460696 OR4F6Q8NGB9 312 aa11.46□□□□□ -0.57
NPHP4-204ENST00000460696 OR13J1Q8NGT2 312 aa11.46□□□□□ -0.57
NPHP4-204ENST00000460696 LZICQ8WZA0 190 aa11.46□□□□□ -0.57
NPHP4-204ENST00000460696 ACAT2Q9BWD1 397 aa11.46□□□□□ -0.57
NPHP4-204ENST00000460696 DERL2Q9GZP9 239 aa11.46□□□□□ -0.57
NPHP4-204ENST00000460696 BRD9Q9H8M2 597 aa11.46□□□□□ -0.57
NPHP4-204ENST00000460696 MIEF1Q9NQG6 463 aa11.46□□□□□ -0.57
NPHP4-204ENST00000460696 TREX1Q9NSU2 369 aa11.46□□□□□ -0.57
NPHP4-204ENST00000460696 ABCB8Q9NUT2 735 aa11.46□□□□□ -0.57
NPHP4-204ENST00000460696 KCTD5Q9NXV2 234 aa11.46□□□□□ -0.57
NPHP4-204ENST00000460696 SMPD3Q9NY59 655 aaPredicted RBP11.46□□□□□ -0.57
NPHP4-204ENST00000460696 DMTF1Q9Y222 760 aa11.46□□□□□ -0.57
NPHP4-204ENST00000460696 SHROOM3Q8TF72 1996 aa11.46□□□□□ -0.57
NPHP4-204ENST00000460696 TTC3P53804 2025 aa11.46□□□□□ -0.57
NPHP4-204ENST00000460696 ARRB2P32121 409 aa11.46□□□□□ -0.57
NPHP4-204ENST00000460696 DCTN2Q13561 401 aaKnown RBP11.46□□□□□ -0.57
NPHP4-204ENST00000460696 MPPE1Q53F39 396 aa11.46□□□□□ -0.57
NPHP4-204ENST00000460696 CYP20A1Q6UW02 462 aa11.46□□□□□ -0.57
NPHP4-204ENST00000460696 KLHDC9Q8NEP7 349 aa11.46□□□□□ -0.57
NPHP4-204ENST00000460696 NUSAP1Q9BXS6 441 aaKnown RBP11.46□□□□□ -0.57
NPHP4-204ENST00000460696 CXXC1Q9P0U4 656 aaPredicted RBP11.46□□□□□ -0.57
NPHP4-204ENST00000460696 ZNF229Q9UJW7 825 aa11.46□□□□□ -0.57
NPHP4-204ENST00000460696 LTBP1Q14766 1721 aa11.46□□□□□ -0.58
NPHP4-204ENST00000460696 C2orf78A6NCI8 922 aa11.46□□□□□ -0.58
NPHP4-204ENST00000460696 K7ERQ8 282 aa11.46□□□□□ -0.58
NPHP4-204ENST00000460696 GPR39O43194 453 aa11.46□□□□□ -0.58
NPHP4-204ENST00000460696 H6PDO95479 791 aa11.46□□□□□ -0.58
NPHP4-204ENST00000460696 ZBTB11O95625 1053 aaPredicted RBP11.46□□□□□ -0.58
NPHP4-204ENST00000460696 GLUD1P00367 558 aa11.46□□□□□ -0.58
NPHP4-204ENST00000460696 ADH1AP07327 375 aa11.46□□□□□ -0.58
NPHP4-204ENST00000460696 G6PDP11413 515 aa11.46□□□□□ -0.58
NPHP4-204ENST00000460696 CYP2A6P11509 494 aaPredicted RBP11.46□□□□□ -0.58
NPHP4-204ENST00000460696 FOXA1P55317 472 aa11.46□□□□□ -0.58
NPHP4-204ENST00000460696 RING1Q06587 406 aa11.46□□□□□ -0.58
NPHP4-204ENST00000460696 ERAP2Q6P179 960 aa11.46□□□□□ -0.58
NPHP4-204ENST00000460696 FBXL19Q6PCT2 694 aa11.46□□□□□ -0.58
NPHP4-204ENST00000460696 BEND5Q7L4P6 421 aa11.46□□□□□ -0.58
NPHP4-204ENST00000460696 RRM2BQ7LG56 351 aa11.46□□□□□ -0.58
NPHP4-204ENST00000460696 CLEC14AQ86T13 490 aa11.46□□□□□ -0.58
NPHP4-204ENST00000460696 PROSER1Q86XN7 944 aa11.46□□□□□ -0.58
NPHP4-204ENST00000460696 CMTM8Q8IZV2 173 aa11.46□□□□□ -0.58
NPHP4-204ENST00000460696 FLCNQ8NFG4 579 aa11.46□□□□□ -0.58
NPHP4-204ENST00000460696 ZNF461Q8TAF7 563 aa11.46□□□□□ -0.58
NPHP4-204ENST00000460696 C2orf15Q8WU43 125 aaKnown RBP11.46□□□□□ -0.58
NPHP4-204ENST00000460696 DACH2Q96NX9 599 aa11.46□□□□□ -0.58
NPHP4-204ENST00000460696 NLE1Q9NVX2 485 aaPredicted RBP11.46□□□□□ -0.58
NPHP4-204ENST00000460696 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.45□□□□□ -0.58
NPHP4-204ENST00000460696 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.45□□□□□ -0.58
NPHP4-204ENST00000460696 A0A1W2PP18 115 aa11.45□□□□□ -0.58
NPHP4-204ENST00000460696 LDB2O43679 373 aa11.45□□□□□ -0.58
NPHP4-204ENST00000460696 CLDN9O95484 217 aa11.45□□□□□ -0.58
NPHP4-204ENST00000460696 NR4A1P22736 598 aa11.45□□□□□ -0.58
NPHP4-204ENST00000460696 YAP1P46937 504 aaKnown RBP11.45□□□□□ -0.58
NPHP4-204ENST00000460696 ADAM17P78536 824 aa11.45□□□□□ -0.58
NPHP4-204ENST00000460696 DAB2P98082 770 aa11.45□□□□□ -0.58
NPHP4-204ENST00000460696 CBX2Q14781 532 aaPredicted RBP11.45□□□□□ -0.58
NPHP4-204ENST00000460696 OR52B6Q8NGF0 335 aa11.45□□□□□ -0.58
NPHP4-204ENST00000460696 POF1BQ8WVV4 589 aa11.45□□□□□ -0.58
NPHP4-204ENST00000460696 SLC45A3Q96JT2 553 aa11.45□□□□□ -0.58
NPHP4-204ENST00000460696 EBPLQ9BY08 206 aa11.45□□□□□ -0.58
NPHP4-204ENST00000460696 IL23AQ9NPF7 189 aa11.45□□□□□ -0.58
NPHP4-204ENST00000460696 VPS51Q9UID3 782 aa11.45□□□□□ -0.58
NPHP4-204ENST00000460696 A6NHS1 94 aa11.45□□□□□ -0.58
NPHP4-204ENST00000460696 G3V2T6 193 aa11.45□□□□□ -0.58
NPHP4-204ENST00000460696 TRMUO75648 421 aaKnown RBP11.45□□□□□ -0.58
NPHP4-204ENST00000460696 COL11A1P12107 1806 aaPredicted RBP11.45□□□□□ -0.58
NPHP4-204ENST00000460696 SERPINB10P48595 397 aa11.45□□□□□ -0.58
NPHP4-204ENST00000460696 ADARP55265 1226 aaKnown RBP11.45□□□□□ -0.58
NPHP4-204ENST00000460696 NAE1Q13564 534 aa11.45□□□□□ -0.58
NPHP4-204ENST00000460696 C9orf50Q5SZB4 431 aa11.45□□□□□ -0.58
NPHP4-204ENST00000460696 CCDC149Q6ZUS6 474 aa11.45□□□□□ -0.58
NPHP4-204ENST00000460696 GALNT5Q7Z7M9 940 aa11.45□□□□□ -0.58
NPHP4-204ENST00000460696 SLC13A3Q8WWT9 602 aa11.45□□□□□ -0.58
NPHP4-204ENST00000460696 OTULINQ96BN8 352 aa11.45□□□□□ -0.58
NPHP4-204ENST00000460696 MEAF6Q9HAF1 191 aa11.45□□□□□ -0.58
NPHP4-204ENST00000460696 C3orf18Q9UK00 162 aa11.45□□□□□ -0.58
NPHP4-204ENST00000460696 ABHD14A-ACY1A0A1B0GW23 586 aa11.45□□□□□ -0.58
NPHP4-204ENST00000460696 ELOVL7A1L3X0 281 aa11.45□□□□□ -0.58
NPHP4-204ENST00000460696 ZNF840PA6NDX5 716 aa11.45□□□□□ -0.58
NPHP4-204ENST00000460696 STC2O76061 302 aa11.45□□□□□ -0.58
NPHP4-204ENST00000460696 TIMP1P01033 207 aa11.45□□□□□ -0.58
NPHP4-204ENST00000460696 HSMCR30P0CW71 290 aa11.45□□□□□ -0.58
NPHP4-204ENST00000460696 CRATP43155 626 aa11.45□□□□□ -0.58
NPHP4-204ENST00000460696 ATP1A4Q13733 1029 aa11.45□□□□□ -0.58
NPHP4-204ENST00000460696 SIM2Q14190 667 aaPredicted RBP11.45□□□□□ -0.58
NPHP4-204ENST00000460696 LSMEM2Q8N112 164 aa11.45□□□□□ -0.58
NPHP4-204ENST00000460696 OR10Q1Q8NGQ4 319 aa11.45□□□□□ -0.58
NPHP4-204ENST00000460696 GSTO2Q9H4Y5 243 aa11.45□□□□□ -0.58
NPHP4-204ENST00000460696 KIF13BQ9NQT8 1826 aa11.45□□□□□ -0.58
NPHP4-204ENST00000460696 FAM234BA2RU67 622 aa11.44□□□□□ -0.58
NPHP4-204ENST00000460696 AQP12BA6NM10 295 aa11.44□□□□□ -0.58
NPHP4-204ENST00000460696 H3BSA7 217 aa11.44□□□□□ -0.58
NPHP4-204ENST00000460696 GPC1P35052 558 aa11.44□□□□□ -0.58
NPHP4-204ENST00000460696 PPM1AP35813 382 aa11.44□□□□□ -0.58
NPHP4-204ENST00000460696 NEK2P51955 445 aa11.44□□□□□ -0.58
NPHP4-204ENST00000460696 PRKCQQ04759 706 aa11.44□□□□□ -0.58
NPHP4-204ENST00000460696 LYPLAL1Q5VWZ2 237 aa11.44□□□□□ -0.58
NPHP4-204ENST00000460696 SYVN1Q86TM6 617 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms