RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 FREM2Q5SZK8 3169 aa18.28■□□□□ 0.52
USP39-209ENST00000458268 PKD1L2Q7Z442 2459 aa18.28■□□□□ 0.52
USP39-209ENST00000458268 IGLV3-16A0A075B6K0 115 aa18.27■□□□□ 0.52
USP39-209ENST00000458268 GOLGA8KD6RF30 607 aa18.27■□□□□ 0.52
USP39-209ENST00000458268 GOLGA8TH3BQL2 631 aa18.27■□□□□ 0.52
USP39-209ENST00000458268 AP3B1O00203 1094 aa18.27■□□□□ 0.52
USP39-209ENST00000458268 HGSO14964 777 aaPredicted RBP18.27■□□□□ 0.52
USP39-209ENST00000458268 TMEM63AO94886 807 aa18.27■□□□□ 0.52
USP39-209ENST00000458268 NSG1P42857 185 aa18.27■□□□□ 0.52
USP39-209ENST00000458268 LEPRP48357 1165 aaKnown RBP18.27■□□□□ 0.52
USP39-209ENST00000458268 ARCN1P48444 511 aaKnown RBP18.27■□□□□ 0.52
USP39-209ENST00000458268 TRA2AQ13595 282 aaKnown RBP eCLIP18.27■□□□□ 0.52
USP39-209ENST00000458268 SEMA3AQ14563 771 aa18.27■□□□□ 0.52
USP39-209ENST00000458268 ITIH4Q14624 930 aa18.27■□□□□ 0.52
USP39-209ENST00000458268 LRRC8BQ6P9F7 803 aa18.27■□□□□ 0.52
USP39-209ENST00000458268 FAM92BQ6ZTR7 304 aa18.27■□□□□ 0.52
USP39-209ENST00000458268 ZNF534Q76KX8 674 aa18.27■□□□□ 0.52
USP39-209ENST00000458268 PLXDC1Q8IUK5 500 aa18.27■□□□□ 0.52
USP39-209ENST00000458268 SPACA3Q8IXA5 215 aa18.27■□□□□ 0.52
USP39-209ENST00000458268 TMEM159Q96B96 161 aa18.27■□□□□ 0.52
USP39-209ENST00000458268 FERD3LQ96RJ6 166 aa18.27■□□□□ 0.52
USP39-209ENST00000458268 OCIAD1Q9NX40 245 aa18.27■□□□□ 0.52
USP39-209ENST00000458268 OGFRQ9NZT2 677 aa18.27■□□□□ 0.52
USP39-209ENST00000458268 FOXJ2Q9P0K8 574 aa18.27■□□□□ 0.52
USP39-209ENST00000458268 SAMD15Q9P1V8 674 aa18.27■□□□□ 0.52
USP39-209ENST00000458268 DMXL2Q8TDJ6 3036 aa18.27■□□□□ 0.51
USP39-209ENST00000458268 A0A087WV48 116 aa18.26■□□□□ 0.51
USP39-209ENST00000458268 CTAGE9A4FU28 777 aa18.26■□□□□ 0.51
USP39-209ENST00000458268 CDRT15L2A8MXV6 281 aa18.26■□□□□ 0.51
USP39-209ENST00000458268 IFRD1O00458 451 aaPredicted RBP18.26■□□□□ 0.51
USP39-209ENST00000458268 CAPN5O15484 640 aaPredicted RBP18.26■□□□□ 0.51
USP39-209ENST00000458268 FTH1P02794 183 aa18.26■□□□□ 0.51
USP39-209ENST00000458268 OR56A5P0C7T3 313 aa18.26■□□□□ 0.51
USP39-209ENST00000458268 PDHA2P29803 388 aa18.26■□□□□ 0.51
USP39-209ENST00000458268 CYP1B1Q16678 543 aa18.26■□□□□ 0.51
USP39-209ENST00000458268 TMEM164Q5U3C3 297 aa18.26■□□□□ 0.51
USP39-209ENST00000458268 BROXQ5VW32 411 aa18.26■□□□□ 0.51
USP39-209ENST00000458268 LYPLAL1Q5VWZ2 237 aa18.26■□□□□ 0.51
USP39-209ENST00000458268 WDR74Q6RFH5 385 aaPredicted RBP18.26■□□□□ 0.51
USP39-209ENST00000458268 ZFAND4Q86XD8 727 aa18.26■□□□□ 0.51
USP39-209ENST00000458268 RBM12BQ8IXT5 1001 aaKnown RBP18.26■□□□□ 0.51
USP39-209ENST00000458268 MPP5Q8N3R9 675 aa18.26■□□□□ 0.51
USP39-209ENST00000458268 CPT1BQ92523 772 aa18.26■□□□□ 0.51
USP39-209ENST00000458268 PMEPA1Q969W9 287 aa18.26■□□□□ 0.51
USP39-209ENST00000458268 LINC00615Q96LM1 132 aaPredicted RBP18.26■□□□□ 0.51
USP39-209ENST00000458268 CTRCQ99895 268 aa18.26■□□□□ 0.51
USP39-209ENST00000458268 EPB41L1Q9H4G0 881 aa18.26■□□□□ 0.51
USP39-209ENST00000458268 SLC39A1Q9NY26 324 aa18.26■□□□□ 0.51
USP39-209ENST00000458268 MARCH4Q9P2E8 410 aaPredicted RBP18.26■□□□□ 0.51
USP39-209ENST00000458268 UBA6A0AVT1 1052 aaPredicted RBP18.25■□□□□ 0.51
USP39-209ENST00000458268 CES2O00748 559 aa18.25■□□□□ 0.51
USP39-209ENST00000458268 CD3EAPO15446 510 aaKnown RBP18.25■□□□□ 0.51
USP39-209ENST00000458268 KIF1CO43896 1103 aaKnown RBP18.25■□□□□ 0.51
USP39-209ENST00000458268 AP2A2O94973 939 aa18.25■□□□□ 0.51
USP39-209ENST00000458268 VAPBO95292 243 aa18.25■□□□□ 0.51
USP39-209ENST00000458268 FGF3P11487 239 aaPredicted RBP18.25■□□□□ 0.51
USP39-209ENST00000458268 PPARGP37231 505 aaPredicted RBP18.25■□□□□ 0.51
USP39-209ENST00000458268 CAPZBP47756 277 aa18.25■□□□□ 0.51
USP39-209ENST00000458268 FNTAP49354 379 aa18.25■□□□□ 0.51
USP39-209ENST00000458268 PPP1CAP62136 330 aa18.25■□□□□ 0.51
USP39-209ENST00000458268 CDK16Q00536 496 aa18.25■□□□□ 0.51
USP39-209ENST00000458268 SQSTM1Q13501 440 aa18.25■□□□□ 0.51
USP39-209ENST00000458268 AARS2Q5JTZ9 985 aaKnown RBP18.25■□□□□ 0.51
USP39-209ENST00000458268 ARMC6Q6NXE6 501 aa18.25■□□□□ 0.51
USP39-209ENST00000458268 IGF2-ASQ6U949 168 aa18.25■□□□□ 0.51
USP39-209ENST00000458268 CLEC14AQ86T13 490 aa18.25■□□□□ 0.51
USP39-209ENST00000458268 PHC3Q8NDX5 983 aa18.25■□□□□ 0.51
USP39-209ENST00000458268 MFSD3Q96ES6 412 aa18.25■□□□□ 0.51
USP39-209ENST00000458268 TRIM56Q9BRZ2 755 aaKnown RBP18.25■□□□□ 0.51
USP39-209ENST00000458268 HGH1Q9BTY7 390 aa18.25■□□□□ 0.51
USP39-209ENST00000458268 UCK1Q9HA47 277 aa18.25■□□□□ 0.51
USP39-209ENST00000458268 RIMKLBQ9ULI2 386 aa18.25■□□□□ 0.51
USP39-209ENST00000458268 SAR1BQ9Y6B6 198 aa18.25■□□□□ 0.51
USP39-209ENST00000458268 MAD1L1Q9Y6D9 718 aa18.25■□□□□ 0.51
USP39-209ENST00000458268 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP18.24■□□□□ 0.51
USP39-209ENST00000458268 KLHL33A6NCF5 533 aa18.24■□□□□ 0.51
USP39-209ENST00000458268 QSOX1O00391 747 aa18.24■□□□□ 0.51
USP39-209ENST00000458268 MLLT3P42568 568 aaPredicted RBP18.24■□□□□ 0.51
USP39-209ENST00000458268 CXADRP78310 365 aa18.24■□□□□ 0.51
USP39-209ENST00000458268 ACVR1Q04771 509 aa18.24■□□□□ 0.51
USP39-209ENST00000458268 FOXM1Q08050 763 aa18.24■□□□□ 0.51
USP39-209ENST00000458268 PRKG2Q13237 762 aa18.24■□□□□ 0.51
USP39-209ENST00000458268 TGIF1Q15583 401 aa18.24■□□□□ 0.51
USP39-209ENST00000458268 CACHD1Q5VU97 1274 aa18.24■□□□□ 0.51
USP39-209ENST00000458268 XKR5Q6UX68 686 aa18.24■□□□□ 0.51
USP39-209ENST00000458268 KRT222Q8N1A0 295 aa18.24■□□□□ 0.51
USP39-209ENST00000458268 ZNF669Q96BR6 464 aaPredicted RBP18.24■□□□□ 0.51
USP39-209ENST00000458268 IL1RAPL1Q9NZN1 696 aa18.24■□□□□ 0.51
USP39-209ENST00000458268 TSR3Q9UJK0 312 aaKnown RBP18.24■□□□□ 0.51
USP39-209ENST00000458268 COLEC10Q9Y6Z7 277 aa18.24■□□□□ 0.51
USP39-209ENST00000458268 MN1Q10571 1320 aaPredicted RBP18.23■□□□□ 0.51
USP39-209ENST00000458268 C17orf113A0A1B0GUU1 675 aa18.23■□□□□ 0.51
USP39-209ENST00000458268 OR6C74A6NCV1 312 aa18.23■□□□□ 0.51
USP39-209ENST00000458268 IQCF5A8MTL0 148 aa18.23■□□□□ 0.51
USP39-209ENST00000458268 C9orf172C9J069 976 aa18.23■□□□□ 0.51
USP39-209ENST00000458268 NDUFS3O75489 264 aa18.23■□□□□ 0.51
USP39-209ENST00000458268 PSMA3P25788 255 aa18.23■□□□□ 0.51
USP39-209ENST00000458268 EIF3BP55884 814 aaKnown RBP18.23■□□□□ 0.51
USP39-209ENST00000458268 TLE3Q04726 772 aa18.23■□□□□ 0.51
USP39-209ENST00000458268 ANKS6Q68DC2 871 aa18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms