RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 RCOR2Q8IZ40 523 aa12.97□□□□□ -0.33
HMGB3-204ENST00000448905 IPMKQ8NFU5 416 aa12.97□□□□□ -0.33
HMGB3-204ENST00000448905 HEXDCQ8WVB3 486 aa12.97□□□□□ -0.33
HMGB3-204ENST00000448905 LRRC45Q96CN5 670 aa12.97□□□□□ -0.33
HMGB3-204ENST00000448905 CLIP3Q96DZ5 547 aa12.97□□□□□ -0.33
HMGB3-204ENST00000448905 INSM2Q96T92 566 aaPredicted RBP12.97□□□□□ -0.33
HMGB3-204ENST00000448905 WWP1Q9H0M0 922 aa12.97□□□□□ -0.33
HMGB3-204ENST00000448905 KIR3DX1Q9H7L2 352 aa12.97□□□□□ -0.33
HMGB3-204ENST00000448905 NHEJ1Q9H9Q4 299 aaPredicted RBP12.97□□□□□ -0.33
HMGB3-204ENST00000448905 SLAMF7Q9NQ25 335 aa12.97□□□□□ -0.33
HMGB3-204ENST00000448905 LATS2Q9NRM7 1088 aa12.97□□□□□ -0.33
HMGB3-204ENST00000448905 SMOXQ9NWM0 555 aa12.97□□□□□ -0.33
HMGB3-204ENST00000448905 SAE1Q9UBE0 346 aaPredicted RBP12.97□□□□□ -0.33
HMGB3-204ENST00000448905 SLC24A2Q9UI40 661 aa12.97□□□□□ -0.33
HMGB3-204ENST00000448905 INTUQ9ULD6 942 aa12.97□□□□□ -0.33
HMGB3-204ENST00000448905 SNX7Q9UNH6 387 aa12.97□□□□□ -0.33
HMGB3-204ENST00000448905 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.97□□□□□ -0.33
HMGB3-204ENST00000448905 CFAP99D6REC4 459 aa12.96□□□□□ -0.33
HMGB3-204ENST00000448905 BUD23O43709 281 aaKnown RBP12.96□□□□□ -0.33
HMGB3-204ENST00000448905 DPM1O60762 260 aa12.96□□□□□ -0.33
HMGB3-204ENST00000448905 DNAJB5O75953 348 aa12.96□□□□□ -0.33
HMGB3-204ENST00000448905 POLBP06746 335 aa12.96□□□□□ -0.33
HMGB3-204ENST00000448905 COMTP21964 271 aa12.96□□□□□ -0.33
HMGB3-204ENST00000448905 CDH3P22223 829 aa12.96□□□□□ -0.33
HMGB3-204ENST00000448905 CD68P34810 354 aaPredicted RBP12.96□□□□□ -0.33
HMGB3-204ENST00000448905 CDKN2BP42772 138 aa12.96□□□□□ -0.33
HMGB3-204ENST00000448905 RRADP55042 308 aa12.96□□□□□ -0.33
HMGB3-204ENST00000448905 PPP1CAP62136 330 aa12.96□□□□□ -0.33
HMGB3-204ENST00000448905 GPR19Q15760 415 aa12.96□□□□□ -0.33
HMGB3-204ENST00000448905 TFDP3Q5H9I0 405 aa12.96□□□□□ -0.33
HMGB3-204ENST00000448905 FAM182AQ5T1J6 154 aa12.96□□□□□ -0.33
HMGB3-204ENST00000448905 FAM83HQ6ZRV2 1179 aaPredicted RBP12.96□□□□□ -0.33
HMGB3-204ENST00000448905 MED25Q71SY5 747 aa12.96□□□□□ -0.33
HMGB3-204ENST00000448905 DET1Q7L5Y6 550 aa12.96□□□□□ -0.33
HMGB3-204ENST00000448905 ZNF567Q8N184 647 aa12.96□□□□□ -0.33
HMGB3-204ENST00000448905 OR4E2Q8NGC2 313 aa12.96□□□□□ -0.33
HMGB3-204ENST00000448905 GPR150Q8NGU9 434 aa12.96□□□□□ -0.33
HMGB3-204ENST00000448905 LCN9Q8WX39 176 aa12.96□□□□□ -0.33
HMGB3-204ENST00000448905 ZNF501Q96CX3 271 aaPredicted RBP12.96□□□□□ -0.33
HMGB3-204ENST00000448905 MRGPRX2Q96LB1 330 aa12.96□□□□□ -0.33
HMGB3-204ENST00000448905 NLNQ9BYT8 704 aa12.96□□□□□ -0.33
HMGB3-204ENST00000448905 ASB8Q9H765 288 aa12.96□□□□□ -0.33
HMGB3-204ENST00000448905 AKIRIN1Q9H9L7 192 aaPredicted RBP12.96□□□□□ -0.33
HMGB3-204ENST00000448905 MLXIPLQ9NP71 852 aa12.96□□□□□ -0.33
HMGB3-204ENST00000448905 C1GALT1Q9NS00 363 aa12.96□□□□□ -0.33
HMGB3-204ENST00000448905 RSPH14Q9UHP6 348 aa12.96□□□□□ -0.33
HMGB3-204ENST00000448905 AAR2Q9Y312 384 aaKnown RBP12.96□□□□□ -0.33
HMGB3-204ENST00000448905 CFAP20Q9Y6A4 193 aaKnown RBP12.96□□□□□ -0.33
HMGB3-204ENST00000448905 IFRD1O00458 451 aaPredicted RBP12.95□□□□□ -0.34
HMGB3-204ENST00000448905 KLHL41O60662 606 aa12.95□□□□□ -0.34
HMGB3-204ENST00000448905 PRAMEF1O95521 474 aa12.95□□□□□ -0.34
HMGB3-204ENST00000448905 CRTAMO95727 393 aa12.95□□□□□ -0.34
HMGB3-204ENST00000448905 CD63P08962 238 aa12.95□□□□□ -0.34
HMGB3-204ENST00000448905 HBQ1P09105 142 aa12.95□□□□□ -0.34
HMGB3-204ENST00000448905 POLR2CP19387 275 aaPredicted RBP12.95□□□□□ -0.34
HMGB3-204ENST00000448905 CYP2A7P20853 494 aa12.95□□□□□ -0.34
HMGB3-204ENST00000448905 AGXTP21549 392 aa12.95□□□□□ -0.34
HMGB3-204ENST00000448905 GNLYP22749 145 aa12.95□□□□□ -0.34
HMGB3-204ENST00000448905 CHRNA4P43681 627 aa12.95□□□□□ -0.34
HMGB3-204ENST00000448905 PREPP48147 710 aa12.95□□□□□ -0.34
HMGB3-204ENST00000448905 GEMP55040 296 aa12.95□□□□□ -0.34
HMGB3-204ENST00000448905 RPS18P62269 152 aaKnown RBP12.95□□□□□ -0.34
HMGB3-204ENST00000448905 PRPSAP1Q14558 356 aa12.95□□□□□ -0.34
HMGB3-204ENST00000448905 TCEAL1Q15170 157 aa12.95□□□□□ -0.34
HMGB3-204ENST00000448905 TAF1AQ15573 450 aaPredicted RBP12.95□□□□□ -0.34
HMGB3-204ENST00000448905 CCDC181Q5TID7 509 aa12.95□□□□□ -0.34
HMGB3-204ENST00000448905 PAPD7Q5XG87 772 aaKnown RBP12.95□□□□□ -0.34
HMGB3-204ENST00000448905 HIST2H2BCQ6DN03 193 aa12.95□□□□□ -0.34
HMGB3-204ENST00000448905 ITPRIPL1Q6GPH6 555 aa12.95□□□□□ -0.34
HMGB3-204ENST00000448905 CAPRIN2Q6IMN6 1127 aaKnown RBP12.95□□□□□ -0.34
HMGB3-204ENST00000448905 SPOCD1Q6ZMY3 1216 aa12.95□□□□□ -0.34
HMGB3-204ENST00000448905 HOOK3Q86VS8 718 aa12.95□□□□□ -0.34
HMGB3-204ENST00000448905 TMEM102Q8N9M5 508 aaPredicted RBP12.95□□□□□ -0.34
HMGB3-204ENST00000448905 ACVR1CQ8NER5 493 aa12.95□□□□□ -0.34
HMGB3-204ENST00000448905 ULK4Q96C45 1275 aa12.95□□□□□ -0.34
HMGB3-204ENST00000448905 LINC00615Q96LM1 132 aaPredicted RBP12.95□□□□□ -0.34
HMGB3-204ENST00000448905 C17orf62Q9BQA9 187 aa12.95□□□□□ -0.34
HMGB3-204ENST00000448905 DPH2Q9BQC3 489 aaPredicted RBP12.95□□□□□ -0.34
HMGB3-204ENST00000448905 TRIM55Q9BYV6 548 aa12.95□□□□□ -0.34
HMGB3-204ENST00000448905 SLC29A3Q9BZD2 475 aa12.95□□□□□ -0.34
HMGB3-204ENST00000448905 CHST8Q9H2A9 424 aa12.95□□□□□ -0.34
HMGB3-204ENST00000448905 SRMSQ9H3Y6 488 aa12.95□□□□□ -0.34
HMGB3-204ENST00000448905 CUEDC1Q9NWM3 386 aaPredicted RBP12.95□□□□□ -0.34
HMGB3-204ENST00000448905 MAP4K5Q9Y4K4 846 aa12.95□□□□□ -0.34
HMGB3-204ENST00000448905 TLN1Q9Y490 2541 aaKnown RBP12.95□□□□□ -0.34
HMGB3-204ENST00000448905 C17orf113A0A1B0GUU1 675 aa12.94□□□□□ -0.34
HMGB3-204ENST00000448905 CCDC66A2RUB6 948 aa12.94□□□□□ -0.34
HMGB3-204ENST00000448905 SLC9B1P1A6NJY1 282 aa12.94□□□□□ -0.34
HMGB3-204ENST00000448905 PSTPIP1O43586 416 aa12.94□□□□□ -0.34
HMGB3-204ENST00000448905 SRP72O76094 671 aaKnown RBP12.94□□□□□ -0.34
HMGB3-204ENST00000448905 STK10O94804 968 aaKnown RBP12.94□□□□□ -0.34
HMGB3-204ENST00000448905 TMEM63AO94886 807 aa12.94□□□□□ -0.34
HMGB3-204ENST00000448905 AGTP01019 485 aa12.94□□□□□ -0.34
HMGB3-204ENST00000448905 PDGFAP04085 211 aa12.94□□□□□ -0.34
HMGB3-204ENST00000448905 VAV2P52735 878 aa12.94□□□□□ -0.34
HMGB3-204ENST00000448905 GPS2Q13227 327 aa12.94□□□□□ -0.34
HMGB3-204ENST00000448905 NOMO1Q15155 1222 aa12.94□□□□□ -0.34
HMGB3-204ENST00000448905 INPP5JQ15735 1006 aaPredicted RBP12.94□□□□□ -0.34
HMGB3-204ENST00000448905 TAZQ16635 292 aa12.94□□□□□ -0.34
HMGB3-204ENST00000448905 BCL7AQ4VC05 210 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms