RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 MTERF1Q99551 399 aaKnown RBP16.97■□□□□ 0.31
PTPRF-209ENST00000438120 GATA5Q9BWX5 397 aaPredicted RBP16.97■□□□□ 0.31
PTPRF-209ENST00000438120 ST6GALNAC4Q9H4F1 302 aa16.97■□□□□ 0.31
PTPRF-209ENST00000438120 C11orf16Q9NQ32 467 aa16.97■□□□□ 0.31
PTPRF-209ENST00000438120 CTPS2Q9NRF8 586 aa16.97■□□□□ 0.31
PTPRF-209ENST00000438120 ZNF536O15090 1300 aa16.97■□□□□ 0.31
PTPRF-209ENST00000438120 SLC35G6P0C7Q6 338 aa16.97■□□□□ 0.31
PTPRF-209ENST00000438120 PRKCHP24723 683 aa16.97■□□□□ 0.31
PTPRF-209ENST00000438120 AP1S1P61966 158 aa16.97■□□□□ 0.31
PTPRF-209ENST00000438120 C2orf27AQ580R0 203 aa16.97■□□□□ 0.31
PTPRF-209ENST00000438120 HDDC3Q8N4P3 179 aa16.97■□□□□ 0.31
PTPRF-209ENST00000438120 C12orf66Q96MD2 445 aa16.97■□□□□ 0.31
PTPRF-209ENST00000438120 TRPS1Q9UHF7 1281 aa16.97■□□□□ 0.31
PTPRF-209ENST00000438120 DCLK1O15075 740 aa16.96■□□□□ 0.31
PTPRF-209ENST00000438120 RLN1P04808 185 aa16.96■□□□□ 0.31
PTPRF-209ENST00000438120 DCST1Q5T197 706 aa16.96■□□□□ 0.31
PTPRF-209ENST00000438120 RBM18Q96H35 190 aaKnown RBP16.96■□□□□ 0.31
PTPRF-209ENST00000438120 SIRPGQ9P1W8 387 aa16.96■□□□□ 0.31
PTPRF-209ENST00000438120 RBMXL2O75526 392 aaKnown RBP16.96■□□□□ 0.31
PTPRF-209ENST00000438120 IFNW1P05000 195 aa16.96■□□□□ 0.31
PTPRF-209ENST00000438120 MFSD5Q6N075 450 aa16.96■□□□□ 0.31
PTPRF-209ENST00000438120 AHSA2Q719I0 299 aa16.96■□□□□ 0.31
PTPRF-209ENST00000438120 MCEMP1Q8IX19 187 aa16.96■□□□□ 0.31
PTPRF-209ENST00000438120 BRSK1Q8TDC3 778 aa16.96■□□□□ 0.31
PTPRF-209ENST00000438120 WDR60Q8WVS4 1066 aa16.96■□□□□ 0.31
PTPRF-209ENST00000438120 SRMSQ9H3Y6 488 aa16.96■□□□□ 0.31
PTPRF-209ENST00000438120 RBPJLQ9UBG7 517 aa16.96■□□□□ 0.31
PTPRF-209ENST00000438120 MFHAS1Q9Y4C4 1052 aa16.96■□□□□ 0.31
PTPRF-209ENST00000438120 CLDN4O14493 209 aa16.96■□□□□ 0.31
PTPRF-209ENST00000438120 AXIN1O15169 862 aa16.96■□□□□ 0.31
PTPRF-209ENST00000438120 PLIN3O60664 434 aa16.96■□□□□ 0.31
PTPRF-209ENST00000438120 TM7SF2O76062 418 aa16.96■□□□□ 0.31
PTPRF-209ENST00000438120 PTGIRP43119 386 aa16.96■□□□□ 0.31
PTPRF-209ENST00000438120 IDH3AP50213 366 aa16.96■□□□□ 0.31
PTPRF-209ENST00000438120 GAD2Q05329 585 aa16.96■□□□□ 0.31
PTPRF-209ENST00000438120 TMEM63BQ5T3F8 832 aa16.96■□□□□ 0.31
PTPRF-209ENST00000438120 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP16.96■□□□□ 0.311e-11■■□□□ 13.6
PTPRF-209ENST00000438120 MCFD2Q8NI22 146 aa16.96■□□□□ 0.31
PTPRF-209ENST00000438120 PRKAR1AP10644 381 aa16.96■□□□□ 0.31
PTPRF-209ENST00000438120 IL18Q14116 193 aa16.96■□□□□ 0.31
PTPRF-209ENST00000438120 DPYSQ14117 519 aa16.96■□□□□ 0.31
PTPRF-209ENST00000438120 SLC30A6Q6NXT4 461 aa16.96■□□□□ 0.31
PTPRF-209ENST00000438120 ERICH5Q6P6B1 374 aa16.96■□□□□ 0.31
PTPRF-209ENST00000438120 ATCAYQ86WG3 371 aa16.96■□□□□ 0.31
PTPRF-209ENST00000438120 MPP5Q8N3R9 675 aa16.96■□□□□ 0.31
PTPRF-209ENST00000438120 LRRC17Q8N6Y2 441 aa16.96■□□□□ 0.31
PTPRF-209ENST00000438120 ARL10Q8N8L6 244 aa16.96■□□□□ 0.31
PTPRF-209ENST00000438120 SLC38A3Q99624 504 aa16.96■□□□□ 0.31
PTPRF-209ENST00000438120 BHLHE41Q9C0J9 482 aaPredicted RBP16.96■□□□□ 0.31
PTPRF-209ENST00000438120 CREB1P16220 341 aa16.96■□□□□ 0.3
PTPRF-209ENST00000438120 STXBP1P61764 594 aaKnown RBP16.96■□□□□ 0.3
PTPRF-209ENST00000438120 RFTN2Q52LD8 501 aaPredicted RBP16.96■□□□□ 0.3
PTPRF-209ENST00000438120 ADGRG6Q86SQ4 1221 aa16.96■□□□□ 0.3
PTPRF-209ENST00000438120 CD247P20963 164 aa16.95■□□□□ 0.3
PTPRF-209ENST00000438120 CCR10P46092 362 aa16.95■□□□□ 0.3
PTPRF-209ENST00000438120 TAS2R39P59534 338 aa16.95■□□□□ 0.3
PTPRF-209ENST00000438120 SLC13A2Q13183 592 aa16.95■□□□□ 0.3
PTPRF-209ENST00000438120 UBXN2BQ14CS0 331 aa16.95■□□□□ 0.3
PTPRF-209ENST00000438120 TMLHEQ9NVH6 421 aa16.95■□□□□ 0.3
PTPRF-209ENST00000438120 A0A075B6Q4 140 aa16.95■□□□□ 0.3
PTPRF-209ENST00000438120 MTX2O75431 263 aa16.95■□□□□ 0.3
PTPRF-209ENST00000438120 CHRM5P08912 532 aaPredicted RBP16.95■□□□□ 0.3
PTPRF-209ENST00000438120 TAF1AQ15573 450 aaPredicted RBP16.95■□□□□ 0.3
PTPRF-209ENST00000438120 SULT1C3Q6IMI6 304 aa16.95■□□□□ 0.3
PTPRF-209ENST00000438120 ARMC5Q96C12 935 aa16.95■□□□□ 0.3
PTPRF-209ENST00000438120 ELOVL2Q9NXB9 296 aa16.95■□□□□ 0.3
PTPRF-209ENST00000438120 BCL9LQ86UU0 1499 aa16.95■□□□□ 0.3
PTPRF-209ENST00000438120 FADS2P1A8MWK0 482 aa16.95■□□□□ 0.3
PTPRF-209ENST00000438120 NOS1APO75052 506 aaPredicted RBP16.95■□□□□ 0.3
PTPRF-209ENST00000438120 ALPIP09923 528 aa16.95■□□□□ 0.3
PTPRF-209ENST00000438120 UGT1A6P19224 532 aa16.95■□□□□ 0.3
PTPRF-209ENST00000438120 UGT1A1P22309 533 aa16.95■□□□□ 0.3
PTPRF-209ENST00000438120 UGT1A4P22310 534 aa16.95■□□□□ 0.3
PTPRF-209ENST00000438120 UGT1A3P35503 534 aa16.95■□□□□ 0.3
PTPRF-209ENST00000438120 ENPEPQ07075 957 aa16.95■□□□□ 0.3
PTPRF-209ENST00000438120 LAPTM5Q13571 262 aa16.95■□□□□ 0.3
PTPRF-209ENST00000438120 HNRNPDQ14103 355 aaKnown RBP16.95■□□□□ 0.3
PTPRF-209ENST00000438120 SLC51AQ86UW1 340 aa16.95■□□□□ 0.3
PTPRF-209ENST00000438120 AHI1Q8N157 1196 aa16.95■□□□□ 0.3
PTPRF-209ENST00000438120 GHDCQ8N2G8 530 aa16.95■□□□□ 0.3
PTPRF-209ENST00000438120 CBR4Q8N4T8 237 aa16.95■□□□□ 0.3
PTPRF-209ENST00000438120 ZNF366Q8N895 744 aa16.95■□□□□ 0.3
PTPRF-209ENST00000438120 PALM2-AKAP2B1ALY0 433 aaPredicted RBP16.95■□□□□ 0.3
PTPRF-209ENST00000438120 HTR7P34969 479 aa16.95■□□□□ 0.3
PTPRF-209ENST00000438120 ACLYP53396 1101 aa16.95■□□□□ 0.3
PTPRF-209ENST00000438120 SP2Q02086 613 aa16.95■□□□□ 0.3
PTPRF-209ENST00000438120 SCRN3Q0VDG4 424 aa16.95■□□□□ 0.3
PTPRF-209ENST00000438120 HKDC1Q2TB90 917 aa16.95■□□□□ 0.3
PTPRF-209ENST00000438120 PEX5LQ8IYB4 626 aa16.95■□□□□ 0.3
PTPRF-209ENST00000438120 PGAM4Q8N0Y7 254 aa16.95■□□□□ 0.3
PTPRF-209ENST00000438120 SH3RF2Q8TEC5 729 aa16.95■□□□□ 0.3
PTPRF-209ENST00000438120 IL12RB2Q99665 862 aa16.95■□□□□ 0.3
PTPRF-209ENST00000438120 RBM4BQ9BQ04 359 aaKnown RBP16.95■□□□□ 0.3
PTPRF-209ENST00000438120 RBM4Q9BWF3 364 aaKnown RBP16.95■□□□□ 0.3
PTPRF-209ENST00000438120 ZNF180Q9UJW8 692 aa16.95■□□□□ 0.3
PTPRF-209ENST00000438120 BTN3A3O00478 584 aa16.95■□□□□ 0.3
PTPRF-209ENST00000438120 NRP1O14786 923 aa16.95■□□□□ 0.3
PTPRF-209ENST00000438120 EOMESO95936 686 aa16.95■□□□□ 0.3
PTPRF-209ENST00000438120 MTPNP58546 118 aa16.95■□□□□ 0.3
PTPRF-209ENST00000438120 CRHR2Q13324 411 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms