RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 SLIT3O75094 1523 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 ATP6V1G2-DDX39BF2Z307 99 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 CTDNEP1O95476 244 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 ATP5C1P36542 298 aaKnown RBP7.1□□□□□ -1.27
VPS53-204ENST00000437048 SMSP52788 366 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 KIAA1614Q5VZ46 1190 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 GTF2IRD2BQ6EKJ0 949 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 RNF19BQ6ZMZ0 732 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 BRINP3Q76B58 766 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 GTF2IRD2Q86UP8 949 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 MAPK15Q8TD08 544 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 PCDH12Q9NPG4 1184 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 VPS28Q9UK41 221 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 TMEM14AQ9Y6G1 99 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 SOBPA7XYQ1 873 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 RFPL1O75677 317 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 STK16O75716 305 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 C8GP07360 202 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 GTF2F2P13984 249 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 CRATP43155 626 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 TBX4P57082 545 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 PTCHD3Q3KNS1 767 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 GLYATQ6IB77 296 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 CARNMT1Q8N4J0 409 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 ATAD1Q8NBU5 361 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 GSTCDQ8NEC7 633 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 OR7G2Q8NG99 324 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 H0Y858 1186 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 CREBL2O60519 120 aaPredicted RBP7.1□□□□□ -1.27
VPS53-204ENST00000437048 CLDN9O95484 217 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 TYRP14679 529 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 BCL2L1Q07817 233 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 CBFBQ13951 182 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 NTRK3Q16288 839 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 PCK2Q16822 640 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 FAM153CQ494X1 144 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 CUZD1Q86UP6 607 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 SLC47A2Q86VL8 602 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 ATG4AQ8WYN0 398 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 C16orf58Q96GQ5 468 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 FBXO5Q9UKT4 447 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 STAU1O95793 577 aaKnown RBP7.1□□□□□ -1.27
VPS53-204ENST00000437048 LAMP2P13473 410 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 GBX2P52951 348 aaPredicted RBP7.1□□□□□ -1.27
VPS53-204ENST00000437048 KCNC4Q03721 635 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 EIF4HQ15056 248 aaKnown RBP7.1□□□□□ -1.27
VPS53-204ENST00000437048 SPIN4Q56A73 249 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 CLVS2Q5SYC1 327 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 LRIF1Q5T3J3 769 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 ZNF227Q86WZ6 799 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 PCSK9Q8NBP7 692 aaKnown RBP7.1□□□□□ -1.27
VPS53-204ENST00000437048 OR4C15Q8NGM1 316 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 OSTF1Q92882 214 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 SLC39A3Q9BRY0 314 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 TKTL1P51854 596 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 ALG10Q5BKT4 473 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 RNF220Q5VTB9 566 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 OR10H5Q8NGA6 315 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 VANGL1Q8TAA9 524 aaPredicted RBP7.1□□□□□ -1.27
VPS53-204ENST00000437048 METTL2AQ96IZ6 378 aaKnown RBP7.1□□□□□ -1.27
VPS53-204ENST00000437048 ZNF717Q9BY31 904 aaPredicted RBP7.1□□□□□ -1.27
VPS53-204ENST00000437048 ZYG11BQ9C0D3 744 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 METTL8Q9H825 291 aaKnown RBP7.1□□□□□ -1.27
VPS53-204ENST00000437048 A0A0U1RQJ8 604 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 RHPN2P1A8MT19 583 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 J3QR89 54 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 TNFRSF11BO00300 401 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 PTBP1P26599 531 aaKnown RBP eCLIP7.1□□□□□ -1.274e-7■■■■■ 29.2
VPS53-204ENST00000437048 MIPP30301 263 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 PBX1P40424 430 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 PRMT2P55345 433 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 MYBPC1Q00872 1141 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 POU6F1Q14863 301 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 SLC9B1Q4ZJI4 515 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 RTL6Q6ICC9 239 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 PGBD2Q6P3X8 592 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 FAM198BQ6UWH4 519 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 CYS1Q717R9 158 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 AGBL3Q8NEM8 1001 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 TMEM169Q96HH4 297 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 ZSCAN5DPP0CG00 497 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 CAPN13Q6MZZ7 669 aaPredicted RBP7.1□□□□□ -1.27
VPS53-204ENST00000437048 ERMP1Q7Z2K6 904 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 FAM83AQ86UY5 434 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 SPATA6LQ8N4H0 392 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 TSEN2Q8NCE0 465 aaKnown RBP7.1□□□□□ -1.27
VPS53-204ENST00000437048 SLCO1B3Q9NPD5 702 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 OSGEPQ9NPF4 335 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 SLC39A1Q9NY26 324 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 NFASCO94856 1347 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 C17orf113A0A1B0GUU1 675 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 SLC7A4O43246 635 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 C9P02748 559 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 S100A8P05109 93 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 PLEKP08567 350 aaPredicted RBP7.1□□□□□ -1.27
VPS53-204ENST00000437048 GTF2BQ00403 316 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 NMUR2Q9GZQ4 415 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 MOCS1Q9NZB8 636 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 GLTPQ9NZD2 209 aa7.1□□□□□ -1.27
VPS53-204ENST00000437048 TRIM64A6NGJ6 449 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms