RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 PIGRP01833 764 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 DNTTP04053 509 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 CYP11A1P05108 521 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 GOT1P17174 413 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 CTPS1P17812 591 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 PTPRAP18433 802 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 GNALP38405 381 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 ETV6P41212 452 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 SOX9P48436 509 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 NRIP1P48552 1158 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 ZNF132P52740 706 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 CTBP2P56545 445 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 RPS14P62263 151 aaKnown RBP6.02□□□□□ -1.45
SCN1A-203ENST00000409050 PFKPQ01813 784 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 ZNF33BQ06732 778 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 GTF2H2Q13888 395 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 EFR3AQ14156 821 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 GTF2H2CQ6P1K8 395 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 PLD5Q8N7P1 536 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 ZNF563Q8TA94 476 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 LRRC20Q8TCA0 184 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 PNPLA2Q96AD5 504 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 NXPE2Q96DL1 559 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 AARSD1Q9BTE6 412 aaKnown RBP6.02□□□□□ -1.45
SCN1A-203ENST00000409050 MND1Q9BWT6 205 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 TCF7L1Q9HCS4 588 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 EXOSC1Q9Y3B2 195 aaKnown RBP6.02□□□□□ -1.45
SCN1A-203ENST00000409050 BCL9O00512 1426 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 A0A0G2JLW4 131 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 PDLIM1O00151 329 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 KCNQ2O43526 872 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 SLC25A14O95258 325 aaPredicted RBP6.02□□□□□ -1.45
SCN1A-203ENST00000409050 APODP05090 189 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 LINC00032P0C843 101 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 PIM1P11309 404 aaPredicted RBP6.02□□□□□ -1.45
SCN1A-203ENST00000409050 MTHFD1P11586 935 aaKnown RBP6.02□□□□□ -1.45
SCN1A-203ENST00000409050 HRH2P25021 359 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 GRIA2P42262 883 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 BLKP51451 505 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 CYP4F3Q08477 520 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 MAP2K5Q13163 448 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 MAB21L1Q13394 359 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 GAS6Q14393 721 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 DLG2Q15700 870 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 CERCAMQ5T4B2 595 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 DAW1Q8N136 415 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 SLC43A3Q8NBI5 491 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 INO80EQ8NBZ0 244 aaPredicted RBP6.02□□□□□ -1.45
SCN1A-203ENST00000409050 COL21A1Q96P44 957 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 HIST1H2AAQ96QV6 131 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 FERD3LQ96RJ6 166 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 NEUROD4Q9HD90 331 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 FAM120CQ9NX05 1096 aaKnown RBP6.02□□□□□ -1.45
SCN1A-203ENST00000409050 MSRAQ9UJ68 235 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 ADGRB1O14514 1584 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 SH3D21A4FU49 640 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 ANXA2P2A6NMY6 339 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 ISM1B1AKI9 464 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 PRKYO43930 277 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 TLR5O60602 858 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 PRKD3O94806 890 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 ANXA2P07355 339 aaKnown RBP6.02□□□□□ -1.45
SCN1A-203ENST00000409050 ANXA4P09525 319 aaPredicted RBP6.02□□□□□ -1.45
SCN1A-203ENST00000409050 SMIM10L2AP0DMW4 78 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 SMIM10L2BP0DMW5 78 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 IMPDH1P20839 514 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 GADD45AP24522 165 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 CXCL9Q07325 125 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 ARL6IP1Q15041 203 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 CA9Q16790 459 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 ZNF630Q2M218 657 aaPredicted RBP6.02□□□□□ -1.45
SCN1A-203ENST00000409050 C15orf59Q2T9L4 293 aaPredicted RBP6.02□□□□□ -1.45
SCN1A-203ENST00000409050 ZNF829Q3KNS6 432 aaPredicted RBP6.02□□□□□ -1.45
SCN1A-203ENST00000409050 FAM182BQ5T319 152 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 APOBEC3HQ6NTF7 200 aaKnown RBP6.02□□□□□ -1.45
SCN1A-203ENST00000409050 RNF44Q7L0R7 432 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 ZC3HC1Q86WB0 502 aaKnown RBP6.02□□□□□ -1.45
SCN1A-203ENST00000409050 FIBCD1Q8N539 461 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 VGLL2Q8N8G2 317 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 ZNF527Q8NB42 609 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 TSEN15Q8WW01 171 aaKnown RBP6.02□□□□□ -1.45
SCN1A-203ENST00000409050 METTL21AQ8WXB1 218 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 ACDQ96AP0 544 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 ZSWIM3Q96MP5 696 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 SLC39A3Q9BRY0 314 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 COPS4Q9BT78 406 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 OSBPL2Q9H1P3 480 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 HIPK3Q9H422 1215 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 AGO3Q9H9G7 860 aaKnown RBP6.02□□□□□ -1.45
SCN1A-203ENST00000409050 ZFP14Q9HCL3 533 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 TMEM39AQ9NV64 488 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 PNPOQ9NVS9 261 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 OAS3Q9Y6K5 1087 aaKnown RBP6.02□□□□□ -1.45
SCN1A-203ENST00000409050 TGFB1I1O43294 461 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 TSPAN3O60637 253 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 NME6O75414 186 aaPredicted RBP6.01□□□□□ -1.45
SCN1A-203ENST00000409050 PAGE1O75459 146 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 ZBTB7AO95365 584 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 IL3P08700 152 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 ZSCAN5DPP0CG00 497 aa6.01□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms