RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 WASH3PC4AMC7 463 aa15.31■□□□□ 0.04
CCDC40-202ENST00000374876 BTN3A1O00481 513 aa15.31■□□□□ 0.04
CCDC40-202ENST00000374876 TXNDC9O14530 226 aa15.31■□□□□ 0.04
CCDC40-202ENST00000374876 SNAP91O60641 907 aa15.31■□□□□ 0.04
CCDC40-202ENST00000374876 ALDOCP09972 364 aaKnown RBP15.31■□□□□ 0.04
CCDC40-202ENST00000374876 FOXA1P55317 472 aa15.31■□□□□ 0.04
CCDC40-202ENST00000374876 TRAF2Q12933 501 aa15.31■□□□□ 0.04
CCDC40-202ENST00000374876 TRIM25Q14258 630 aaKnown RBP15.31■□□□□ 0.04
CCDC40-202ENST00000374876 ANKS6Q68DC2 871 aa15.31■□□□□ 0.04
CCDC40-202ENST00000374876 PSAPL1Q6NUJ1 521 aa15.31■□□□□ 0.04
CCDC40-202ENST00000374876 LAYNQ6UX15 382 aa15.31■□□□□ 0.04
CCDC40-202ENST00000374876 ZNF783Q6ZMS7 281 aa15.31■□□□□ 0.04
CCDC40-202ENST00000374876 PIANPQ8IYJ0 282 aa15.31■□□□□ 0.04
CCDC40-202ENST00000374876 IL17RCQ8NAC3 791 aa15.31■□□□□ 0.04
CCDC40-202ENST00000374876 DTWD2Q8NBA8 298 aa15.31■□□□□ 0.04
CCDC40-202ENST00000374876 CATSPER1Q8NEC5 780 aa15.31■□□□□ 0.04
CCDC40-202ENST00000374876 CYB5D2Q8WUJ1 264 aa15.31■□□□□ 0.04
CCDC40-202ENST00000374876 KCNA7Q96RP8 456 aa15.31■□□□□ 0.04
CCDC40-202ENST00000374876 YIPF3Q9GZM5 350 aa15.31■□□□□ 0.04
CCDC40-202ENST00000374876 SEMA4BQ9NPR2 832 aaPredicted RBP15.31■□□□□ 0.04
CCDC40-202ENST00000374876 SPATA6Q9NWH7 488 aaPredicted RBP15.31■□□□□ 0.04
CCDC40-202ENST00000374876 CROTQ9UKG9 612 aa15.31■□□□□ 0.04
CCDC40-202ENST00000374876 PTGDR2Q9Y5Y4 395 aa15.31■□□□□ 0.04
CCDC40-202ENST00000374876 CACNA1IQ9P0X4 2223 aa15.31■□□□□ 0.04
CCDC40-202ENST00000374876 NPEPPSL1A6NEC2 478 aa15.31■□□□□ 0.04
CCDC40-202ENST00000374876 CDC7O00311 574 aa15.31■□□□□ 0.04
CCDC40-202ENST00000374876 KLF8O95600 359 aaPredicted RBP15.31■□□□□ 0.04
CCDC40-202ENST00000374876 CHRM1P11229 460 aaPredicted RBP15.31■□□□□ 0.04
CCDC40-202ENST00000374876 GPX3P22352 226 aa15.31■□□□□ 0.04
CCDC40-202ENST00000374876 RPL26P61254 145 aaKnown RBP15.31■□□□□ 0.04
CCDC40-202ENST00000374876 PITRM1Q5JRX3 1037 aa15.31■□□□□ 0.04
CCDC40-202ENST00000374876 AARS2Q5JTZ9 985 aaKnown RBP15.31■□□□□ 0.04
CCDC40-202ENST00000374876 NCEH1Q6PIU2 408 aa15.31■□□□□ 0.04
CCDC40-202ENST00000374876 HACD2Q6Y1H2 254 aa15.31■□□□□ 0.04
CCDC40-202ENST00000374876 AHI1Q8N157 1196 aa15.31■□□□□ 0.04
CCDC40-202ENST00000374876 PCYOX1LQ8NBM8 494 aa15.31■□□□□ 0.04
CCDC40-202ENST00000374876 FUBP1Q96AE4 644 aaKnown RBP15.31■□□□□ 0.04
CCDC40-202ENST00000374876 DCUN1D1Q96GG9 259 aa15.31■□□□□ 0.04
CCDC40-202ENST00000374876 KLHL32Q96NJ5 620 aa15.31■□□□□ 0.04
CCDC40-202ENST00000374876 FEM1AQ9BSK4 669 aa15.31■□□□□ 0.04
CCDC40-202ENST00000374876 HACD3Q9P035 362 aa15.31■□□□□ 0.04
CCDC40-202ENST00000374876 GALPQ9UBC7 116 aa15.31■□□□□ 0.04
CCDC40-202ENST00000374876 RIMS3Q9UJD0 308 aa15.31■□□□□ 0.04
CCDC40-202ENST00000374876 IKZF3Q9UKT9 509 aa15.31■□□□□ 0.04
CCDC40-202ENST00000374876 ANKRD36A6QL64 1941 aa15.3■□□□□ 0.04
CCDC40-202ENST00000374876 A0A0J9YYE9 177 aa15.3■□□□□ 0.04
CCDC40-202ENST00000374876 NCF1BA6NI72 391 aaPredicted RBP15.3■□□□□ 0.04
CCDC40-202ENST00000374876 BBIP1A8MTZ0 92 aa15.3■□□□□ 0.04
CCDC40-202ENST00000374876 NCF1CA8MVU1 366 aaPredicted RBP15.3■□□□□ 0.04
CCDC40-202ENST00000374876 OR1I1O60431 355 aa15.3■□□□□ 0.04
CCDC40-202ENST00000374876 NIPSNAP2O75323 286 aa15.3■□□□□ 0.04
CCDC40-202ENST00000374876 CD160O95971 181 aa15.3■□□□□ 0.04
CCDC40-202ENST00000374876 NCF1P14598 390 aaPredicted RBP15.3■□□□□ 0.04
CCDC40-202ENST00000374876 POLR2EP19388 210 aaKnown RBP15.3■□□□□ 0.04
CCDC40-202ENST00000374876 CTSOP43234 321 aaPredicted RBP15.3■□□□□ 0.04
CCDC40-202ENST00000374876 NME5P56597 212 aa15.3■□□□□ 0.04
CCDC40-202ENST00000374876 RHOAP61586 193 aa15.3■□□□□ 0.04
CCDC40-202ENST00000374876 FOLH1Q04609 750 aa15.3■□□□□ 0.04
CCDC40-202ENST00000374876 PLEKHG6Q3KR16 790 aa15.3■□□□□ 0.04
CCDC40-202ENST00000374876 SAMD4BQ5PRF9 694 aaKnown RBP15.3■□□□□ 0.04
CCDC40-202ENST00000374876 TAS2R42Q7RTR8 314 aa15.3■□□□□ 0.04
CCDC40-202ENST00000374876 MIER2Q8N344 545 aa15.3■□□□□ 0.04
CCDC40-202ENST00000374876 SIDT2Q8NBJ9 832 aaKnown RBP15.3■□□□□ 0.04
CCDC40-202ENST00000374876 TUBGCP3Q96CW5 907 aa15.3■□□□□ 0.04
CCDC40-202ENST00000374876 PRSS51A0A1B0GVH4 220 aa15.29■□□□□ 0.04
CCDC40-202ENST00000374876 E5RI56 91 aa15.29■□□□□ 0.04
CCDC40-202ENST00000374876 NR5A2O00482 541 aa15.29■□□□□ 0.04
CCDC40-202ENST00000374876 LINC00032P0C843 101 aa15.29■□□□□ 0.04
CCDC40-202ENST00000374876 CHRM3P20309 590 aa15.29■□□□□ 0.04
CCDC40-202ENST00000374876 IL2P60568 153 aa15.29■□□□□ 0.04
CCDC40-202ENST00000374876 NAA20P61599 178 aa15.29■□□□□ 0.04
CCDC40-202ENST00000374876 MRPS21P82921 87 aaKnown RBP15.29■□□□□ 0.04
CCDC40-202ENST00000374876 RALGDSQ12967 914 aa15.29■□□□□ 0.04
CCDC40-202ENST00000374876 INO80DQ53TQ3 878 aaPredicted RBP15.29■□□□□ 0.04
CCDC40-202ENST00000374876 FBXO48Q5FWF7 155 aa15.29■□□□□ 0.04
CCDC40-202ENST00000374876 CTSL3PQ5NE16 218 aa15.29■□□□□ 0.04
CCDC40-202ENST00000374876 RNF220Q5VTB9 566 aa15.29■□□□□ 0.04
CCDC40-202ENST00000374876 FUNDC1Q8IVP5 155 aa15.29■□□□□ 0.04
CCDC40-202ENST00000374876 C1orf210Q8IVY1 113 aa15.29■□□□□ 0.04
CCDC40-202ENST00000374876 CHPFQ8IZ52 775 aa15.29■□□□□ 0.04
CCDC40-202ENST00000374876 SPEM1Q8N4L4 309 aa15.29■□□□□ 0.04
CCDC40-202ENST00000374876 TTC30BQ8N4P2 665 aa15.29■□□□□ 0.04
CCDC40-202ENST00000374876 ZNF557Q8N988 423 aaPredicted RBP15.29■□□□□ 0.04
CCDC40-202ENST00000374876 ROPN1LQ96C74 230 aa15.29■□□□□ 0.04
CCDC40-202ENST00000374876 ALG14Q96F25 216 aa15.29■□□□□ 0.04
CCDC40-202ENST00000374876 SLC30A3Q99726 388 aa15.29■□□□□ 0.04
CCDC40-202ENST00000374876 PCDHAC1Q9H158 963 aa15.29■□□□□ 0.04
CCDC40-202ENST00000374876 LHX3Q9UBR4 397 aa15.29■□□□□ 0.04
CCDC40-202ENST00000374876 GIMAP2Q9UG22 337 aa15.29■□□□□ 0.04
CCDC40-202ENST00000374876 BTRCQ9Y297 605 aa15.29■□□□□ 0.04
CCDC40-202ENST00000374876 PKP3Q9Y446 797 aa15.29■□□□□ 0.04
CCDC40-202ENST00000374876 PCDHB9Q9Y5E1 797 aa15.29■□□□□ 0.04
CCDC40-202ENST00000374876 KMT2EQ8IZD2 1858 aa15.29■□□□□ 0.04
CCDC40-202ENST00000374876 PRORSD1PA6NEY8 169 aa15.29■□□□□ 0.04
CCDC40-202ENST00000374876 STX16O14662 325 aa15.29■□□□□ 0.04
CCDC40-202ENST00000374876 SNX2O60749 519 aa15.29■□□□□ 0.04
CCDC40-202ENST00000374876 ADAM23O75077 832 aa15.29■□□□□ 0.04
CCDC40-202ENST00000374876 VPS4BO75351 444 aa15.29■□□□□ 0.04
CCDC40-202ENST00000374876 RPS17P08708 135 aaKnown RBP15.29■□□□□ 0.04
CCDC40-202ENST00000374876 HGFP14210 728 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms