RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 SCN8AQ9UQD0 1980 aa20.49■□□□□ 0.87
CCDC88B-203ENST00000359902 LILRB3O75022 631 aa20.49■□□□□ 0.87
CCDC88B-203ENST00000359902 IGSF6O95976 241 aa20.49■□□□□ 0.87
CCDC88B-203ENST00000359902 G6PDP11413 515 aa20.49■□□□□ 0.87
CCDC88B-203ENST00000359902 SLC7A9P82251 487 aa20.49■□□□□ 0.87
CCDC88B-203ENST00000359902 C11orf91Q3C1V1 193 aa20.49■□□□□ 0.87
CCDC88B-203ENST00000359902 GPR33Q49SQ1 333 aa20.49■□□□□ 0.87
CCDC88B-203ENST00000359902 HABP4Q5JVS0 413 aaKnown RBP20.49■□□□□ 0.87
CCDC88B-203ENST00000359902 GRAMD4Q6IC98 578 aa20.49■□□□□ 0.87
CCDC88B-203ENST00000359902 SLC2A7Q6PXP3 512 aa20.49■□□□□ 0.87
CCDC88B-203ENST00000359902 CBARPQ8N350 705 aaPredicted RBP20.49■□□□□ 0.87
CCDC88B-203ENST00000359902 FIBCD1Q8N539 461 aa20.49■□□□□ 0.87
CCDC88B-203ENST00000359902 METTL25Q8N6Q8 603 aa20.49■□□□□ 0.87
CCDC88B-203ENST00000359902 RPL10LQ96L21 214 aaKnown RBP20.49■□□□□ 0.87
CCDC88B-203ENST00000359902 RNF208Q9H0X6 261 aa20.49■□□□□ 0.87
CCDC88B-203ENST00000359902 CCL27Q9Y4X3 112 aa20.49■□□□□ 0.87
CCDC88B-203ENST00000359902 TCRBV5S2A0A599 114 aa20.48■□□□□ 0.87
CCDC88B-203ENST00000359902 NRG2O14511 850 aaPredicted RBP20.48■□□□□ 0.87
CCDC88B-203ENST00000359902 SPAM1P38567 509 aa20.48■□□□□ 0.87
CCDC88B-203ENST00000359902 GDF5P43026 501 aa20.48■□□□□ 0.87
CCDC88B-203ENST00000359902 ROR2Q01974 943 aaKnown RBP20.48■□□□□ 0.87
CCDC88B-203ENST00000359902 APOFQ13790 326 aa20.48■□□□□ 0.87
CCDC88B-203ENST00000359902 NR6A1Q15406 480 aa20.48■□□□□ 0.87
CCDC88B-203ENST00000359902 AP5B1Q2VPB7 878 aa20.48■□□□□ 0.87
CCDC88B-203ENST00000359902 RFTN2Q52LD8 501 aaPredicted RBP20.48■□□□□ 0.87
CCDC88B-203ENST00000359902 NHSL2Q5HYW2 709 aa20.48■□□□□ 0.87
CCDC88B-203ENST00000359902 CYP20A1Q6UW02 462 aa20.48■□□□□ 0.87
CCDC88B-203ENST00000359902 CMTR2Q8IYT2 770 aaKnown RBP20.48■□□□□ 0.87
CCDC88B-203ENST00000359902 DPP10Q8N608 796 aa20.48■□□□□ 0.87
CCDC88B-203ENST00000359902 TRPV3Q8NET8 790 aa20.48■□□□□ 0.87
CCDC88B-203ENST00000359902 OR2AP1Q8NGE2 309 aa20.48■□□□□ 0.87
CCDC88B-203ENST00000359902 HTATIP2Q9BUP3 242 aa20.48■□□□□ 0.87
CCDC88B-203ENST00000359902 APOL5Q9BWW9 433 aa20.48■□□□□ 0.87
CCDC88B-203ENST00000359902 LRRC3Q9BY71 257 aa20.48■□□□□ 0.87
CCDC88B-203ENST00000359902 TBX21Q9UL17 535 aa20.48■□□□□ 0.87
CCDC88B-203ENST00000359902 ZNF510Q9Y2H8 683 aa20.48■□□□□ 0.87
CCDC88B-203ENST00000359902 FAM149AA5PLN7 773 aa20.48■□□□□ 0.87
CCDC88B-203ENST00000359902 NPIPB15A6NHN6 443 aaPredicted RBP20.48■□□□□ 0.87
CCDC88B-203ENST00000359902 SAC3D1A6NKF1 404 aa20.48■□□□□ 0.87
CCDC88B-203ENST00000359902 ANKRD28O15084 1053 aa20.48■□□□□ 0.87
CCDC88B-203ENST00000359902 INPP4BO15327 924 aa20.48■□□□□ 0.87
CCDC88B-203ENST00000359902 GPIP06744 558 aa20.48■□□□□ 0.87
CCDC88B-203ENST00000359902 ATP6V1B1P15313 513 aa20.48■□□□□ 0.87
CCDC88B-203ENST00000359902 NCK1P16333 377 aa20.48■□□□□ 0.87
CCDC88B-203ENST00000359902 FASP25445 335 aa20.48■□□□□ 0.87
CCDC88B-203ENST00000359902 SERPINA4P29622 427 aa20.48■□□□□ 0.87
CCDC88B-203ENST00000359902 SEMG2Q02383 582 aa20.48■□□□□ 0.87
CCDC88B-203ENST00000359902 TMC8Q8IU68 726 aa20.48■□□□□ 0.87
CCDC88B-203ENST00000359902 NXPE1Q8N323 547 aa20.48■□□□□ 0.87
CCDC88B-203ENST00000359902 GPR26Q8NDV2 337 aa20.48■□□□□ 0.87
CCDC88B-203ENST00000359902 ISG20Q96AZ6 181 aaKnown RBP20.48■□□□□ 0.87
CCDC88B-203ENST00000359902 EGFL8Q99944 293 aa20.48■□□□□ 0.87
CCDC88B-203ENST00000359902 TMEM79Q9BSE2 394 aa20.48■□□□□ 0.87
CCDC88B-203ENST00000359902 CD244Q9BZW8 370 aa20.48■□□□□ 0.87
CCDC88B-203ENST00000359902 ZNF106Q9H2Y7 1883 aaKnown RBP20.47■□□□□ 0.87
CCDC88B-203ENST00000359902 ARHGAP10A1A4S6 786 aa20.47■□□□□ 0.87
CCDC88B-203ENST00000359902 DYTNA2CJ06 578 aa20.47■□□□□ 0.87
CCDC88B-203ENST00000359902 TPST1O60507 370 aa20.47■□□□□ 0.87
CCDC88B-203ENST00000359902 ENO2P09104 434 aaPredicted RBP20.47■□□□□ 0.87
CCDC88B-203ENST00000359902 HMOX2P30519 316 aa20.47■□□□□ 0.87
CCDC88B-203ENST00000359902 CTSOP43234 321 aaPredicted RBP20.47■□□□□ 0.87
CCDC88B-203ENST00000359902 MNX1P50219 401 aaPredicted RBP20.47■□□□□ 0.87
CCDC88B-203ENST00000359902 CYP51A1Q16850 503 aa20.47■□□□□ 0.87
CCDC88B-203ENST00000359902 INTS11Q5TA45 600 aaKnown RBP20.47■□□□□ 0.87
CCDC88B-203ENST00000359902 CRTC1Q6UUV9 634 aa20.47■□□□□ 0.87
CCDC88B-203ENST00000359902 DLEU7Q6UYE1 221 aa20.47■□□□□ 0.87
CCDC88B-203ENST00000359902 METTL3Q86U44 580 aaKnown RBP20.47■□□□□ 0.87
CCDC88B-203ENST00000359902 HID1Q8IV36 788 aa20.47■□□□□ 0.87
CCDC88B-203ENST00000359902 CHCHD4Q8N4Q1 142 aa20.47■□□□□ 0.87
CCDC88B-203ENST00000359902 NUDT8Q8WV74 236 aa20.47■□□□□ 0.87
CCDC88B-203ENST00000359902 RHBDF1Q96CC6 855 aa20.47■□□□□ 0.87
CCDC88B-203ENST00000359902 LYSMD1Q96S90 227 aa20.47■□□□□ 0.87
CCDC88B-203ENST00000359902 TRIM4Q9C037 500 aa20.47■□□□□ 0.87
CCDC88B-203ENST00000359902 USP22Q9UPT9 525 aa20.47■□□□□ 0.87
CCDC88B-203ENST00000359902 GRXCR2A6NFK2 248 aa20.47■□□□□ 0.87
CCDC88B-203ENST00000359902 AGAP14A8MT82 685 aa20.47■□□□□ 0.87
CCDC88B-203ENST00000359902 TGM5O43548 720 aa20.47■□□□□ 0.87
CCDC88B-203ENST00000359902 STK19P49842 368 aaPredicted RBP20.47■□□□□ 0.87
CCDC88B-203ENST00000359902 AAK1Q2M2I8 961 aa20.47■□□□□ 0.87
CCDC88B-203ENST00000359902 NADK2Q4G0N4 442 aa20.47■□□□□ 0.87
CCDC88B-203ENST00000359902 CWF19L1Q69YN2 538 aaKnown RBP20.47■□□□□ 0.87
CCDC88B-203ENST00000359902 SULT1C3Q6IMI6 304 aa20.47■□□□□ 0.87
CCDC88B-203ENST00000359902 EPHX4Q8IUS5 362 aa20.47■□□□□ 0.87
CCDC88B-203ENST00000359902 ADGRG2Q8IZP9 1017 aa20.47■□□□□ 0.87
CCDC88B-203ENST00000359902 CBR4Q8N4T8 237 aa20.47■□□□□ 0.87
CCDC88B-203ENST00000359902 PACRGLQ8N7B6 248 aa20.47■□□□□ 0.87
CCDC88B-203ENST00000359902 DIS3LQ8TF46 1054 aaKnown RBP20.47■□□□□ 0.87
CCDC88B-203ENST00000359902 DGCR14Q96DF8 476 aaKnown RBP20.47■□□□□ 0.87
CCDC88B-203ENST00000359902 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP20.47■□□□□ 0.87
CCDC88B-203ENST00000359902 PADI4Q9UM07 663 aa20.47■□□□□ 0.87
CCDC88B-203ENST00000359902 KIAA1671Q9BY89 1806 aa20.46■□□□□ 0.87
CCDC88B-203ENST00000359902 A0A1B0GTW7 788 aa20.46■□□□□ 0.87
CCDC88B-203ENST00000359902 ABHD14A-ACY1A0A1B0GW23 586 aa20.46■□□□□ 0.87
CCDC88B-203ENST00000359902 ARNTLO00327 626 aa20.46■□□□□ 0.87
CCDC88B-203ENST00000359902 RSL1D1O76021 490 aaKnown RBP20.46■□□□□ 0.87
CCDC88B-203ENST00000359902 SRCP12931 536 aa20.46■□□□□ 0.87
CCDC88B-203ENST00000359902 CCL5P13501 91 aa20.46■□□□□ 0.87
CCDC88B-203ENST00000359902 GJA1P17302 382 aa20.46■□□□□ 0.87
CCDC88B-203ENST00000359902 SOX11P35716 441 aa20.46■□□□□ 0.87
CCDC88B-203ENST00000359902 TFAP2CQ92754 450 aa20.46■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms