RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 PTRHD1Q6GMV3 140 aaKnown RBP12.64□□□□□ -0.39
CLK3-201ENST00000345005 RAB44Q7Z6P3 723 aaPredicted RBP12.64□□□□□ -0.39
CLK3-201ENST00000345005 NXPE1Q8N323 547 aa12.64□□□□□ -0.39
CLK3-201ENST00000345005 ZNF781Q8N8C0 355 aa12.64□□□□□ -0.39
CLK3-201ENST00000345005 NXPE3Q969Y0 559 aa12.64□□□□□ -0.39
CLK3-201ENST00000345005 ELSPBP1Q96BH3 223 aa12.64□□□□□ -0.39
CLK3-201ENST00000345005 ULK4Q96C45 1275 aa12.64□□□□□ -0.39
CLK3-201ENST00000345005 MYADMQ96S97 322 aa12.64□□□□□ -0.39
CLK3-201ENST00000345005 CDRT15Q96T59 188 aa12.64□□□□□ -0.39
CLK3-201ENST00000345005 EML4Q9HC35 981 aaKnown RBP12.64□□□□□ -0.39
CLK3-201ENST00000345005 RIMS3Q9UJD0 308 aa12.64□□□□□ -0.39
CLK3-201ENST00000345005 DHRS7Q9Y394 339 aa12.64□□□□□ -0.39
CLK3-201ENST00000345005 LRRK1Q38SD2 2015 aa12.63□□□□□ -0.39
CLK3-201ENST00000345005 PRSS51A0A1B0GVH4 220 aa12.63□□□□□ -0.39
CLK3-201ENST00000345005 NEMP2A6NFY4 417 aa12.63□□□□□ -0.39
CLK3-201ENST00000345005 CCDC160A6NGH7 325 aa12.63□□□□□ -0.39
CLK3-201ENST00000345005 SYCE1LA8MT33 242 aa12.63□□□□□ -0.39
CLK3-201ENST00000345005 E9PBE3 544 aa12.63□□□□□ -0.39
CLK3-201ENST00000345005 TRIM38O00635 465 aa12.63□□□□□ -0.39
CLK3-201ENST00000345005 GPR39O43194 453 aa12.63□□□□□ -0.39
CLK3-201ENST00000345005 KLHL41O60662 606 aa12.63□□□□□ -0.39
CLK3-201ENST00000345005 KERAO60938 352 aa12.63□□□□□ -0.39
CLK3-201ENST00000345005 STAMBPO95630 424 aa12.63□□□□□ -0.39
CLK3-201ENST00000345005 CHRNGP07510 517 aa12.63□□□□□ -0.39
CLK3-201ENST00000345005 CTSLP07711 333 aa12.63□□□□□ -0.39
CLK3-201ENST00000345005 C1SP09871 688 aa12.63□□□□□ -0.39
CLK3-201ENST00000345005 STX5Q13190 355 aa12.63□□□□□ -0.39
CLK3-201ENST00000345005 NADK2Q4G0N4 442 aa12.63□□□□□ -0.39
CLK3-201ENST00000345005 SNX32Q86XE0 403 aa12.63□□□□□ -0.39
CLK3-201ENST00000345005 ERI1Q8IV48 349 aaKnown RBP12.63□□□□□ -0.39
CLK3-201ENST00000345005 LSMEM2Q8N112 164 aa12.63□□□□□ -0.39
CLK3-201ENST00000345005 TERB1Q8NA31 727 aa12.63□□□□□ -0.39
CLK3-201ENST00000345005 SIDT2Q8NBJ9 832 aaKnown RBP12.63□□□□□ -0.39
CLK3-201ENST00000345005 TMIEQ8NEW7 156 aa12.63□□□□□ -0.39
CLK3-201ENST00000345005 CD200R1Q8TD46 325 aa12.63□□□□□ -0.39
CLK3-201ENST00000345005 L3HYPDHQ96EM0 354 aa12.63□□□□□ -0.39
CLK3-201ENST00000345005 PDLIM5Q96HC4 596 aaKnown RBP12.63□□□□□ -0.39
CLK3-201ENST00000345005 MRPL1Q9BYD6 325 aaKnown RBP12.63□□□□□ -0.39
CLK3-201ENST00000345005 RBM38Q9H0Z9 239 aaKnown RBP12.63□□□□□ -0.39
CLK3-201ENST00000345005 S1PR5Q9H228 398 aa12.63□□□□□ -0.39
CLK3-201ENST00000345005 MTG2Q9H4K7 406 aa12.63□□□□□ -0.39
CLK3-201ENST00000345005 PCDH12Q9NPG4 1184 aa12.63□□□□□ -0.39
CLK3-201ENST00000345005 CLEC1BQ9P126 229 aa12.63□□□□□ -0.39
CLK3-201ENST00000345005 GALPQ9UBC7 116 aa12.63□□□□□ -0.39
CLK3-201ENST00000345005 MTF2Q9Y483 593 aaPredicted RBP12.63□□□□□ -0.39
CLK3-201ENST00000345005 COL4A3Q01955 1670 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 A0A1B0GVG6 124 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 TBC1D3BA6NDS4 549 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 C16orf96A6NNT2 1141 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 PFDN1O60925 122 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 LAMP2P13473 410 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 ETS2P15036 469 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 KCNA5P22460 613 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 GJA4P35212 333 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 OPRD1P41143 372 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 EIF2DP41214 584 aaKnown RBP12.62□□□□□ -0.39
CLK3-201ENST00000345005 MTHFRP42898 656 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 ERFP50548 548 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 PSMD7P51665 324 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 CLCN7P51798 805 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 MESP2Q0VG99 397 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 GALNT1Q10472 559 aaPredicted RBP12.62□□□□□ -0.39
CLK3-201ENST00000345005 OR4D1Q15615 310 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 HNRNPA1L2Q32P51 320 aaKnown RBP12.62□□□□□ -0.39
CLK3-201ENST00000345005 SLC9B1Q4ZJI4 515 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 MACC1Q6ZN28 852 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 NUDT18Q6ZVK8 323 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 SPNS2Q8IVW8 549 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 ST13P5Q8NFI4 369 aaPredicted RBP12.62□□□□□ -0.39
CLK3-201ENST00000345005 OR8D1Q8WZ84 308 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 PHF21BQ96EK2 531 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 DUS3LQ96G46 650 aaKnown RBP12.62□□□□□ -0.39
CLK3-201ENST00000345005 ATOH8Q96SQ7 321 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 TRMOQ9BU70 441 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 NUF2Q9BZD4 464 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 PLA2G2FQ9BZM2 168 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 WDR41Q9HAD4 459 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 CYP4F12Q9HCS2 524 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 C8orf4Q9NR00 106 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 TUBA8Q9NY65 449 aaPredicted RBP12.62□□□□□ -0.39
CLK3-201ENST00000345005 ZDHHC3Q9NYG2 299 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 SUCOQ9UBS9 1254 aaKnown RBP12.62□□□□□ -0.39
CLK3-201ENST00000345005 RNF112Q9ULX5 631 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 A0A1W2PPC1 479 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 ZNF701M0R085 212 aaPredicted RBP12.62□□□□□ -0.39
CLK3-201ENST00000345005 TRMUO75648 421 aaKnown RBP12.62□□□□□ -0.39
CLK3-201ENST00000345005 PGM3O95394 542 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 MPSTP25325 297 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 CA5AP35218 305 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 NSG1P42857 185 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 DCDC1P59894 354 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 HERVK_113P63132 956 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 TXNL4AP83876 142 aaKnown RBP12.62□□□□□ -0.39
CLK3-201ENST00000345005 HPCAP84074 193 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 LRRC73Q5JTD7 316 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 C9orf64Q5T6V5 341 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 VWA5B1Q5TIE3 1220 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 ERAP2Q6P179 960 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 DPPA4Q7L190 304 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 ZNF366Q8N895 744 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms