RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 SUGP1Q8IWZ8 645 aaKnown RBP13.15□□□□□ -0.3
HMGB1-202ENST00000339872 AADATQ8N5Z0 425 aa13.15□□□□□ -0.3
HMGB1-202ENST00000339872 TWIST2Q8WVJ9 160 aa13.15□□□□□ -0.3
HMGB1-202ENST00000339872 C19orf60Q96EN9 201 aa13.15□□□□□ -0.3
HMGB1-202ENST00000339872 TAS2R1Q9NYW7 299 aa13.15□□□□□ -0.3
HMGB1-202ENST00000339872 WWOXQ9NZC7 414 aa13.15□□□□□ -0.3
HMGB1-202ENST00000339872 TNPO3Q9Y5L0 923 aaKnown RBP13.15□□□□□ -0.3
HMGB1-202ENST00000339872 ATP6AP2A0A1C7CYW4 349 aa13.14□□□□□ -0.31
HMGB1-202ENST00000339872 MEI4A8MW99 385 aa13.14□□□□□ -0.31
HMGB1-202ENST00000339872 NPC1O15118 1278 aa13.14□□□□□ -0.31
HMGB1-202ENST00000339872 TSPAN6O43657 245 aa13.14□□□□□ -0.31
HMGB1-202ENST00000339872 NUAK1O60285 661 aa13.14□□□□□ -0.31
HMGB1-202ENST00000339872 ATP6AP2O75787 350 aa13.14□□□□□ -0.31
HMGB1-202ENST00000339872 PRDX3P30048 256 aaKnown RBP13.14□□□□□ -0.31
HMGB1-202ENST00000339872 ARL1P40616 181 aaPredicted RBP13.14□□□□□ -0.31
HMGB1-202ENST00000339872 HSPA7P48741 367 aa13.14□□□□□ -0.31
HMGB1-202ENST00000339872 E2F5Q15329 346 aa13.14□□□□□ -0.31
HMGB1-202ENST00000339872 PCBP2Q15366 365 aaKnown RBP eCLIP13.14□□□□□ -0.31
HMGB1-202ENST00000339872 SYVN1Q86TM6 617 aa13.14□□□□□ -0.31
HMGB1-202ENST00000339872 FBXO27Q8NI29 283 aa13.14□□□□□ -0.31
HMGB1-202ENST00000339872 ACTRT2Q8TDY3 377 aa13.14□□□□□ -0.31
HMGB1-202ENST00000339872 PTBP2Q9UKA9 531 aaKnown RBP13.14□□□□□ -0.31
HMGB1-202ENST00000339872 TMEM202A6NGA9 273 aa13.14□□□□□ -0.31
HMGB1-202ENST00000339872 PIP5K1BO14986 540 aa13.14□□□□□ -0.31
HMGB1-202ENST00000339872 TAPBPO15533 448 aa13.14□□□□□ -0.31
HMGB1-202ENST00000339872 ATG13O75143 517 aa13.14□□□□□ -0.31
HMGB1-202ENST00000339872 ESRRBO95718 433 aa13.14□□□□□ -0.31
HMGB1-202ENST00000339872 ADH1BP00325 375 aa13.14□□□□□ -0.31
HMGB1-202ENST00000339872 PRLHRP49683 370 aa13.14□□□□□ -0.31
HMGB1-202ENST00000339872 CREB5Q02930 508 aa13.14□□□□□ -0.31
HMGB1-202ENST00000339872 NAA25Q14CX7 972 aa13.14□□□□□ -0.31
HMGB1-202ENST00000339872 SYTL3Q4VX76 610 aa13.14□□□□□ -0.31
HMGB1-202ENST00000339872 AGBL4Q5VU57 503 aa13.14□□□□□ -0.31
HMGB1-202ENST00000339872 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP13.14□□□□□ -0.31
HMGB1-202ENST00000339872 MBOAT1Q6ZNC8 495 aa13.14□□□□□ -0.31
HMGB1-202ENST00000339872 UBE2R2Q712K3 238 aaPredicted RBP13.14□□□□□ -0.31
HMGB1-202ENST00000339872 GOLGA7Q7Z5G4 137 aa13.14□□□□□ -0.31
HMGB1-202ENST00000339872 DDIASQ8IXT1 998 aa13.14□□□□□ -0.31
HMGB1-202ENST00000339872 DCBLD1Q8N8Z6 715 aa13.14□□□□□ -0.31
HMGB1-202ENST00000339872 RBM15BQ8NDT2 890 aaKnown RBP13.14□□□□□ -0.31
HMGB1-202ENST00000339872 ASZ1Q8WWH4 475 aa13.14□□□□□ -0.31
HMGB1-202ENST00000339872 CMTM5Q96DZ9 223 aa13.14□□□□□ -0.31
HMGB1-202ENST00000339872 CADM1Q9BY67 442 aaKnown RBP13.14□□□□□ -0.31
HMGB1-202ENST00000339872 ZNF385DQ9H6B1 395 aa13.14□□□□□ -0.31
HMGB1-202ENST00000339872 RDH14Q9HBH5 336 aa13.14□□□□□ -0.31
HMGB1-202ENST00000339872 CNOT6Q9ULM6 557 aaKnown RBP13.14□□□□□ -0.31
HMGB1-202ENST00000339872 PTGDR2Q9Y5Y4 395 aa13.14□□□□□ -0.31
HMGB1-202ENST00000339872 SPTBN5Q9NRC6 3674 aaKnown RBP13.14□□□□□ -0.31
HMGB1-202ENST00000339872 C2CD4DB7Z1M9 353 aa13.13□□□□□ -0.31
HMGB1-202ENST00000339872 CCNT2O60583 730 aaKnown RBP13.13□□□□□ -0.31
HMGB1-202ENST00000339872 MPC1LP0DKB6 136 aa13.13□□□□□ -0.31
HMGB1-202ENST00000339872 PBLDP30039 288 aaPredicted RBP13.13□□□□□ -0.31
HMGB1-202ENST00000339872 COPAP53621 1224 aa13.13□□□□□ -0.31
HMGB1-202ENST00000339872 DPTQ07507 201 aa13.13□□□□□ -0.31
HMGB1-202ENST00000339872 GTF2H2Q13888 395 aa13.13□□□□□ -0.31
HMGB1-202ENST00000339872 PON2Q15165 354 aa13.13□□□□□ -0.31
HMGB1-202ENST00000339872 SULT1C3Q6IMI6 304 aa13.13□□□□□ -0.31
HMGB1-202ENST00000339872 GTF2H2CQ6P1K8 395 aa13.13□□□□□ -0.31
HMGB1-202ENST00000339872 TMEM220Q6QAJ8 160 aa13.13□□□□□ -0.31
HMGB1-202ENST00000339872 GPRIN3Q6ZVF9 776 aa13.13□□□□□ -0.31
HMGB1-202ENST00000339872 HDDC3Q8N4P3 179 aa13.13□□□□□ -0.31
HMGB1-202ENST00000339872 OR52B6Q8NGF0 335 aa13.13□□□□□ -0.31
HMGB1-202ENST00000339872 MCUR1Q96AQ8 359 aa13.13□□□□□ -0.31
HMGB1-202ENST00000339872 RHBDF1Q96CC6 855 aa13.13□□□□□ -0.31
HMGB1-202ENST00000339872 C3orf30Q96M34 536 aa13.13□□□□□ -0.31
HMGB1-202ENST00000339872 FAM161BQ96MY7 647 aa13.13□□□□□ -0.31
HMGB1-202ENST00000339872 ZNF382Q96SR6 550 aa13.13□□□□□ -0.31
HMGB1-202ENST00000339872 TMEM79Q9BSE2 394 aa13.13□□□□□ -0.31
HMGB1-202ENST00000339872 ZCCHC2Q9C0B9 1178 aaKnown RBP13.13□□□□□ -0.31
HMGB1-202ENST00000339872 NOL11Q9H8H0 719 aaKnown RBP13.13□□□□□ -0.31
HMGB1-202ENST00000339872 SERGEFQ9UGK8 458 aa13.13□□□□□ -0.31
HMGB1-202ENST00000339872 ZNF225Q9UK10 706 aa13.13□□□□□ -0.31
HMGB1-202ENST00000339872 BTRCQ9Y297 605 aa13.13□□□□□ -0.31
HMGB1-202ENST00000339872 TIMM22Q9Y584 194 aa13.13□□□□□ -0.31
HMGB1-202ENST00000339872 COPG1Q9Y678 874 aaKnown RBP13.13□□□□□ -0.31
HMGB1-202ENST00000339872 LOC100653049A0A140TA62 436 aa13.13□□□□□ -0.31
HMGB1-202ENST00000339872 A0A1W2PP55 124 aa13.13□□□□□ -0.31
HMGB1-202ENST00000339872 GRXCR2A6NFK2 248 aa13.13□□□□□ -0.31
HMGB1-202ENST00000339872 A8MUI8 341 aa13.13□□□□□ -0.31
HMGB1-202ENST00000339872 KRT34O76011 436 aa13.13□□□□□ -0.31
HMGB1-202ENST00000339872 OR4F21O95013 312 aa13.13□□□□□ -0.31
HMGB1-202ENST00000339872 PCDH8O95206 1070 aa13.13□□□□□ -0.31
HMGB1-202ENST00000339872 EGFP01133 1207 aa13.13□□□□□ -0.31
HMGB1-202ENST00000339872 C8GP07360 202 aa13.13□□□□□ -0.31
HMGB1-202ENST00000339872 COX4I1P13073 169 aa13.13□□□□□ -0.31
HMGB1-202ENST00000339872 C5AR1P21730 350 aa13.13□□□□□ -0.31
HMGB1-202ENST00000339872 PIK3R1P27986 724 aa13.13□□□□□ -0.31
HMGB1-202ENST00000339872 NTSR1P30989 418 aa13.13□□□□□ -0.31
HMGB1-202ENST00000339872 RPIAP49247 311 aa13.13□□□□□ -0.31
HMGB1-202ENST00000339872 TAS2R38P59533 333 aa13.13□□□□□ -0.31
HMGB1-202ENST00000339872 ZNF776Q68DI1 518 aaPredicted RBP13.13□□□□□ -0.31
HMGB1-202ENST00000339872 KIAA1211LQ6NV74 962 aa13.13□□□□□ -0.31
HMGB1-202ENST00000339872 TMPRSS6Q8IU80 811 aa13.13□□□□□ -0.31
HMGB1-202ENST00000339872 CPSF7Q8N684 471 aaKnown RBP13.13□□□□□ -0.31
HMGB1-202ENST00000339872 LENG8Q96PV6 779 aaPredicted RBP13.13□□□□□ -0.31
HMGB1-202ENST00000339872 CDK15Q96Q40 435 aa13.13□□□□□ -0.31
HMGB1-202ENST00000339872 HEBP1Q9NRV9 189 aa13.13□□□□□ -0.31
HMGB1-202ENST00000339872 ARL15Q9NXU5 204 aa13.13□□□□□ -0.31
HMGB1-202ENST00000339872 PDE10AQ9Y233 779 aa13.13□□□□□ -0.31
HMGB1-202ENST00000339872 PIAS3Q9Y6X2 628 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms