RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 ARSEP51690 589 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 ACLYP53396 1101 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 CLCQ05315 142 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 IFRD2Q12894 506 aaPredicted RBP4.1□□□□□ -1.75
NEDD4-201ENST00000338963 DUSP4Q13115 394 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 CBLBQ13191 982 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 TMEM44Q2T9K0 475 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 TPGS2Q68CL5 300 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 SEL1L3Q68CR1 1132 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 FAM45BPQ6NSW5 357 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 LAYNQ6UX15 382 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 RTL4Q6ZR62 310 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 PYROXD2Q8N2H3 581 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 SLC43A2Q8N370 569 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 PARP16Q8N5Y8 322 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 FAM45AQ8TCE6 357 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 IGDCC4Q8TDY8 1250 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 KAT2AQ92830 837 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 TMEM203Q969S6 136 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 OR5M11Q96RB7 305 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 CAMKK2Q96RR4 588 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 TBCBQ99426 244 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 AGPAT4Q9NRZ5 378 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 GCNT4Q9P109 453 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 DNMT3BQ9UBC3 853 aaKnown RBP4.1□□□□□ -1.75
NEDD4-201ENST00000338963 ERVW-1Q9UQF0 538 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 DLGAP4Q9Y2H0 992 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 AIPO00170 330 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 SLC28A1O00337 649 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 MRASO14807 208 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 GPAA1O43292 621 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 ZNF623O75123 536 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 RPP14O95059 124 aaKnown RBP4.1□□□□□ -1.75
NEDD4-201ENST00000338963 SERPINA5P05154 406 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 NELFEP18615 380 aaKnown RBP4.1□□□□□ -1.75
NEDD4-201ENST00000338963 MAPK1P28482 360 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 RYKP34925 604 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 SPRP35270 261 aaPredicted RBP4.1□□□□□ -1.75
NEDD4-201ENST00000338963 GRIK2Q13002 908 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 UAP1L1Q3KQV9 507 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 PABPC1L2AQ5JQF8 200 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 C6orf141Q5SZD1 244 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 PKN3Q6P5Z2 889 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 POMZP3Q6PJE2 187 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 KCNT2Q6UVM3 1135 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 SEZ6L2Q6UXD5 910 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 CYS1Q717R9 158 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 ADGRD2Q7Z7M1 963 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 CMTR1Q8N1G2 835 aaKnown RBP4.1□□□□□ -1.75
NEDD4-201ENST00000338963 FBXO27Q8NI29 283 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 STRBPQ96SI9 672 aaKnown RBP4.1□□□□□ -1.75
NEDD4-201ENST00000338963 GDF15Q99988 308 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 EIF2AK1Q9BQI3 630 aaKnown RBP4.1□□□□□ -1.75
NEDD4-201ENST00000338963 ZPBPQ9BS86 351 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 C12orf65Q9H3J6 166 aaKnown RBP4.1□□□□□ -1.75
NEDD4-201ENST00000338963 MBD1Q9UIS9 605 aaPredicted RBP4.1□□□□□ -1.75
NEDD4-201ENST00000338963 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP4.1□□□□□ -1.75
NEDD4-201ENST00000338963 MFSD2BA6NFX1 497 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 EFCAB9A8MZ26 197 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 CACNB4O00305 520 aaPredicted RBP4.1□□□□□ -1.75
NEDD4-201ENST00000338963 OAZ2O95190 189 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 GH2P01242 217 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 CD63P08962 238 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 KCNA5P22460 613 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 CLCN4P51793 760 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 CLCN5P51795 746 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 KCNK10P57789 538 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 ZNF177Q13360 481 aaPredicted RBP4.1□□□□□ -1.75
NEDD4-201ENST00000338963 AQP6Q13520 282 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 GK3PQ14409 553 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 KLHL17Q6TDP4 642 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 FJX1Q86VR8 437 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 PPM1NQ8N819 430 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 OR6B3Q8NGW1 331 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 ATG4AQ8WYN0 398 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 RCN3Q96D15 328 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 LGALS12Q96DT0 336 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 DGCR6LQ9BY27 220 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 UGT2B28Q9BY64 529 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 NXF2Q9GZY0 626 aaKnown RBP4.1□□□□□ -1.75
NEDD4-201ENST00000338963 THAP2Q9H0W7 228 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 TLR9Q9NR96 1032 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 NUDT15Q9NV35 164 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 TMEM45AQ9NWC5 275 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 OR6C2Q9NZP2 312 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 RCOR3Q9P2K3 495 aaPredicted RBP4.1□□□□□ -1.75
NEDD4-201ENST00000338963 ROBO3Q96MS0 1386 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 A0A1W2PPL8 197 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 MYMKA6NI61 221 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 E7ESA3 106 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 M0QZK8 103 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 LZTS3O60299 673 aaPredicted RBP4.1□□□□□ -1.75
NEDD4-201ENST00000338963 LRCH4O75427 683 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 GCNT3O95395 438 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 PVALBP20472 110 aaPredicted RBP4.1□□□□□ -1.75
NEDD4-201ENST00000338963 PAICSP22234 425 aaKnown RBP4.1□□□□□ -1.75
NEDD4-201ENST00000338963 PIK3CBP42338 1070 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 EPHA4P54764 986 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 GPS1Q13098 491 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 CHRNA6Q15825 494 aa4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms