RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 SAR1BQ9Y6B6 198 aa15.48■□□□□ 0.07
CLN3-201ENST00000333496 CTAGE9A4FU28 777 aa15.47■□□□□ 0.07
CLN3-201ENST00000333496 HGSO14964 777 aaPredicted RBP15.47■□□□□ 0.07
CLN3-201ENST00000333496 UBXN7O94888 489 aa15.47■□□□□ 0.07
CLN3-201ENST00000333496 AP2A2O94973 939 aa15.47■□□□□ 0.07
CLN3-201ENST00000333496 TYRP1P17643 537 aa15.47■□□□□ 0.07
CLN3-201ENST00000333496 ARNTP27540 789 aa15.47■□□□□ 0.07
CLN3-201ENST00000333496 MLLT3P42568 568 aaPredicted RBP15.47■□□□□ 0.07
CLN3-201ENST00000333496 PPM1FP49593 454 aaPredicted RBP15.47■□□□□ 0.07
CLN3-201ENST00000333496 TRA2AQ13595 282 aaKnown RBP eCLIP15.47■□□□□ 0.07
CLN3-201ENST00000333496 SDK2Q58EX2 2172 aa15.47■□□□□ 0.07
CLN3-201ENST00000333496 DUS1LQ6P1R4 473 aaKnown RBP15.47■□□□□ 0.07
CLN3-201ENST00000333496 CES3Q6UWW8 571 aa15.47■□□□□ 0.07
CLN3-201ENST00000333496 CLEC14AQ86T13 490 aa15.47■□□□□ 0.07
CLN3-201ENST00000333496 LDB1Q86U70 411 aaPredicted RBP15.47■□□□□ 0.07
CLN3-201ENST00000333496 RBM12BQ8IXT5 1001 aaKnown RBP15.47■□□□□ 0.07
CLN3-201ENST00000333496 NAT8LQ8N9F0 302 aa15.47■□□□□ 0.07
CLN3-201ENST00000333496 TMEM159Q96B96 161 aa15.47■□□□□ 0.07
CLN3-201ENST00000333496 RMDN2Q96LZ7 410 aa15.47■□□□□ 0.07
CLN3-201ENST00000333496 C12orf66Q96MD2 445 aa15.47■□□□□ 0.07
CLN3-201ENST00000333496 EPB41L1Q9H4G0 881 aa15.47■□□□□ 0.07
CLN3-201ENST00000333496 COG4Q9H9E3 785 aa15.47■□□□□ 0.07
CLN3-201ENST00000333496 MRM3Q9HC36 420 aaKnown RBP15.47■□□□□ 0.07
CLN3-201ENST00000333496 THSD1Q9NS62 852 aa15.47■□□□□ 0.07
CLN3-201ENST00000333496 MARCH4Q9P2E8 410 aaPredicted RBP15.47■□□□□ 0.07
CLN3-201ENST00000333496 PISDQ9UG56 409 aa15.47■□□□□ 0.07
CLN3-201ENST00000333496 PCYOX1Q9UHG3 505 aa15.47■□□□□ 0.07
CLN3-201ENST00000333496 SOX13Q9UN79 622 aa15.47■□□□□ 0.07
CLN3-201ENST00000333496 JMJD7P0C870 316 aa15.46■□□□□ 0.07
CLN3-201ENST00000333496 MTHFD1P11586 935 aaKnown RBP15.46■□□□□ 0.07
CLN3-201ENST00000333496 CCL4P13236 92 aa15.46■□□□□ 0.07
CLN3-201ENST00000333496 ITPKBP27987 946 aa15.46■□□□□ 0.07
CLN3-201ENST00000333496 PDHA2P29803 388 aa15.46■□□□□ 0.07
CLN3-201ENST00000333496 PTGIRP43119 386 aa15.46■□□□□ 0.07
CLN3-201ENST00000333496 GFERP55789 205 aa15.46■□□□□ 0.07
CLN3-201ENST00000333496 FASTKD1Q53R41 847 aaKnown RBP15.46■□□□□ 0.07
CLN3-201ENST00000333496 ARHGAP22Q7Z5H3 698 aa15.46■□□□□ 0.07
CLN3-201ENST00000333496 MCUQ8NE86 351 aa15.46■□□□□ 0.07
CLN3-201ENST00000333496 RSC1A1Q92681 617 aa15.46■□□□□ 0.07
CLN3-201ENST00000333496 SLCO2A1Q92959 643 aa15.46■□□□□ 0.07
CLN3-201ENST00000333496 TRIM56Q9BRZ2 755 aaKnown RBP15.46■□□□□ 0.07
CLN3-201ENST00000333496 OR52A5Q9H2C5 316 aa15.46■□□□□ 0.07
CLN3-201ENST00000333496 IMP3Q9NV31 184 aaKnown RBP15.46■□□□□ 0.07
CLN3-201ENST00000333496 MN1Q10571 1320 aaPredicted RBP15.46■□□□□ 0.07
CLN3-201ENST00000333496 A8MU76 341 aa15.46■□□□□ 0.06
CLN3-201ENST00000333496 GOLGA8MH3BSY2 632 aa15.46■□□□□ 0.06
CLN3-201ENST00000333496 URI1O94763 535 aaPredicted RBP15.46■□□□□ 0.06
CLN3-201ENST00000333496 C9P02748 559 aa15.46■□□□□ 0.06
CLN3-201ENST00000333496 FGF3P11487 239 aaPredicted RBP15.46■□□□□ 0.06
CLN3-201ENST00000333496 MLNP12872 115 aa15.46■□□□□ 0.06
CLN3-201ENST00000333496 SLC5A2P31639 672 aa15.46■□□□□ 0.06
CLN3-201ENST00000333496 PCBP4P57723 403 aaKnown RBP15.46■□□□□ 0.06
CLN3-201ENST00000333496 SARNPP82979 210 aaKnown RBP15.46■□□□□ 0.06
CLN3-201ENST00000333496 SNAP47Q5SQN1 464 aa15.46■□□□□ 0.06
CLN3-201ENST00000333496 LYPLAL1Q5VWZ2 237 aa15.46■□□□□ 0.06
CLN3-201ENST00000333496 CERS6Q6ZMG9 384 aa15.46■□□□□ 0.06
CLN3-201ENST00000333496 AGGF1Q8N302 714 aaeCLIP15.46■□□□□ 0.06
CLN3-201ENST00000333496 HNRNPLLQ8WVV9 542 aaKnown RBP15.46■□□□□ 0.06
CLN3-201ENST00000333496 JPH3Q8WXH2 748 aaPredicted RBP15.46■□□□□ 0.06
CLN3-201ENST00000333496 TBRG4Q969Z0 631 aaKnown RBP eCLIP15.46■□□□□ 0.06
CLN3-201ENST00000333496 NAF1Q96HR8 494 aaKnown RBP15.46■□□□□ 0.06
CLN3-201ENST00000333496 SERPINB12Q96P63 405 aa15.46■□□□□ 0.06
CLN3-201ENST00000333496 ZMYND15Q9H091 742 aa15.46■□□□□ 0.06
CLN3-201ENST00000333496 CATSPERZQ9NTU4 200 aa15.46■□□□□ 0.06
CLN3-201ENST00000333496 CD3EAPO15446 510 aaKnown RBP15.45■□□□□ 0.06
CLN3-201ENST00000333496 SLC35G4P0C7Q5 338 aa15.45■□□□□ 0.06
CLN3-201ENST00000333496 AMD1P17707 334 aa15.45■□□□□ 0.06
CLN3-201ENST00000333496 MAGEA3P43357 314 aa15.45■□□□□ 0.06
CLN3-201ENST00000333496 PPP1R7Q15435 360 aa15.45■□□□□ 0.06
CLN3-201ENST00000333496 RNASEH2BQ5TBB1 312 aaKnown RBP15.45■□□□□ 0.06
CLN3-201ENST00000333496 C19orf48Q6RUI8 117 aa15.45■□□□□ 0.06
CLN3-201ENST00000333496 NAPRTQ6XQN6 538 aa15.45■□□□□ 0.06
CLN3-201ENST00000333496 ZNF248Q8NDW4 579 aa15.45■□□□□ 0.06
CLN3-201ENST00000333496 VPS37BQ9H9H4 285 aa15.45■□□□□ 0.06
CLN3-201ENST00000333496 OCIAD1Q9NX40 245 aa15.45■□□□□ 0.06
CLN3-201ENST00000333496 KLHL3Q9UH77 587 aa15.45■□□□□ 0.06
CLN3-201ENST00000333496 PCDHGA7Q9Y5G6 932 aa15.45■□□□□ 0.06
CLN3-201ENST00000333496 C9orf172C9J069 976 aa15.44■□□□□ 0.06
CLN3-201ENST00000333496 QSOX1O00391 747 aa15.44■□□□□ 0.06
CLN3-201ENST00000333496 NVLO15381 856 aaKnown RBP15.44■□□□□ 0.06
CLN3-201ENST00000333496 VAPBO95292 243 aa15.44■□□□□ 0.06
CLN3-201ENST00000333496 GSTM1P09488 218 aa15.44■□□□□ 0.06
CLN3-201ENST00000333496 IVDP26440 423 aa15.44■□□□□ 0.06
CLN3-201ENST00000333496 CAPZBP47756 277 aa15.44■□□□□ 0.06
CLN3-201ENST00000333496 PREPP48147 710 aa15.44■□□□□ 0.06
CLN3-201ENST00000333496 ARCN1P48444 511 aaKnown RBP15.44■□□□□ 0.06
CLN3-201ENST00000333496 MAPK10P53779 464 aa15.44■□□□□ 0.06
CLN3-201ENST00000333496 GSTM4Q03013 218 aa15.44■□□□□ 0.06
CLN3-201ENST00000333496 PTK6Q13882 451 aa15.44■□□□□ 0.06
CLN3-201ENST00000333496 PLXDC1Q8IUK5 500 aa15.44■□□□□ 0.06
CLN3-201ENST00000333496 BMPERQ8N8U9 685 aa15.44■□□□□ 0.06
CLN3-201ENST00000333496 AGBL5Q8NDL9 886 aa15.44■□□□□ 0.06
CLN3-201ENST00000333496 USP7Q93009 1102 aa15.44■□□□□ 0.06
CLN3-201ENST00000333496 PMEPA1Q969W9 287 aa15.44■□□□□ 0.06
CLN3-201ENST00000333496 FCRL3Q96P31 734 aaPredicted RBP15.44■□□□□ 0.06
CLN3-201ENST00000333496 TTC1Q99614 292 aa15.44■□□□□ 0.06
CLN3-201ENST00000333496 ANAPC5Q9UJX4 755 aa15.44■□□□□ 0.06
CLN3-201ENST00000333496 AHCTF1Q8WYP5 2266 aa15.43■□□□□ 0.06
CLN3-201ENST00000333496 GOLGA8KD6RF30 607 aa15.43■□□□□ 0.06
CLN3-201ENST00000333496 GOLGA8TH3BQL2 631 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms