RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 NFKBIAP25963 317 aa12.72□□□□□ -0.37
SPTLC1-201ENST00000262554 HMOX2P30519 316 aa12.72□□□□□ -0.37
SPTLC1-201ENST00000262554 FOXM1Q08050 763 aa12.72□□□□□ -0.37
SPTLC1-201ENST00000262554 PHKG1Q16816 387 aa12.72□□□□□ -0.37
SPTLC1-201ENST00000262554 GRAMD1BQ3KR37 738 aa12.72□□□□□ -0.37
SPTLC1-201ENST00000262554 LRRC73Q5JTD7 316 aa12.72□□□□□ -0.37
SPTLC1-201ENST00000262554 C6orf136Q5SQH8 315 aa12.72□□□□□ -0.37
SPTLC1-201ENST00000262554 OGFRL1Q5TC84 451 aaPredicted RBP12.72□□□□□ -0.37
SPTLC1-201ENST00000262554 IL27RAQ6UWB1 636 aa12.72□□□□□ -0.37
SPTLC1-201ENST00000262554 GRASPQ7Z6J2 395 aaPredicted RBP12.72□□□□□ -0.37
SPTLC1-201ENST00000262554 MILR1Q7Z6M3 343 aa12.72□□□□□ -0.37
SPTLC1-201ENST00000262554 MINDY1Q8N5J2 469 aa12.72□□□□□ -0.37
SPTLC1-201ENST00000262554 NAT16Q8N8M0 369 aa12.72□□□□□ -0.37
SPTLC1-201ENST00000262554 FNDC5Q8NAU1 212 aa12.72□□□□□ -0.37
SPTLC1-201ENST00000262554 CATSPER1Q8NEC5 780 aa12.72□□□□□ -0.37
SPTLC1-201ENST00000262554 UBTD2Q8WUN7 234 aa12.72□□□□□ -0.37
SPTLC1-201ENST00000262554 HERVK_113Q902F9 699 aa12.72□□□□□ -0.37
SPTLC1-201ENST00000262554 SPDL1Q96EA4 605 aa12.72□□□□□ -0.37
SPTLC1-201ENST00000262554 ZSWIM3Q96MP5 696 aa12.72□□□□□ -0.37
SPTLC1-201ENST00000262554 GPATCH1Q9BRR8 931 aaKnown RBP12.72□□□□□ -0.37
SPTLC1-201ENST00000262554 CD244Q9BZW8 370 aa12.72□□□□□ -0.37
SPTLC1-201ENST00000262554 TMEM45AQ9NWC5 275 aa12.72□□□□□ -0.37
SPTLC1-201ENST00000262554 SUN2Q9UH99 717 aa12.72□□□□□ -0.37
SPTLC1-201ENST00000262554 ST14Q9Y5Y6 855 aa12.72□□□□□ -0.37
SPTLC1-201ENST00000262554 A0A1W2PP18 115 aa12.71□□□□□ -0.37
SPTLC1-201ENST00000262554 LINC01553A4QN01 128 aa12.71□□□□□ -0.37
SPTLC1-201ENST00000262554 KATNA1O75449 491 aa12.71□□□□□ -0.37
SPTLC1-201ENST00000262554 C8BP07358 591 aa12.71□□□□□ -0.37
SPTLC1-201ENST00000262554 VIPR1P32241 457 aa12.71□□□□□ -0.37
SPTLC1-201ENST00000262554 IRS1P35568 1242 aa12.71□□□□□ -0.37
SPTLC1-201ENST00000262554 B4GALNT1Q00973 533 aa12.71□□□□□ -0.37
SPTLC1-201ENST00000262554 TRAF3Q13114 568 aa12.71□□□□□ -0.37
SPTLC1-201ENST00000262554 ADGRE1Q14246 886 aa12.71□□□□□ -0.37
SPTLC1-201ENST00000262554 SFT2D3Q587I9 215 aa12.71□□□□□ -0.37
SPTLC1-201ENST00000262554 RFLNAQ6ZTI6 216 aa12.71□□□□□ -0.37
SPTLC1-201ENST00000262554 HOMEZQ8IX15 550 aa12.71□□□□□ -0.37
SPTLC1-201ENST00000262554 ICA1LQ8NDH6 482 aa12.71□□□□□ -0.37
SPTLC1-201ENST00000262554 ING5Q8WYH8 240 aa12.71□□□□□ -0.37
SPTLC1-201ENST00000262554 RHBDF1Q96CC6 855 aa12.71□□□□□ -0.37
SPTLC1-201ENST00000262554 SLC39A3Q9BRY0 314 aa12.71□□□□□ -0.37
SPTLC1-201ENST00000262554 C1orf50Q9BV19 199 aa12.71□□□□□ -0.37
SPTLC1-201ENST00000262554 SPATA16Q9BXB7 569 aa12.71□□□□□ -0.37
SPTLC1-201ENST00000262554 PCDHAC1Q9H158 963 aa12.71□□□□□ -0.37
SPTLC1-201ENST00000262554 ABCG8Q9H221 673 aa12.71□□□□□ -0.37
SPTLC1-201ENST00000262554 VCXQ9H320 206 aa12.71□□□□□ -0.37
SPTLC1-201ENST00000262554 COPS7BQ9H9Q2 264 aaPredicted RBP12.71□□□□□ -0.37
SPTLC1-201ENST00000262554 IL1RL2Q9HB29 575 aa12.71□□□□□ -0.37
SPTLC1-201ENST00000262554 ZIM2Q9NZV7 527 aa12.71□□□□□ -0.37
SPTLC1-201ENST00000262554 DTNAQ9Y4J8 743 aa12.71□□□□□ -0.37
SPTLC1-201ENST00000262554 PRSS51A0A1B0GVH4 220 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 MAGEA13PA6NCF6 341 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 EIF4E1BA6NMX2 242 aaKnown RBP12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 C9JVG2 144 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 CEBPBP17676 345 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 MSH3P20585 1137 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 AKT1P31749 480 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 PIK3CGP48736 1102 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 POLR2JP52435 117 aaKnown RBP12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 AQP4P55087 323 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 RHDQ02161 417 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 RCAN2Q14206 197 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 CDKL4Q5MAI5 379 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 ZNF697Q5TEC3 545 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 TMEM215Q68D42 235 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 TMEM154Q6P9G4 183 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 Q6ZSR9 355 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 DHFR2Q86XF0 187 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 CYB5D2Q8WUJ1 264 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 UCMAQ8WVF2 138 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 LRRC58Q96CX6 371 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 DCUN1D1Q96GG9 259 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 TMEM79Q9BSE2 394 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 EBF3Q9H4W6 596 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 YY1AP1Q9H869 796 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 ABCD2Q9UBJ2 740 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 DPP7Q9UHL4 492 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 CD84Q9UIB8 345 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 SCOCQ9UIL1 159 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 RIMS3Q9UJD0 308 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 FAM234BA2RU67 622 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 C2orf72A6NCS6 295 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 CCDC154A6NI56 674 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 TTC34A8MYJ7 566 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 C5orf67F2Z3F1 127 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 K7EPI3 171 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 LEFTY1O75610 366 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 SMNDC1O75940 238 aaKnown RBP eCLIP12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 ANXA5P08758 320 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 ATP1B2P14415 290 aaPredicted RBP12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 UQCRBP14927 111 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 XPAP23025 273 aaPredicted RBP12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 AOAHP28039 575 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 CCR7P32248 378 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 HTR6P50406 440 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 DCDC1P59894 354 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 UFM1P61960 85 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 EMX2Q04743 252 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 NFYCQ13952 458 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 NR6A1Q15406 480 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 SPATS1Q496A3 300 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms