RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 NAT16Q8N8M0 369 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 MAGEE2Q8TD90 523 aaPredicted RBP10.11□□□□□ -0.79
VPS39-214ENST00000614932 BLOC1S5Q8TDH9 187 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 DNAJA4Q8WW22 397 aaPredicted RBP10.11□□□□□ -0.79
VPS39-214ENST00000614932 ZNF300Q96RE9 604 aaPredicted RBP10.11□□□□□ -0.79
VPS39-214ENST00000614932 CPXM1Q96SM3 734 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 LHX5Q9H2C1 402 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 MROH8Q9H579 483 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 NIPAL2Q9H841 368 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 PTPRHQ9HD43 1115 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 ING3Q9NXR8 418 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 NUFIP1Q9UHK0 495 aaKnown RBP10.11□□□□□ -0.79
VPS39-214ENST00000614932 SCML1Q9UN30 329 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 TEX264Q9Y6I9 313 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 SBF1O95248 1867 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 CXorf49A8MYA2 514 aaPredicted RBP10.11□□□□□ -0.79
VPS39-214ENST00000614932 H3BRB1 525 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 WDPCPO95876 746 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 DNAJB1P25685 340 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 SHMT2P34897 504 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 CPT1AP50416 773 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 DGKQP52824 942 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 NCS1P62166 190 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 SNRPD2P62316 118 aaKnown RBP10.11□□□□□ -0.79
VPS39-214ENST00000614932 RGS1Q08116 209 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 PCDH1Q08174 1060 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 ZNF484Q5JVG2 852 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 N4BP2L1Q5TBK1 243 aaPredicted RBP10.11□□□□□ -0.79
VPS39-214ENST00000614932 LRRC8EQ6NSJ5 796 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 RANBP10Q6VN20 620 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 NRARPQ7Z6K4 114 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 RETREG3Q86VR2 466 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 SPATA2LQ8IUW3 424 aaPredicted RBP10.11□□□□□ -0.79
VPS39-214ENST00000614932 SCUBE3Q8IX30 993 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 ZNF781Q8N8C0 355 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 SLC22A17Q8WUG5 538 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 YIPF5Q969M3 257 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 APOL4Q9BPW4 351 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 CDHR5Q9HBB8 845 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 ENTPD7Q9NQZ7 604 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 TMEM181Q9P2C4 612 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 KLHL42Q9P2K6 505 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 EMCNQ9ULC0 261 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 TLR6Q9Y2C9 796 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 PCDHB12Q9Y5F1 795 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 PCDHGB6Q9Y5F9 930 aa10.11□□□□□ -0.79
VPS39-214ENST00000614932 PRORSD1PA6NEY8 169 aa10.1□□□□□ -0.79
VPS39-214ENST00000614932 CCDC182A6NF36 153 aa10.1□□□□□ -0.79
VPS39-214ENST00000614932 TMEM191CA6NGB0 347 aa10.1□□□□□ -0.79
VPS39-214ENST00000614932 PPEF2O14830 753 aa10.1□□□□□ -0.79
VPS39-214ENST00000614932 PLIN3O60664 434 aa10.1□□□□□ -0.79
VPS39-214ENST00000614932 MED26O95402 600 aa10.1□□□□□ -0.79
VPS39-214ENST00000614932 HSMCR30P0CW71 290 aa10.1□□□□□ -0.79
VPS39-214ENST00000614932 ADORA3P0DMS8 318 aa10.1□□□□□ -0.79
VPS39-214ENST00000614932 PCMT1P22061 227 aa10.1□□□□□ -0.79
VPS39-214ENST00000614932 PSMA2P25787 234 aa10.1□□□□□ -0.79
VPS39-214ENST00000614932 RPL35P42766 123 aaKnown RBP10.1□□□□□ -0.79
VPS39-214ENST00000614932 AKR1D1P51857 326 aa10.1□□□□□ -0.79
VPS39-214ENST00000614932 FLI1Q01543 452 aaPredicted RBP10.1□□□□□ -0.79
VPS39-214ENST00000614932 SLC10A6Q3KNW5 377 aa10.1□□□□□ -0.79
VPS39-214ENST00000614932 THAP5Q7Z6K1 395 aa10.1□□□□□ -0.79
VPS39-214ENST00000614932 TSPYL5Q86VY4 417 aaPredicted RBP10.1□□□□□ -0.79
VPS39-214ENST00000614932 GPALPP1Q8IXQ4 340 aa10.1□□□□□ -0.79
VPS39-214ENST00000614932 ZNF565Q8N9K5 539 aa10.1□□□□□ -0.79
VPS39-214ENST00000614932 OR8H1Q8NGG4 311 aa10.1□□□□□ -0.79
VPS39-214ENST00000614932 ADAM32Q8TC27 787 aa10.1□□□□□ -0.79
VPS39-214ENST00000614932 FAR1Q8WVX9 515 aa10.1□□□□□ -0.79
VPS39-214ENST00000614932 BRI3BPQ8WY22 251 aa10.1□□□□□ -0.79
VPS39-214ENST00000614932 PIWIL1Q96J94 861 aaKnown RBP10.1□□□□□ -0.79
VPS39-214ENST00000614932 GAD1Q99259 594 aa10.1□□□□□ -0.79
VPS39-214ENST00000614932 BEX2Q9BXY8 128 aa10.1□□□□□ -0.79
VPS39-214ENST00000614932 PRRG3Q9BZD7 231 aa10.1□□□□□ -0.79
VPS39-214ENST00000614932 ELOVL4Q9GZR5 314 aa10.1□□□□□ -0.79
VPS39-214ENST00000614932 ZNF385DQ9H6B1 395 aa10.1□□□□□ -0.79
VPS39-214ENST00000614932 CATSPERBQ9H7T0 1116 aa10.1□□□□□ -0.79
VPS39-214ENST00000614932 ZBTB26Q9HCK0 441 aa10.1□□□□□ -0.79
VPS39-214ENST00000614932 TBC1D13Q9NVG8 400 aa10.1□□□□□ -0.79
VPS39-214ENST00000614932 SLC23A1Q9UHI7 598 aa10.1□□□□□ -0.79
VPS39-214ENST00000614932 ANAPC2Q9UJX6 822 aa10.1□□□□□ -0.79
VPS39-214ENST00000614932 AGO1Q9UL18 857 aaKnown RBP10.1□□□□□ -0.79
VPS39-214ENST00000614932 SNX6Q9UNH7 406 aa10.1□□□□□ -0.79
VPS39-214ENST00000614932 PDE10AQ9Y233 779 aa10.1□□□□□ -0.79
VPS39-214ENST00000614932 MFHAS1Q9Y4C4 1052 aa10.1□□□□□ -0.79
VPS39-214ENST00000614932 CCDC154A6NI56 674 aa10.1□□□□□ -0.79
VPS39-214ENST00000614932 M0QYV0 167 aa10.1□□□□□ -0.79
VPS39-214ENST00000614932 GLRA3O75311 464 aa10.1□□□□□ -0.79
VPS39-214ENST00000614932 HSPA4LO95757 839 aa10.1□□□□□ -0.79
VPS39-214ENST00000614932 SNAI1O95863 264 aaPredicted RBP10.1□□□□□ -0.79
VPS39-214ENST00000614932 SMPD1P17405 629 aa10.1□□□□□ -0.79
VPS39-214ENST00000614932 TYK2P29597 1187 aa10.1□□□□□ -0.79
VPS39-214ENST00000614932 GBX2P52951 348 aaPredicted RBP10.1□□□□□ -0.79
VPS39-214ENST00000614932 TRAF3Q13114 568 aa10.1□□□□□ -0.79
VPS39-214ENST00000614932 ACOX1Q15067 660 aa10.1□□□□□ -0.79
VPS39-214ENST00000614932 LRRC26Q2I0M4 334 aa10.1□□□□□ -0.79
VPS39-214ENST00000614932 TPRG1LQ5T0D9 272 aa10.1□□□□□ -0.79
VPS39-214ENST00000614932 CMTR2Q8IYT2 770 aaKnown RBP10.1□□□□□ -0.79
VPS39-214ENST00000614932 RCOR2Q8IZ40 523 aa10.1□□□□□ -0.79
VPS39-214ENST00000614932 TMEM199Q8N511 208 aa10.1□□□□□ -0.79
VPS39-214ENST00000614932 KDM1BQ8NB78 822 aa10.1□□□□□ -0.79
VPS39-214ENST00000614932 SMG7Q92540 1137 aaKnown RBP10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms