RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 OR13H1Q8NG92 308 aa24.67■■□□□ 1.54
SHMT1-207ENST00000580002 IER2Q9BTL4 223 aa24.67■■□□□ 1.54
SHMT1-207ENST00000580002 FGF22Q9HCT0 170 aa24.67■■□□□ 1.54
SHMT1-207ENST00000580002 PRMT8Q9NR22 394 aaPredicted RBP24.67■■□□□ 1.54
SHMT1-207ENST00000580002 MOSPD1Q9UJG1 213 aa24.67■■□□□ 1.54
SHMT1-207ENST00000580002 A0A1W2PPC4 97 aa24.67■■□□□ 1.54
SHMT1-207ENST00000580002 NEMP2A6NFY4 417 aa24.67■■□□□ 1.54
SHMT1-207ENST00000580002 G3V2L1 256 aa24.67■■□□□ 1.54
SHMT1-207ENST00000580002 PDHA2P29803 388 aa24.67■■□□□ 1.54
SHMT1-207ENST00000580002 MAGEA9P43362 315 aa24.67■■□□□ 1.54
SHMT1-207ENST00000580002 SERPINB4P48594 390 aa24.67■■□□□ 1.54
SHMT1-207ENST00000580002 CSTF1Q05048 431 aaKnown RBP24.67■■□□□ 1.54
SHMT1-207ENST00000580002 TSNQ15631 228 aaKnown RBP24.67■■□□□ 1.54
SHMT1-207ENST00000580002 USP39Q53GS9 565 aaKnown RBP24.67■■□□□ 1.54
SHMT1-207ENST00000580002 AGAP9Q5VTM2 703 aa24.67■■□□□ 1.54
SHMT1-207ENST00000580002 KYAT3Q6YP21 454 aaKnown RBP24.67■■□□□ 1.54
SHMT1-207ENST00000580002 FAM83HQ6ZRV2 1179 aaPredicted RBP24.67■■□□□ 1.54
SHMT1-207ENST00000580002 Q6ZSR6 202 aa24.67■■□□□ 1.54
SHMT1-207ENST00000580002 NKAPQ8N5F7 415 aaKnown RBP24.67■■□□□ 1.54
SHMT1-207ENST00000580002 SLC6A18Q96N87 628 aa24.67■■□□□ 1.54
SHMT1-207ENST00000580002 ZNHIT2Q9UHR6 403 aa24.67■■□□□ 1.54
SHMT1-207ENST00000580002 EIF2B4Q9UI10 523 aaKnown RBP24.67■■□□□ 1.54
SHMT1-207ENST00000580002 GTF2H3Q13889 308 aa24.66■■□□□ 1.54
SHMT1-207ENST00000580002 C1orf210Q8IVY1 113 aa24.66■■□□□ 1.54
SHMT1-207ENST00000580002 CNPY4Q8N129 248 aa24.66■■□□□ 1.54
SHMT1-207ENST00000580002 ZCCHC2Q9C0B9 1178 aaKnown RBP24.66■■□□□ 1.54
SHMT1-207ENST00000580002 DERL2Q9GZP9 239 aa24.66■■□□□ 1.54
SHMT1-207ENST00000580002 EPHX3Q9H6B9 360 aa24.66■■□□□ 1.54
SHMT1-207ENST00000580002 ADAMTS6Q9UKP5 1117 aa24.66■■□□□ 1.54
SHMT1-207ENST00000580002 PRAMEF26H0Y7S4 382 aa24.65■■□□□ 1.54
SHMT1-207ENST00000580002 LAMTOR5O43504 91 aa24.65■■□□□ 1.54
SHMT1-207ENST00000580002 MAGEC1O60732 1142 aa24.65■■□□□ 1.54
SHMT1-207ENST00000580002 GPR37L1O60883 481 aa24.65■■□□□ 1.54
SHMT1-207ENST00000580002 GPC4O75487 556 aa24.65■■□□□ 1.54
SHMT1-207ENST00000580002 FTH1P02794 183 aa24.65■■□□□ 1.54
SHMT1-207ENST00000580002 ALDH3A1P30838 453 aa24.65■■□□□ 1.54
SHMT1-207ENST00000580002 SLC26A3P40879 764 aa24.65■■□□□ 1.54
SHMT1-207ENST00000580002 NFE2L1Q14494 772 aa24.65■■□□□ 1.54
SHMT1-207ENST00000580002 GBX1Q14549 363 aa24.65■■□□□ 1.54
SHMT1-207ENST00000580002 PCLAFQ15004 111 aa24.65■■□□□ 1.54
SHMT1-207ENST00000580002 ACAP2Q15057 778 aa24.65■■□□□ 1.54
SHMT1-207ENST00000580002 TCEA2Q15560 299 aa24.65■■□□□ 1.54
SHMT1-207ENST00000580002 ENPP7Q6UWV6 458 aa24.65■■□□□ 1.54
SHMT1-207ENST00000580002 ARMCX6Q7L4S7 300 aa24.65■■□□□ 1.54
SHMT1-207ENST00000580002 C10orf107Q8IVU9 208 aa24.65■■□□□ 1.54
SHMT1-207ENST00000580002 CFAP206Q8IYR0 622 aa24.65■■□□□ 1.54
SHMT1-207ENST00000580002 SLC22A18ASQ8N1D0 253 aa24.65■■□□□ 1.54
SHMT1-207ENST00000580002 DLG3Q92796 817 aa24.65■■□□□ 1.54
SHMT1-207ENST00000580002 TSNARE1Q96NA8 513 aa24.65■■□□□ 1.54
SHMT1-207ENST00000580002 SLC17A4Q9Y2C5 497 aa24.65■■□□□ 1.54
SHMT1-207ENST00000580002 DNAJC16Q9Y2G8 782 aa24.65■■□□□ 1.54
SHMT1-207ENST00000580002 HS3ST3A1Q9Y663 406 aa24.65■■□□□ 1.54
SHMT1-207ENST00000580002 CACNB4O00305 520 aaPredicted RBP24.65■■□□□ 1.54
SHMT1-207ENST00000580002 BTN3A1O00481 513 aa24.65■■□□□ 1.54
SHMT1-207ENST00000580002 GRID2O43424 1007 aa24.65■■□□□ 1.54
SHMT1-207ENST00000580002 TSNAXIP1Q2TAA8 658 aa24.65■■□□□ 1.54
SHMT1-207ENST00000580002 OR1E3Q8WZA6 343 aa24.65■■□□□ 1.54
SHMT1-207ENST00000580002 EXT2Q93063 718 aa24.65■■□□□ 1.54
SHMT1-207ENST00000580002 TSACCQ96A04 125 aaPredicted RBP24.65■■□□□ 1.54
SHMT1-207ENST00000580002 HSPA12BQ96MM6 686 aa24.65■■□□□ 1.54
SHMT1-207ENST00000580002 CAPS2Q9BXY5 557 aa24.65■■□□□ 1.54
SHMT1-207ENST00000580002 SUFUQ9UMX1 484 aa24.65■■□□□ 1.54
SHMT1-207ENST00000580002 ST14Q9Y5Y6 855 aa24.65■■□□□ 1.54
SHMT1-207ENST00000580002 KNL1Q8NG31 2342 aa24.64■■□□□ 1.54
SHMT1-207ENST00000580002 SLC5A10A0PJK1 596 aa24.64■■□□□ 1.53
SHMT1-207ENST00000580002 MAP3K13O43283 966 aa24.64■■□□□ 1.53
SHMT1-207ENST00000580002 BPGMP07738 259 aa24.64■■□□□ 1.53
SHMT1-207ENST00000580002 DGKAP23743 735 aa24.64■■□□□ 1.53
SHMT1-207ENST00000580002 GNGT1P63211 74 aa24.64■■□□□ 1.53
SHMT1-207ENST00000580002 CCDC153Q494R4 210 aa24.64■■□□□ 1.53
SHMT1-207ENST00000580002 ABI3BPQ7Z7G0 1075 aa24.64■■□□□ 1.53
SHMT1-207ENST00000580002 DYDC1Q8WWB3 177 aa24.64■■□□□ 1.53
SHMT1-207ENST00000580002 CKAP2Q8WWK9 683 aa24.64■■□□□ 1.53
SHMT1-207ENST00000580002 PDXPQ96GD0 296 aa24.64■■□□□ 1.53
SHMT1-207ENST00000580002 MRPL57Q9BQC6 102 aaKnown RBP24.64■■□□□ 1.53
SHMT1-207ENST00000580002 COPG2Q9UBF2 871 aa24.64■■□□□ 1.53
SHMT1-207ENST00000580002 GPR34Q9UPC5 381 aa24.64■■□□□ 1.53
SHMT1-207ENST00000580002 KRT87PA6NCN2 255 aa24.63■■□□□ 1.53
SHMT1-207ENST00000580002 DLX3O60479 287 aa24.63■■□□□ 1.53
SHMT1-207ENST00000580002 WNT1P04628 370 aa24.63■■□□□ 1.53
SHMT1-207ENST00000580002 CPA3P15088 417 aa24.63■■□□□ 1.53
SHMT1-207ENST00000580002 BGNP21810 368 aa24.63■■□□□ 1.53
SHMT1-207ENST00000580002 HK3P52790 923 aa24.63■■□□□ 1.53
SHMT1-207ENST00000580002 NFATC4Q14934 902 aa24.63■■□□□ 1.53
SHMT1-207ENST00000580002 ZCCHC23Q6ZST2 131 aa24.63■■□□□ 1.53
SHMT1-207ENST00000580002 CHST15Q7LFX5 561 aaPredicted RBP24.63■■□□□ 1.53
SHMT1-207ENST00000580002 LRRTM4Q86VH4 590 aa24.63■■□□□ 1.53
SHMT1-207ENST00000580002 KIAA1191Q96A73 305 aa24.63■■□□□ 1.53
SHMT1-207ENST00000580002 MRPL46Q9H2W6 279 aaKnown RBP24.63■■□□□ 1.53
SHMT1-207ENST00000580002 CYP4F12Q9HCS2 524 aa24.63■■□□□ 1.53
SHMT1-207ENST00000580002 HOXA6P31267 233 aa24.62■■□□□ 1.53
SHMT1-207ENST00000580002 KIAA1024LP59773 190 aa24.62■■□□□ 1.53
SHMT1-207ENST00000580002 ARHGAP8P85298 464 aa24.62■■□□□ 1.53
SHMT1-207ENST00000580002 FBXO48Q5FWF7 155 aa24.62■■□□□ 1.53
SHMT1-207ENST00000580002 RD3Q7Z3Z2 195 aa24.62■■□□□ 1.53
SHMT1-207ENST00000580002 CCDC91Q7Z6B0 441 aa24.62■■□□□ 1.53
SHMT1-207ENST00000580002 DTWD2Q8NBA8 298 aa24.62■■□□□ 1.53
SHMT1-207ENST00000580002 CADM4Q8NFZ8 388 aa24.62■■□□□ 1.53
SHMT1-207ENST00000580002 PDLIM5Q96HC4 596 aaKnown RBP24.62■■□□□ 1.53
SHMT1-207ENST00000580002 SPACA7Q96KW9 195 aa24.62■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms