RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 CDC7O00311 574 aa13.45□□□□□ -0.26
CCDC40-209ENST00000573474 BTN3A1O00481 513 aa13.45□□□□□ -0.26
CCDC40-209ENST00000573474 TOR1BO14657 336 aa13.45□□□□□ -0.26
CCDC40-209ENST00000573474 CHUKO15111 745 aa13.45□□□□□ -0.26
CCDC40-209ENST00000573474 NUAK1O60285 661 aa13.45□□□□□ -0.26
CCDC40-209ENST00000573474 DLX3O60479 287 aa13.45□□□□□ -0.26
CCDC40-209ENST00000573474 TRIM13O60858 407 aa13.45□□□□□ -0.26
CCDC40-209ENST00000573474 KERAO60938 352 aa13.45□□□□□ -0.26
CCDC40-209ENST00000573474 SMIM24O75264 130 aa13.45□□□□□ -0.26
CCDC40-209ENST00000573474 H2AFYO75367 372 aaKnown RBP13.45□□□□□ -0.26
CCDC40-209ENST00000573474 GPC4O75487 556 aa13.45□□□□□ -0.26
CCDC40-209ENST00000573474 FSBPO95073 299 aa13.45□□□□□ -0.26
CCDC40-209ENST00000573474 TPBGLP0DKB5 382 aa13.45□□□□□ -0.26
CCDC40-209ENST00000573474 MPC1LP0DKB6 136 aa13.45□□□□□ -0.26
CCDC40-209ENST00000573474 KCNC1P48547 511 aa13.45□□□□□ -0.26
CCDC40-209ENST00000573474 SEC24CP53992 1094 aa13.45□□□□□ -0.26
CCDC40-209ENST00000573474 GABPB1Q06547 395 aaPredicted RBP13.45□□□□□ -0.26
CCDC40-209ENST00000573474 HSPA14Q0VDF9 509 aa13.45□□□□□ -0.26
CCDC40-209ENST00000573474 ASPHQ12797 758 aa13.45□□□□□ -0.26
CCDC40-209ENST00000573474 OR4D1Q15615 310 aa13.45□□□□□ -0.26
CCDC40-209ENST00000573474 TSNQ15631 228 aaKnown RBP13.45□□□□□ -0.26
CCDC40-209ENST00000573474 CHI3L2Q15782 390 aa13.45□□□□□ -0.26
CCDC40-209ENST00000573474 TJAP1Q5JTD0 557 aa13.45□□□□□ -0.26
CCDC40-209ENST00000573474 DOK6Q6PKX4 331 aa13.45□□□□□ -0.26
CCDC40-209ENST00000573474 NAPRTQ6XQN6 538 aa13.45□□□□□ -0.26
CCDC40-209ENST00000573474 PIWIL4Q7Z3Z4 852 aaKnown RBP13.45□□□□□ -0.26
CCDC40-209ENST00000573474 TRAPPC5Q8IUR0 188 aa13.45□□□□□ -0.26
CCDC40-209ENST00000573474 LRRC34Q8IZ02 419 aa13.45□□□□□ -0.26
CCDC40-209ENST00000573474 RLN3Q8WXF3 142 aa13.45□□□□□ -0.26
CCDC40-209ENST00000573474 FOXJ1Q92949 421 aa13.45□□□□□ -0.26
CCDC40-209ENST00000573474 ATOH8Q96SQ7 321 aa13.45□□□□□ -0.26
CCDC40-209ENST00000573474 PCED1AQ9H1Q7 454 aa13.45□□□□□ -0.26
CCDC40-209ENST00000573474 RMI1Q9H9A7 625 aa13.45□□□□□ -0.26
CCDC40-209ENST00000573474 DLGAP2Q9P1A6 1054 aa13.45□□□□□ -0.26
CCDC40-209ENST00000573474 IKZF3Q9UKT9 509 aa13.45□□□□□ -0.26
CCDC40-209ENST00000573474 RNF112Q9ULX5 631 aa13.45□□□□□ -0.26
CCDC40-209ENST00000573474 DMTF1Q9Y222 760 aa13.45□□□□□ -0.26
CCDC40-209ENST00000573474 SLC5A10A0PJK1 596 aa13.44□□□□□ -0.26
CCDC40-209ENST00000573474 PRAMEF26H0Y7S4 382 aa13.44□□□□□ -0.26
CCDC40-209ENST00000573474 K7ESF4 209 aa13.44□□□□□ -0.26
CCDC40-209ENST00000573474 LIN7AO14910 233 aaPredicted RBP13.44□□□□□ -0.26
CCDC40-209ENST00000573474 KMOO15229 486 aa13.44□□□□□ -0.26
CCDC40-209ENST00000573474 DCXO43602 365 aa13.44□□□□□ -0.26
CCDC40-209ENST00000573474 NDUFS2O75306 463 aa13.44□□□□□ -0.26
CCDC40-209ENST00000573474 POP7O75817 140 aaKnown RBP13.44□□□□□ -0.26
CCDC40-209ENST00000573474 SLCO2B1O94956 709 aa13.44□□□□□ -0.26
CCDC40-209ENST00000573474 SERPINE1P05121 402 aa13.44□□□□□ -0.26
CCDC40-209ENST00000573474 IGHV4-34P06331 123 aa13.44□□□□□ -0.26
CCDC40-209ENST00000573474 FGF3P11487 239 aaPredicted RBP13.44□□□□□ -0.26
CCDC40-209ENST00000573474 GRK2P25098 689 aa13.44□□□□□ -0.26
CCDC40-209ENST00000573474 PXNP49023 591 aaPredicted RBP13.44□□□□□ -0.26
CCDC40-209ENST00000573474 KIAA1024LP59773 190 aa13.44□□□□□ -0.26
CCDC40-209ENST00000573474 DNAJB13P59910 316 aa13.44□□□□□ -0.26
CCDC40-209ENST00000573474 PLOD1Q02809 727 aaPredicted RBP13.44□□□□□ -0.26
CCDC40-209ENST00000573474 STX3Q13277 289 aa13.44□□□□□ -0.26
CCDC40-209ENST00000573474 BOP1Q14137 746 aaKnown RBP13.44□□□□□ -0.26
CCDC40-209ENST00000573474 NUMA1Q14980 2115 aa13.44□□□□□ -0.26
CCDC40-209ENST00000573474 ZNF658BQ4V348 819 aaPredicted RBP13.44□□□□□ -0.26
CCDC40-209ENST00000573474 SYTL3Q4VX76 610 aa13.44□□□□□ -0.26
CCDC40-209ENST00000573474 LIPMQ5VYY2 423 aa13.44□□□□□ -0.26
CCDC40-209ENST00000573474 CWF19L1Q69YN2 538 aaKnown RBP13.44□□□□□ -0.26
CCDC40-209ENST00000573474 NEK10Q6ZWH5 1172 aa13.44□□□□□ -0.26
CCDC40-209ENST00000573474 ADAMTSL2Q86TH1 951 aa13.44□□□□□ -0.26
CCDC40-209ENST00000573474 LRRTM4Q86VH4 590 aa13.44□□□□□ -0.26
CCDC40-209ENST00000573474 GPSM1Q86YR5 675 aa13.44□□□□□ -0.26
CCDC40-209ENST00000573474 SLC22A9Q8IVM8 553 aa13.44□□□□□ -0.26
CCDC40-209ENST00000573474 ZNF547Q8IVP9 402 aa13.44□□□□□ -0.26
CCDC40-209ENST00000573474 MYOCQ99972 504 aa13.44□□□□□ -0.26
CCDC40-209ENST00000573474 TMCO1Q9UM00 188 aa13.44□□□□□ -0.26
CCDC40-209ENST00000573474 CDYLQ9Y232 598 aa13.44□□□□□ -0.26
CCDC40-209ENST00000573474 SLC17A4Q9Y2C5 497 aa13.44□□□□□ -0.26
CCDC40-209ENST00000573474 KLHL33A6NCF5 533 aa13.43□□□□□ -0.26
CCDC40-209ENST00000573474 POM121BA6NF01 834 aa13.43□□□□□ -0.26
CCDC40-209ENST00000573474 MGAT4DA6NG13 374 aa13.43□□□□□ -0.26
CCDC40-209ENST00000573474 TMEM202A6NGA9 273 aa13.43□□□□□ -0.26
CCDC40-209ENST00000573474 A8MT66 165 aa13.43□□□□□ -0.26
CCDC40-209ENST00000573474 AXIN1O15169 862 aa13.43□□□□□ -0.26
CCDC40-209ENST00000573474 GRID2O43424 1007 aa13.43□□□□□ -0.26
CCDC40-209ENST00000573474 PI15O43692 258 aa13.43□□□□□ -0.26
CCDC40-209ENST00000573474 IPO13O94829 963 aaKnown RBP13.43□□□□□ -0.26
CCDC40-209ENST00000573474 PDGFBP01127 241 aaPredicted RBP13.43□□□□□ -0.26
CCDC40-209ENST00000573474 CEACAM5P06731 702 aa13.43□□□□□ -0.26
CCDC40-209ENST00000573474 AOC1P19801 751 aa13.43□□□□□ -0.26
CCDC40-209ENST00000573474 DRD4P21917 467 aa13.43□□□□□ -0.26
CCDC40-209ENST00000573474 KELP23276 732 aa13.43□□□□□ -0.26
CCDC40-209ENST00000573474 PBLDP30039 288 aaPredicted RBP13.43□□□□□ -0.26
CCDC40-209ENST00000573474 HOXA6P31267 233 aa13.43□□□□□ -0.26
CCDC40-209ENST00000573474 CLDN2P57739 230 aa13.43□□□□□ -0.26
CCDC40-209ENST00000573474 PFN3P60673 137 aa13.43□□□□□ -0.26
CCDC40-209ENST00000573474 YPEL5P62699 121 aa13.43□□□□□ -0.26
CCDC40-209ENST00000573474 ARHGAP8P85298 464 aa13.43□□□□□ -0.26
CCDC40-209ENST00000573474 NFKB2Q00653 900 aa13.43□□□□□ -0.26
CCDC40-209ENST00000573474 NFATC4Q14934 902 aa13.43□□□□□ -0.26
CCDC40-209ENST00000573474 TERF2Q15554 542 aa13.43□□□□□ -0.26
CCDC40-209ENST00000573474 USP39Q53GS9 565 aaKnown RBP13.43□□□□□ -0.26
CCDC40-209ENST00000573474 CRTC3Q6UUV7 619 aa13.43□□□□□ -0.26
CCDC40-209ENST00000573474 CPLX4Q7Z7G2 160 aa13.43□□□□□ -0.26
CCDC40-209ENST00000573474 FAM160A2Q8N612 972 aaPredicted RBP13.43□□□□□ -0.26
CCDC40-209ENST00000573474 FRMD1Q8N878 549 aa13.43□□□□□ -0.26
CCDC40-209ENST00000573474 TMEM145Q8NBT3 493 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms