RNA–Protein interactions for RNA: ENST00000569916.1

CNOT1-220, Transcript of CCR4-NOT transcription complex subunit 1, humanhuman

TSL 3

Gene CNOT1, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1-220ENST00000569916 RBM12BQ8IXT5 1001 aaKnown RBP12.77□□□□□ -0.37
CNOT1-220ENST00000569916 NCSTNQ92542 709 aa12.77□□□□□ -0.37
CNOT1-220ENST00000569916 MS4A14Q96JA4 679 aa12.77□□□□□ -0.37
CNOT1-220ENST00000569916 ZNF778Q96MU6 729 aa12.77□□□□□ -0.37
CNOT1-220ENST00000569916 HOMER3Q9NSC5 361 aa12.77□□□□□ -0.37
CNOT1-220ENST00000569916 AKAP7Q9P0M2 348 aaPredicted RBP12.77□□□□□ -0.37
CNOT1-220ENST00000569916 SLC2A6Q9UGQ3 507 aa12.77□□□□□ -0.37
CNOT1-220ENST00000569916 ACSL6Q9UKU0 697 aa12.77□□□□□ -0.37
CNOT1-220ENST00000569916 RIMKLBQ9ULI2 386 aa12.77□□□□□ -0.37
CNOT1-220ENST00000569916 SDK2Q58EX2 2172 aa12.76□□□□□ -0.37
CNOT1-220ENST00000569916 CCDC162PA2VCL2 907 aa12.76□□□□□ -0.37
CNOT1-220ENST00000569916 C9orf172C9J069 976 aa12.76□□□□□ -0.37
CNOT1-220ENST00000569916 KLK10O43240 276 aa12.76□□□□□ -0.37
CNOT1-220ENST00000569916 PRAMEF10O60809 474 aa12.76□□□□□ -0.37
CNOT1-220ENST00000569916 UBXN7O94888 489 aa12.76□□□□□ -0.37
CNOT1-220ENST00000569916 C9P02748 559 aa12.76□□□□□ -0.37
CNOT1-220ENST00000569916 FGF3P11487 239 aaPredicted RBP12.76□□□□□ -0.37
CNOT1-220ENST00000569916 ADRA1DP25100 572 aa12.76□□□□□ -0.37
CNOT1-220ENST00000569916 GFERP55789 205 aa12.76□□□□□ -0.37
CNOT1-220ENST00000569916 LAMB3Q13751 1172 aa12.76□□□□□ -0.37
CNOT1-220ENST00000569916 RPE65Q16518 533 aa12.76□□□□□ -0.37
CNOT1-220ENST00000569916 ZNF658BQ4V348 819 aaPredicted RBP12.76□□□□□ -0.37
CNOT1-220ENST00000569916 ZNF534Q76KX8 674 aa12.76□□□□□ -0.37
CNOT1-220ENST00000569916 TAS2R42Q7RTR8 314 aa12.76□□□□□ -0.37
CNOT1-220ENST00000569916 ARHGAP22Q7Z5H3 698 aa12.76□□□□□ -0.37
CNOT1-220ENST00000569916 LILRA3Q8N6C8 439 aaPredicted RBP12.76□□□□□ -0.37
CNOT1-220ENST00000569916 AGBL5Q8NDL9 886 aa12.76□□□□□ -0.37
CNOT1-220ENST00000569916 HM13Q8TCT9 377 aa12.76□□□□□ -0.37
CNOT1-220ENST00000569916 COG1Q8WTW3 980 aa12.76□□□□□ -0.37
CNOT1-220ENST00000569916 RSC1A1Q92681 617 aa12.76□□□□□ -0.37
CNOT1-220ENST00000569916 USP7Q93009 1102 aa12.76□□□□□ -0.37
CNOT1-220ENST00000569916 PMEPA1Q969W9 287 aa12.76□□□□□ -0.37
CNOT1-220ENST00000569916 RMDN2Q96LZ7 410 aa12.76□□□□□ -0.37
CNOT1-220ENST00000569916 OSBPL9Q96SU4 736 aa12.76□□□□□ -0.37
CNOT1-220ENST00000569916 DPH1Q9BZG8 443 aa12.76□□□□□ -0.37
CNOT1-220ENST00000569916 WWP1Q9H0M0 922 aa12.76□□□□□ -0.37
CNOT1-220ENST00000569916 TRMT1Q9NXH9 659 aaKnown RBP12.76□□□□□ -0.37
CNOT1-220ENST00000569916 SMARCAL1Q9NZC9 954 aa12.76□□□□□ -0.37
CNOT1-220ENST00000569916 FOXJ2Q9P0K8 574 aa12.76□□□□□ -0.37
CNOT1-220ENST00000569916 FAM8A1Q9UBU6 413 aa12.76□□□□□ -0.37
CNOT1-220ENST00000569916 ACSL5Q9ULC5 683 aa12.76□□□□□ -0.37
CNOT1-220ENST00000569916 TTC7AQ9ULT0 858 aaPredicted RBP12.76□□□□□ -0.37
CNOT1-220ENST00000569916 SSUH2Q9Y2M2 353 aa12.76□□□□□ -0.37
CNOT1-220ENST00000569916 TCAF1Q9Y4C2 921 aa12.76□□□□□ -0.37
CNOT1-220ENST00000569916 C17orf113A0A1B0GUU1 675 aa12.75□□□□□ -0.37
CNOT1-220ENST00000569916 USP27XA6NNY8 438 aa12.75□□□□□ -0.37
CNOT1-220ENST00000569916 PGRMC1O00264 195 aaKnown RBP12.75□□□□□ -0.37
CNOT1-220ENST00000569916 GOT2P00505 430 aaKnown RBP12.75□□□□□ -0.37
CNOT1-220ENST00000569916 MTHFD1P11586 935 aaKnown RBP12.75□□□□□ -0.37
CNOT1-220ENST00000569916 TYRP1P17643 537 aa12.75□□□□□ -0.37
CNOT1-220ENST00000569916 CSTF2P33240 577 aaKnown RBP eCLIP12.75□□□□□ -0.37
CNOT1-220ENST00000569916 CAPZBP47756 277 aa12.75□□□□□ -0.37
CNOT1-220ENST00000569916 CLN3Q13286 438 aa12.75□□□□□ -0.37
CNOT1-220ENST00000569916 ITIH4Q14624 930 aa12.75□□□□□ -0.37
CNOT1-220ENST00000569916 TRIP13Q15645 432 aaPredicted RBP12.75□□□□□ -0.37
CNOT1-220ENST00000569916 CYP1B1Q16678 543 aa12.75□□□□□ -0.37
CNOT1-220ENST00000569916 SNAP47Q5SQN1 464 aa12.75□□□□□ -0.37
CNOT1-220ENST00000569916 DUS1LQ6P1R4 473 aaKnown RBP12.75□□□□□ -0.37
CNOT1-220ENST00000569916 AFTPHQ6ULP2 937 aa12.75□□□□□ -0.37
CNOT1-220ENST00000569916 PACS1Q6VY07 963 aa12.75□□□□□ -0.37
CNOT1-220ENST00000569916 NLRP9Q7RTR0 991 aa12.75□□□□□ -0.37
CNOT1-220ENST00000569916 PLXDC1Q8IUK5 500 aa12.75□□□□□ -0.37
CNOT1-220ENST00000569916 CLDN19Q8N6F1 224 aa12.75□□□□□ -0.37
CNOT1-220ENST00000569916 BMPERQ8N8U9 685 aa12.75□□□□□ -0.37
CNOT1-220ENST00000569916 SPDYE1Q8NFV5 336 aaPredicted RBP12.75□□□□□ -0.37
CNOT1-220ENST00000569916 ANP32BQ92688 251 aaKnown RBP12.75□□□□□ -0.37
CNOT1-220ENST00000569916 PEX13Q92968 403 aa12.75□□□□□ -0.37
CNOT1-220ENST00000569916 HDAC10Q969S8 669 aa12.75□□□□□ -0.37
CNOT1-220ENST00000569916 C12orf66Q96MD2 445 aa12.75□□□□□ -0.37
CNOT1-220ENST00000569916 INSM2Q96T92 566 aaPredicted RBP12.75□□□□□ -0.37
CNOT1-220ENST00000569916 AP1M1Q9BXS5 423 aa12.75□□□□□ -0.37
CNOT1-220ENST00000569916 B3GNT4Q9C0J1 378 aa12.75□□□□□ -0.37
CNOT1-220ENST00000569916 PRORYQ9H606 182 aa12.75□□□□□ -0.37
CNOT1-220ENST00000569916 IMP3Q9NV31 184 aaKnown RBP12.75□□□□□ -0.37
CNOT1-220ENST00000569916 OCIAD1Q9NX40 245 aa12.75□□□□□ -0.37
CNOT1-220ENST00000569916 KLHL3Q9UH77 587 aa12.75□□□□□ -0.37
CNOT1-220ENST00000569916 CFAP20Q9Y6A4 193 aaKnown RBP12.75□□□□□ -0.37
CNOT1-220ENST00000569916 FAM208BQ5VWN6 2430 aa12.74□□□□□ -0.37
CNOT1-220ENST00000569916 PTPRQQ9UMZ3 2332 aa12.74□□□□□ -0.37
CNOT1-220ENST00000569916 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.74□□□□□ -0.37
CNOT1-220ENST00000569916 TCRBV7S3A2A0A539 114 aa12.74□□□□□ -0.37
CNOT1-220ENST00000569916 EFCAB7A8K855 629 aa12.74□□□□□ -0.37
CNOT1-220ENST00000569916 A8MU76 341 aa12.74□□□□□ -0.37
CNOT1-220ENST00000569916 B4E171 279 aa12.74□□□□□ -0.37
CNOT1-220ENST00000569916 KIF5CO60282 957 aa12.74□□□□□ -0.37
CNOT1-220ENST00000569916 POLBP06746 335 aa12.74□□□□□ -0.37
CNOT1-220ENST00000569916 ANKRD34CP0C6C1 535 aa12.74□□□□□ -0.37
CNOT1-220ENST00000569916 SLC35G4P0C7Q5 338 aa12.74□□□□□ -0.37
CNOT1-220ENST00000569916 AMD1P17707 334 aa12.74□□□□□ -0.37
CNOT1-220ENST00000569916 TPSB2P20231 275 aa12.74□□□□□ -0.37
CNOT1-220ENST00000569916 TSPAN7P41732 249 aa12.74□□□□□ -0.37
CNOT1-220ENST00000569916 NSG1P42857 185 aa12.74□□□□□ -0.37
CNOT1-220ENST00000569916 LEPRP48357 1165 aaKnown RBP12.74□□□□□ -0.37
CNOT1-220ENST00000569916 SESN2P58004 480 aaPredicted RBP12.74□□□□□ -0.37
CNOT1-220ENST00000569916 TPSAB1Q15661 275 aa12.74□□□□□ -0.37
CNOT1-220ENST00000569916 PCID2Q5JVF3 399 aa12.74□□□□□ -0.37
CNOT1-220ENST00000569916 CAPRIN2Q6IMN6 1127 aaKnown RBP12.74□□□□□ -0.37
CNOT1-220ENST00000569916 CFAP206Q8IYR0 622 aa12.74□□□□□ -0.37
CNOT1-220ENST00000569916 PPHLN1Q8NEY8 458 aaKnown RBP12.74□□□□□ -0.37
CNOT1-220ENST00000569916 ACTRT1Q8TDG2 376 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms