RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 H3BQ06 376 aaPredicted RBP3.9□□□□□ -1.79
VPS13C-208ENST00000559119 IPO7O95373 1038 aaKnown RBP3.9□□□□□ -1.79
VPS13C-208ENST00000559119 HARS2P49590 506 aaKnown RBP3.9□□□□□ -1.79
VPS13C-208ENST00000559119 RPS18P62269 152 aaKnown RBP3.9□□□□□ -1.79
VPS13C-208ENST00000559119 OLR1P78380 273 aa3.9□□□□□ -1.79
VPS13C-208ENST00000559119 INO80CQ6PI98 192 aaPredicted RBP3.9□□□□□ -1.79
VPS13C-208ENST00000559119 CNTROBQ8N137 903 aa3.9□□□□□ -1.79
VPS13C-208ENST00000559119 ZNF843Q8N446 348 aa3.9□□□□□ -1.79
VPS13C-208ENST00000559119 ZNF383Q8NA42 475 aa3.9□□□□□ -1.79
VPS13C-208ENST00000559119 ST8SIA4Q92187 359 aa3.9□□□□□ -1.79
VPS13C-208ENST00000559119 MAP7D2Q96T17 732 aa3.9□□□□□ -1.79
VPS13C-208ENST00000559119 SEPT5Q99719 369 aaPredicted RBP3.9□□□□□ -1.79
VPS13C-208ENST00000559119 PIP5K1AQ99755 562 aa3.9□□□□□ -1.79
VPS13C-208ENST00000559119 GGA3Q9NZ52 723 aa3.9□□□□□ -1.79
VPS13C-208ENST00000559119 KLK13Q9UKR3 277 aa3.9□□□□□ -1.79
VPS13C-208ENST00000559119 KDM3AQ9Y4C1 1321 aa3.9□□□□□ -1.79
VPS13C-208ENST00000559119 IGLV9-49A0A0B4J1Y8 123 aa3.89□□□□□ -1.79
VPS13C-208ENST00000559119 PALM2-AKAP2B1ALY0 433 aaPredicted RBP3.89□□□□□ -1.79
VPS13C-208ENST00000559119 PI15O43692 258 aa3.89□□□□□ -1.79
VPS13C-208ENST00000559119 ZNF217O75362 1048 aa3.89□□□□□ -1.79
VPS13C-208ENST00000559119 CDC123O75794 336 aaPredicted RBP3.89□□□□□ -1.79
VPS13C-208ENST00000559119 DUS4LO95620 317 aaKnown RBP3.89□□□□□ -1.79
VPS13C-208ENST00000559119 CBLP22681 906 aa3.89□□□□□ -1.79
VPS13C-208ENST00000559119 EPHA8P29322 1005 aaPredicted RBP3.89□□□□□ -1.79
VPS13C-208ENST00000559119 LRMPQ12912 555 aa3.89□□□□□ -1.79
VPS13C-208ENST00000559119 MVPQ14764 893 aaKnown RBP3.89□□□□□ -1.79
VPS13C-208ENST00000559119 NAB2Q15742 525 aa3.89□□□□□ -1.79
VPS13C-208ENST00000559119 SGSM1Q2NKQ1 1148 aa3.89□□□□□ -1.79
VPS13C-208ENST00000559119 FASTKD1Q53R41 847 aaKnown RBP3.89□□□□□ -1.79
VPS13C-208ENST00000559119 LRIF1Q5T3J3 769 aa3.89□□□□□ -1.79
VPS13C-208ENST00000559119 DENND5BQ6ZUT9 1274 aa3.89□□□□□ -1.79
VPS13C-208ENST00000559119 ARMC8Q8IUR7 673 aa3.89□□□□□ -1.79
VPS13C-208ENST00000559119 CRYBG2Q8N1P7 616 aa3.89□□□□□ -1.79
VPS13C-208ENST00000559119 GSDMBQ8TAX9 411 aa3.89□□□□□ -1.79
VPS13C-208ENST00000559119 SGCDQ92629 289 aa3.89□□□□□ -1.79
VPS13C-208ENST00000559119 INTS12Q96CB8 462 aaKnown RBP3.89□□□□□ -1.79
VPS13C-208ENST00000559119 FOXN4Q96NZ1 517 aa3.89□□□□□ -1.79
VPS13C-208ENST00000559119 SCPEP1Q9HB40 452 aa3.89□□□□□ -1.79
VPS13C-208ENST00000559119 PRR34Q9NV39 138 aa3.89□□□□□ -1.79
VPS13C-208ENST00000559119 MIOSQ9NXC5 875 aa3.89□□□□□ -1.79
VPS13C-208ENST00000559119 MTMR10Q9NXD2 777 aa3.89□□□□□ -1.79
VPS13C-208ENST00000559119 FLRT3Q9NZU0 649 aa3.89□□□□□ -1.79
VPS13C-208ENST00000559119 NAALADL1Q9UQQ1 740 aa3.89□□□□□ -1.79
VPS13C-208ENST00000559119 TMEM189-UBE2V1I3L0A0 370 aa3.88□□□□□ -1.79
VPS13C-208ENST00000559119 J3QR06 171 aa3.88□□□□□ -1.79
VPS13C-208ENST00000559119 DNM1LO00429 736 aa3.88□□□□□ -1.79
VPS13C-208ENST00000559119 GCNT3O95395 438 aa3.88□□□□□ -1.79
VPS13C-208ENST00000559119 H1F0P07305 194 aaKnown RBP3.88□□□□□ -1.79
VPS13C-208ENST00000559119 CCT5P48643 541 aa3.88□□□□□ -1.79
VPS13C-208ENST00000559119 RPL7AP62424 266 aaKnown RBP3.88□□□□□ -1.79
VPS13C-208ENST00000559119 TFAP4Q01664 338 aa3.88□□□□□ -1.79
VPS13C-208ENST00000559119 CDR2Q01850 454 aa3.88□□□□□ -1.79
VPS13C-208ENST00000559119 TMEM115Q12893 351 aaPredicted RBP3.88□□□□□ -1.79
VPS13C-208ENST00000559119 CSTF3Q12996 717 aaKnown RBP3.88□□□□□ -1.79
VPS13C-208ENST00000559119 GPR17Q13304 367 aa3.88□□□□□ -1.79
VPS13C-208ENST00000559119 UBE2V1Q13404 147 aa3.88□□□□□ -1.79
VPS13C-208ENST00000559119 P2RY6Q15077 328 aa3.88□□□□□ -1.79
VPS13C-208ENST00000559119 CYP4A22Q5TCH4 519 aa3.88□□□□□ -1.79
VPS13C-208ENST00000559119 ZDHHC20Q5W0Z9 365 aa3.88□□□□□ -1.79
VPS13C-208ENST00000559119 PAQR6Q6TCH4 344 aa3.88□□□□□ -1.79
VPS13C-208ENST00000559119 RNF168Q8IYW5 571 aaPredicted RBP3.88□□□□□ -1.79
VPS13C-208ENST00000559119 L3MBTL4Q8NA19 623 aa3.88□□□□□ -1.79
VPS13C-208ENST00000559119 SUSD6Q92537 303 aa3.88□□□□□ -1.79
VPS13C-208ENST00000559119 ZNF414Q96IQ9 312 aa3.88□□□□□ -1.79
VPS13C-208ENST00000559119 NSL1Q96IY1 281 aa3.88□□□□□ -1.79
VPS13C-208ENST00000559119 SCLT1Q96NL6 688 aa3.88□□□□□ -1.79
VPS13C-208ENST00000559119 GFI1Q99684 422 aa3.88□□□□□ -1.79
VPS13C-208ENST00000559119 DENND2DQ9H6A0 471 aaPredicted RBP3.88□□□□□ -1.79
VPS13C-208ENST00000559119 TAS2R10Q9NYW0 307 aa3.88□□□□□ -1.79
VPS13C-208ENST00000559119 LRWD1Q9UFC0 647 aa3.88□□□□□ -1.79
VPS13C-208ENST00000559119 LIMA1Q9UHB6 759 aaKnown RBP3.88□□□□□ -1.79
VPS13C-208ENST00000559119 DBNLQ9UJU6 430 aaKnown RBP3.88□□□□□ -1.79
VPS13C-208ENST00000559119 ARHGAP26Q9UNA1 814 aa3.88□□□□□ -1.79
VPS13C-208ENST00000559119 ADAMTS9Q9P2N4 1935 aa3.87□□□□□ -1.79
VPS13C-208ENST00000559119 NDUFS3O75489 264 aa3.87□□□□□ -1.79
VPS13C-208ENST00000559119 DNAH10OSP0CZ25 163 aa3.87□□□□□ -1.79
VPS13C-208ENST00000559119 XBP1P17861 261 aa3.87□□□□□ -1.79
VPS13C-208ENST00000559119 GRAPQ13588 217 aa3.87□□□□□ -1.79
VPS13C-208ENST00000559119 PEX6Q13608 980 aa3.87□□□□□ -1.79
VPS13C-208ENST00000559119 SOWAHCQ53LP3 525 aaPredicted RBP3.87□□□□□ -1.79
VPS13C-208ENST00000559119 KLC3Q6P597 504 aa3.87□□□□□ -1.79
VPS13C-208ENST00000559119 PSRC1Q6PGN9 363 aaPredicted RBP3.87□□□□□ -1.79
VPS13C-208ENST00000559119 TPRG1Q6ZUI0 275 aa3.87□□□□□ -1.79
VPS13C-208ENST00000559119 ZNF534Q76KX8 674 aa3.87□□□□□ -1.79
VPS13C-208ENST00000559119 LRRTM1Q86UE6 522 aa3.87□□□□□ -1.79
VPS13C-208ENST00000559119 RAB42Q8N4Z0 105 aa3.87□□□□□ -1.79
VPS13C-208ENST00000559119 OMA1Q96E52 524 aa3.87□□□□□ -1.79
VPS13C-208ENST00000559119 GPATCH1Q9BRR8 931 aaKnown RBP3.87□□□□□ -1.79
VPS13C-208ENST00000559119 CLEC7AQ9BXN2 247 aa3.87□□□□□ -1.79
VPS13C-208ENST00000559119 RRN3Q9NYV6 651 aa3.87□□□□□ -1.79
VPS13C-208ENST00000559119 DGKBQ9Y6T7 804 aa3.87□□□□□ -1.79
VPS13C-208ENST00000559119 RRN3P2A6NIE6 340 aa3.86□□□□□ -1.79
VPS13C-208ENST00000559119 SMAD9O15198 467 aaKnown RBP3.86□□□□□ -1.79
VPS13C-208ENST00000559119 TMCC2O75069 709 aa3.86□□□□□ -1.79
VPS13C-208ENST00000559119 PSMC4P43686 418 aa3.86□□□□□ -1.79
VPS13C-208ENST00000559119 MS4A2Q01362 244 aa3.86□□□□□ -1.79
VPS13C-208ENST00000559119 CEBPZQ03701 1054 aaKnown RBP3.86□□□□□ -1.79
VPS13C-208ENST00000559119 GOLGA8DPQ0D2H9 430 aa3.86□□□□□ -1.79
VPS13C-208ENST00000559119 RAPSNQ13702 412 aa3.86□□□□□ -1.79
VPS13C-208ENST00000559119 MEP1AQ16819 746 aa3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 88.6 ms