RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 STAG3L4Q8TBR4 150 aa11.19□□□□□ -0.62
LDLR-208ENST00000558518 TPD52L3Q96J77 140 aa11.19□□□□□ -0.62
LDLR-208ENST00000558518 SLC2A13Q96QE2 648 aa11.19□□□□□ -0.62
LDLR-208ENST00000558518 BEX2Q9BXY8 128 aa11.19□□□□□ -0.62
LDLR-208ENST00000558518 TRIM54Q9BYV2 358 aa11.19□□□□□ -0.62
LDLR-208ENST00000558518 PRKD2Q9BZL6 878 aa11.19□□□□□ -0.62
LDLR-208ENST00000558518 NTN4Q9HB63 628 aa11.19□□□□□ -0.62
LDLR-208ENST00000558518 CNGB3Q9NQW8 809 aa11.19□□□□□ -0.62
LDLR-208ENST00000558518 TREX1Q9NSU2 369 aa11.19□□□□□ -0.62
LDLR-208ENST00000558518 C14orf119Q9NWQ9 140 aa11.19□□□□□ -0.62
LDLR-208ENST00000558518 VAPAQ9P0L0 249 aa11.19□□□□□ -0.62
LDLR-208ENST00000558518 PCDHGA3Q9Y5H0 932 aa11.19□□□□□ -0.62
LDLR-208ENST00000558518 LAMA2P24043 3122 aaKnown RBP11.19□□□□□ -0.62
LDLR-208ENST00000558518 E9PAM4 449 aa11.19□□□□□ -0.62
LDLR-208ENST00000558518 SEC14L2O76054 403 aa11.19□□□□□ -0.62
LDLR-208ENST00000558518 SERPINA1P01009 418 aa11.19□□□□□ -0.62
LDLR-208ENST00000558518 ALPLP05186 524 aa11.19□□□□□ -0.62
LDLR-208ENST00000558518 RAP2AP10114 183 aa11.19□□□□□ -0.62
LDLR-208ENST00000558518 GP2P55259 537 aaKnown RBP11.19□□□□□ -0.62
LDLR-208ENST00000558518 DDR2Q16832 855 aa11.19□□□□□ -0.62
LDLR-208ENST00000558518 C6orf136Q5SQH8 315 aa11.19□□□□□ -0.62
LDLR-208ENST00000558518 RANBP10Q6VN20 620 aa11.19□□□□□ -0.62
LDLR-208ENST00000558518 GPRIN3Q6ZVF9 776 aa11.19□□□□□ -0.62
LDLR-208ENST00000558518 ARMCX6Q7L4S7 300 aa11.19□□□□□ -0.62
LDLR-208ENST00000558518 TMEM199Q8N511 208 aa11.19□□□□□ -0.62
LDLR-208ENST00000558518 FAM83FQ8NEG4 500 aaPredicted RBP11.19□□□□□ -0.62
LDLR-208ENST00000558518 LINGO1Q96FE5 620 aa11.19□□□□□ -0.62
LDLR-208ENST00000558518 ZBTB18Q99592 522 aa11.19□□□□□ -0.62
LDLR-208ENST00000558518 CGREF1Q99674 301 aa11.19□□□□□ -0.62
LDLR-208ENST00000558518 TRMOQ9BU70 441 aa11.19□□□□□ -0.62
LDLR-208ENST00000558518 WDR12Q9GZL7 423 aaKnown RBP11.19□□□□□ -0.62
LDLR-208ENST00000558518 RNF167Q9H6Y7 350 aa11.19□□□□□ -0.62
LDLR-208ENST00000558518 ZBTB20Q9HC78 741 aaPredicted RBP11.19□□□□□ -0.62
LDLR-208ENST00000558518 SARDHQ9UL12 918 aa11.19□□□□□ -0.62
LDLR-208ENST00000558518 SEC22BO75396 215 aa11.18□□□□□ -0.62
LDLR-208ENST00000558518 MT-ND2P03891 347 aa11.18□□□□□ -0.62
LDLR-208ENST00000558518 CD36P16671 472 aa11.18□□□□□ -0.62
LDLR-208ENST00000558518 PNPLA4P41247 253 aa11.18□□□□□ -0.62
LDLR-208ENST00000558518 SEMG2Q02383 582 aa11.18□□□□□ -0.62
LDLR-208ENST00000558518 MTA1Q13330 715 aa11.18□□□□□ -0.62
LDLR-208ENST00000558518 NKG7Q16617 165 aa11.18□□□□□ -0.62
LDLR-208ENST00000558518 DPY19L1Q2PZI1 675 aa11.18□□□□□ -0.62
LDLR-208ENST00000558518 ATAD3BQ5T9A4 648 aa11.18□□□□□ -0.62
LDLR-208ENST00000558518 Q6ZPB1 254 aaPredicted RBP11.18□□□□□ -0.62
LDLR-208ENST00000558518 TMEM179BQ7Z7N9 219 aa11.18□□□□□ -0.62
LDLR-208ENST00000558518 HID1Q8IV36 788 aa11.18□□□□□ -0.62
LDLR-208ENST00000558518 FAR1Q8WVX9 515 aa11.18□□□□□ -0.62
LDLR-208ENST00000558518 FAM120BQ96EK7 910 aaKnown RBP11.18□□□□□ -0.62
LDLR-208ENST00000558518 BARD1Q99728 777 aaKnown RBP11.18□□□□□ -0.62
LDLR-208ENST00000558518 SMOC2Q9H3U7 446 aa11.18□□□□□ -0.62
LDLR-208ENST00000558518 RUBCNLQ9H714 662 aa11.18□□□□□ -0.62
LDLR-208ENST00000558518 PAK1IP1Q9NWT1 392 aaPredicted RBP11.18□□□□□ -0.62
LDLR-208ENST00000558518 SCN3BQ9NY72 215 aa11.18□□□□□ -0.62
LDLR-208ENST00000558518 TAS2R13Q9NYV9 303 aa11.18□□□□□ -0.62
LDLR-208ENST00000558518 GMPPBQ9Y5P6 360 aa11.18□□□□□ -0.62
LDLR-208ENST00000558518 GPR45Q9Y5Y3 372 aa11.18□□□□□ -0.62
LDLR-208ENST00000558518 ZNF701M0R085 212 aaPredicted RBP11.18□□□□□ -0.62
LDLR-208ENST00000558518 M0R129 80 aa11.18□□□□□ -0.62
LDLR-208ENST00000558518 GPR182O15218 404 aa11.18□□□□□ -0.62
LDLR-208ENST00000558518 CCNKO75909 580 aa11.18□□□□□ -0.62
LDLR-208ENST00000558518 HTR1AP08908 422 aa11.18□□□□□ -0.62
LDLR-208ENST00000558518 CDH1P12830 882 aa11.18□□□□□ -0.62
LDLR-208ENST00000558518 IDH2P48735 452 aaKnown RBP11.18□□□□□ -0.62
LDLR-208ENST00000558518 ST13P50502 369 aaKnown RBP11.18□□□□□ -0.62
LDLR-208ENST00000558518 OXA1LQ15070 435 aa11.18□□□□□ -0.62
LDLR-208ENST00000558518 CRY1Q16526 586 aa11.18□□□□□ -0.62
LDLR-208ENST00000558518 FAM187BQ17R55 369 aa11.18□□□□□ -0.62
LDLR-208ENST00000558518 NEK10Q6ZWH5 1172 aa11.18□□□□□ -0.62
LDLR-208ENST00000558518 DEFB132Q7Z7B7 95 aa11.18□□□□□ -0.62
LDLR-208ENST00000558518 GPSM1Q86YR5 675 aa11.18□□□□□ -0.62
LDLR-208ENST00000558518 C3orf58Q8NDZ4 430 aa11.18□□□□□ -0.62
LDLR-208ENST00000558518 OR4L1Q8NH43 312 aa11.18□□□□□ -0.62
LDLR-208ENST00000558518 EEF1AKMT1Q8WVE0 214 aa11.18□□□□□ -0.62
LDLR-208ENST00000558518 ULK4Q96C45 1275 aa11.18□□□□□ -0.62
LDLR-208ENST00000558518 UBXN10Q96LJ8 280 aa11.18□□□□□ -0.62
LDLR-208ENST00000558518 C16orf70Q9BSU1 422 aa11.18□□□□□ -0.62
LDLR-208ENST00000558518 CEP44Q9C0F1 390 aa11.18□□□□□ -0.62
LDLR-208ENST00000558518 TP63Q9H3D4 680 aaPredicted RBP11.18□□□□□ -0.62
LDLR-208ENST00000558518 TMEM9Q9P0T7 183 aa11.18□□□□□ -0.62
LDLR-208ENST00000558518 TRMT6Q9UJA5 497 aaKnown RBP11.18□□□□□ -0.62
LDLR-208ENST00000558518 NBNO60934 754 aa11.18□□□□□ -0.62
LDLR-208ENST00000558518 IGFBP5P24593 272 aa11.18□□□□□ -0.62
LDLR-208ENST00000558518 EPHA2P29317 976 aa11.18□□□□□ -0.62
LDLR-208ENST00000558518 ACVRL1P37023 503 aa11.18□□□□□ -0.62
LDLR-208ENST00000558518 LEPRP48357 1165 aaKnown RBP11.18□□□□□ -0.62
LDLR-208ENST00000558518 RENBPP51606 427 aa11.18□□□□□ -0.62
LDLR-208ENST00000558518 TRIM60Q495X7 471 aa11.18□□□□□ -0.62
LDLR-208ENST00000558518 RFTN2Q52LD8 501 aaPredicted RBP11.18□□□□□ -0.62
LDLR-208ENST00000558518 SPANXN4Q5MJ08 99 aa11.18□□□□□ -0.62
LDLR-208ENST00000558518 MARCH8Q5T0T0 291 aa11.18□□□□□ -0.62
LDLR-208ENST00000558518 KIAA0408Q6ZU52 694 aa11.18□□□□□ -0.62
LDLR-208ENST00000558518 SMARCD1Q96GM5 515 aa11.18□□□□□ -0.62
LDLR-208ENST00000558518 CEP19Q96LK0 163 aa11.18□□□□□ -0.62
LDLR-208ENST00000558518 TSSK3Q96PN8 268 aa11.18□□□□□ -0.62
LDLR-208ENST00000558518 TPK1Q9H3S4 243 aa11.18□□□□□ -0.62
LDLR-208ENST00000558518 GDAP2Q9NXN4 497 aa11.18□□□□□ -0.62
LDLR-208ENST00000558518 C3orf18Q9UK00 162 aa11.18□□□□□ -0.62
LDLR-208ENST00000558518 PRMT5O14744 637 aaPredicted RBP11.17□□□□□ -0.62
LDLR-208ENST00000558518 JRKO75564 520 aa11.17□□□□□ -0.62
LDLR-208ENST00000558518 HSPA7P48741 367 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms