RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 CAPRIN2Q6IMN6 1127 aaKnown RBP10.47□□□□□ -0.73
LINC00239-201ENST00000556973 MRNIPQ6NTE8 343 aa10.47□□□□□ -0.73
LINC00239-201ENST00000556973 TMEM71Q6P5X7 295 aa10.47□□□□□ -0.73
LINC00239-201ENST00000556973 WDR74Q6RFH5 385 aaPredicted RBP10.47□□□□□ -0.73
LINC00239-201ENST00000556973 TMEM26Q6ZUK4 368 aa10.47□□□□□ -0.73
LINC00239-201ENST00000556973 MICALCLQ6ZW33 695 aa10.47□□□□□ -0.73
LINC00239-201ENST00000556973 MAATS1Q7Z4T9 603 aa10.47□□□□□ -0.73
LINC00239-201ENST00000556973 SDCCAG8Q86SQ7 713 aaPredicted RBP10.47□□□□□ -0.73
LINC00239-201ENST00000556973 TMEM135Q86UB9 458 aa10.47□□□□□ -0.73
LINC00239-201ENST00000556973 JAMLQ86YT9 394 aa10.47□□□□□ -0.73
LINC00239-201ENST00000556973 LSMEM2Q8N112 164 aa10.47□□□□□ -0.73
LINC00239-201ENST00000556973 SPATA4Q8NEY3 305 aa10.47□□□□□ -0.73
LINC00239-201ENST00000556973 GPR150Q8NGU9 434 aa10.47□□□□□ -0.73
LINC00239-201ENST00000556973 HM13Q8TCT9 377 aa10.47□□□□□ -0.73
LINC00239-201ENST00000556973 NAT14Q8WUY8 206 aa10.47□□□□□ -0.73
LINC00239-201ENST00000556973 ZFPM2Q8WW38 1151 aa10.47□□□□□ -0.73
LINC00239-201ENST00000556973 TMEM159Q96B96 161 aa10.47□□□□□ -0.73
LINC00239-201ENST00000556973 NXPE2Q96DL1 559 aa10.47□□□□□ -0.73
LINC00239-201ENST00000556973 TRIM44Q96DX7 344 aaPredicted RBP10.47□□□□□ -0.73
LINC00239-201ENST00000556973 CCDC97Q96F63 343 aaPredicted RBP10.47□□□□□ -0.73
LINC00239-201ENST00000556973 ATXN7L3BQ96GX2 97 aa10.47□□□□□ -0.73
LINC00239-201ENST00000556973 LIN37Q96GY3 246 aaPredicted RBP10.47□□□□□ -0.73
LINC00239-201ENST00000556973 SIGLEC10Q96LC7 697 aa10.47□□□□□ -0.73
LINC00239-201ENST00000556973 KRT12Q99456 494 aa10.47□□□□□ -0.73
LINC00239-201ENST00000556973 WWP1Q9H0M0 922 aa10.47□□□□□ -0.73
LINC00239-201ENST00000556973 POLR1BQ9H9Y6 1135 aa10.47□□□□□ -0.73
LINC00239-201ENST00000556973 RDH14Q9HBH5 336 aa10.47□□□□□ -0.73
LINC00239-201ENST00000556973 PSMD13Q9UNM6 376 aa10.47□□□□□ -0.73
LINC00239-201ENST00000556973 GOLGA4Q13439 2230 aaKnown RBP10.47□□□□□ -0.73
LINC00239-201ENST00000556973 CCDC187A0A096LP49 1063 aa10.46□□□□□ -0.73
LINC00239-201ENST00000556973 LILRA5A6NI73 299 aa10.46□□□□□ -0.73
LINC00239-201ENST00000556973 NDC80O14777 642 aa10.46□□□□□ -0.73
LINC00239-201ENST00000556973 LIN7AO14910 233 aaPredicted RBP10.46□□□□□ -0.73
LINC00239-201ENST00000556973 PFDN6O15212 129 aa10.46□□□□□ -0.73
LINC00239-201ENST00000556973 TTI1O43156 1089 aa10.46□□□□□ -0.73
LINC00239-201ENST00000556973 DUX1O43812 170 aa10.46□□□□□ -0.73
LINC00239-201ENST00000556973 OR1I1O60431 355 aa10.46□□□□□ -0.73
LINC00239-201ENST00000556973 USP1O94782 785 aa10.46□□□□□ -0.73
LINC00239-201ENST00000556973 POLBP06746 335 aa10.46□□□□□ -0.73
LINC00239-201ENST00000556973 SLC35G4P0C7Q5 338 aa10.46□□□□□ -0.73
LINC00239-201ENST00000556973 MTHFD1P11586 935 aaKnown RBP10.46□□□□□ -0.73
LINC00239-201ENST00000556973 HOXB3P14651 431 aaPredicted RBP10.46□□□□□ -0.73
LINC00239-201ENST00000556973 ARCN1P48444 511 aaKnown RBP10.46□□□□□ -0.73
LINC00239-201ENST00000556973 CD151P48509 253 aa10.46□□□□□ -0.73
LINC00239-201ENST00000556973 PPM1FP49593 454 aaPredicted RBP10.46□□□□□ -0.73
LINC00239-201ENST00000556973 LIMK2P53671 638 aa10.46□□□□□ -0.73
LINC00239-201ENST00000556973 EIF3IQ13347 325 aaKnown RBP10.46□□□□□ -0.73
LINC00239-201ENST00000556973 TRA2AQ13595 282 aaKnown RBP eCLIP10.46□□□□□ -0.73
LINC00239-201ENST00000556973 MORF4L2Q15014 288 aa10.46□□□□□ -0.73
LINC00239-201ENST00000556973 ANKRD20A4Q4UJ75 823 aa10.46□□□□□ -0.73
LINC00239-201ENST00000556973 ZNF658BQ4V348 819 aaPredicted RBP10.46□□□□□ -0.73
LINC00239-201ENST00000556973 KIAA0930Q6ICG6 404 aaPredicted RBP10.46□□□□□ -0.73
LINC00239-201ENST00000556973 IGF2-ASQ6U949 168 aa10.46□□□□□ -0.73
LINC00239-201ENST00000556973 CES3Q6UWW8 571 aa10.46□□□□□ -0.73
LINC00239-201ENST00000556973 XKR5Q6UX68 686 aa10.46□□□□□ -0.73
LINC00239-201ENST00000556973 ZNF574Q6ZN55 896 aaPredicted RBP10.46□□□□□ -0.73
LINC00239-201ENST00000556973 B3GNT8Q7Z7M8 397 aa10.46□□□□□ -0.73
LINC00239-201ENST00000556973 LRRC6Q86X45 466 aa10.46□□□□□ -0.73
LINC00239-201ENST00000556973 ZNF761Q86XN6 746 aaPredicted RBP10.46□□□□□ -0.73
LINC00239-201ENST00000556973 SLITRK4Q8IW52 837 aa10.46□□□□□ -0.73
LINC00239-201ENST00000556973 OR4D9Q8NGE8 314 aa10.46□□□□□ -0.73
LINC00239-201ENST00000556973 WDR36Q8NI36 951 aaKnown RBP10.46□□□□□ -0.73
LINC00239-201ENST00000556973 MDM1Q8TC05 714 aa10.46□□□□□ -0.73
LINC00239-201ENST00000556973 NCSTNQ92542 709 aa10.46□□□□□ -0.73
LINC00239-201ENST00000556973 C16orf45Q96MC5 204 aaPredicted RBP10.46□□□□□ -0.73
LINC00239-201ENST00000556973 FCRL3Q96P31 734 aaPredicted RBP10.46□□□□□ -0.73
LINC00239-201ENST00000556973 INSM2Q96T92 566 aaPredicted RBP10.46□□□□□ -0.73
LINC00239-201ENST00000556973 TCF12Q99081 682 aa10.46□□□□□ -0.73
LINC00239-201ENST00000556973 NAT9Q9BTE0 207 aa10.46□□□□□ -0.73
LINC00239-201ENST00000556973 TSSK1BQ9BXA7 367 aa10.46□□□□□ -0.73
LINC00239-201ENST00000556973 TBC1D10AQ9BXI6 508 aa10.46□□□□□ -0.73
LINC00239-201ENST00000556973 FOXP3Q9BZS1 431 aa10.46□□□□□ -0.73
LINC00239-201ENST00000556973 SEMA6CQ9H3T2 930 aa10.46□□□□□ -0.73
LINC00239-201ENST00000556973 COG4Q9H9E3 785 aa10.46□□□□□ -0.73
LINC00239-201ENST00000556973 SATB2Q9UPW6 733 aa10.46□□□□□ -0.73
LINC00239-201ENST00000556973 PCDHGA8Q9Y5G5 932 aa10.46□□□□□ -0.73
LINC00239-201ENST00000556973 HEBP2Q9Y5Z4 205 aa10.46□□□□□ -0.73
LINC00239-201ENST00000556973 MAD1L1Q9Y6D9 718 aa10.46□□□□□ -0.73
LINC00239-201ENST00000556973 PRSS21Q9Y6M0 314 aa10.46□□□□□ -0.73
LINC00239-201ENST00000556973 RPS6KL1Q9Y6S9 549 aa10.46□□□□□ -0.73
LINC00239-201ENST00000556973 COLEC10Q9Y6Z7 277 aa10.46□□□□□ -0.73
LINC00239-201ENST00000556973 PIKFYVEQ9Y2I7 2098 aa10.46□□□□□ -0.74
LINC00239-201ENST00000556973 UNC13CQ8NB66 2214 aa10.45□□□□□ -0.74
LINC00239-201ENST00000556973 IGHV5-10-1A0A0J9YXX1 117 aa10.45□□□□□ -0.74
LINC00239-201ENST00000556973 FAM187AA6NFU0 413 aa10.45□□□□□ -0.74
LINC00239-201ENST00000556973 EFCAB8A8MWE9 144 aa10.45□□□□□ -0.74
LINC00239-201ENST00000556973 PRMT5O14744 637 aaPredicted RBP10.45□□□□□ -0.74
LINC00239-201ENST00000556973 NDUFS3O75489 264 aa10.45□□□□□ -0.74
LINC00239-201ENST00000556973 DXOO77932 396 aaKnown RBP10.45□□□□□ -0.74
LINC00239-201ENST00000556973 UBXN7O94888 489 aa10.45□□□□□ -0.74
LINC00239-201ENST00000556973 MPOP05164 745 aa10.45□□□□□ -0.74
LINC00239-201ENST00000556973 AMD1P17707 334 aa10.45□□□□□ -0.74
LINC00239-201ENST00000556973 ARNTP27540 789 aa10.45□□□□□ -0.74
LINC00239-201ENST00000556973 NDUFS1P28331 727 aa10.45□□□□□ -0.74
LINC00239-201ENST00000556973 GABREP78334 506 aa10.45□□□□□ -0.74
LINC00239-201ENST00000556973 PLOD1Q02809 727 aaPredicted RBP10.45□□□□□ -0.74
LINC00239-201ENST00000556973 CFHR1Q03591 330 aa10.45□□□□□ -0.74
LINC00239-201ENST00000556973 GPR18Q14330 331 aa10.45□□□□□ -0.74
LINC00239-201ENST00000556973 KRT33BQ14525 404 aa10.45□□□□□ -0.74
LINC00239-201ENST00000556973 DNAJC21Q5F1R6 531 aaKnown RBP10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms