RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 OR9I1Q8NGQ6 314 aa11.54□□□□□ -0.56
SHMT2-212ENST00000554467 STAG3L4Q8TBR4 150 aa11.54□□□□□ -0.56
SHMT2-212ENST00000554467 HERVK_113Q902F9 699 aa11.54□□□□□ -0.56
SHMT2-212ENST00000554467 KIAA1191Q96A73 305 aa11.54□□□□□ -0.56
SHMT2-212ENST00000554467 ABHD8Q96I13 439 aa11.54□□□□□ -0.56
SHMT2-212ENST00000554467 NPAS2Q99743 824 aa11.54□□□□□ -0.56
SHMT2-212ENST00000554467 CLPBQ9H078 707 aa11.54□□□□□ -0.56
SHMT2-212ENST00000554467 SUV39H2Q9H5I1 410 aa11.54□□□□□ -0.56
SHMT2-212ENST00000554467 EML4Q9HC35 981 aaKnown RBP11.54□□□□□ -0.56
SHMT2-212ENST00000554467 CD274Q9NZQ7 290 aa11.54□□□□□ -0.56
SHMT2-212ENST00000554467 VTI1BQ9UEU0 232 aa11.54□□□□□ -0.56
SHMT2-212ENST00000554467 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP11.53□□□□□ -0.56
SHMT2-212ENST00000554467 CARNS1A5YM72 827 aa11.53□□□□□ -0.56
SHMT2-212ENST00000554467 STX16-NPEPL1H3BU86 382 aa11.53□□□□□ -0.56
SHMT2-212ENST00000554467 PRMT5O14744 637 aaPredicted RBP11.53□□□□□ -0.56
SHMT2-212ENST00000554467 PPARGP37231 505 aaPredicted RBP11.53□□□□□ -0.56
SHMT2-212ENST00000554467 PSMD7P51665 324 aa11.53□□□□□ -0.56
SHMT2-212ENST00000554467 MTTPP55157 894 aa11.53□□□□□ -0.56
SHMT2-212ENST00000554467 IL2P60568 153 aa11.53□□□□□ -0.56
SHMT2-212ENST00000554467 ZNF77Q15935 545 aa11.53□□□□□ -0.56
SHMT2-212ENST00000554467 C12orf40Q86WS4 652 aa11.53□□□□□ -0.56
SHMT2-212ENST00000554467 DDIASQ8IXT1 998 aa11.53□□□□□ -0.56
SHMT2-212ENST00000554467 ZNF707Q96C28 371 aaPredicted RBP11.53□□□□□ -0.56
SHMT2-212ENST00000554467 HBEGFQ99075 208 aa11.53□□□□□ -0.56
SHMT2-212ENST00000554467 DERL2Q9GZP9 239 aa11.53□□□□□ -0.56
SHMT2-212ENST00000554467 EIF2B4Q9UI10 523 aaKnown RBP11.53□□□□□ -0.56
SHMT2-212ENST00000554467 SORCS3Q9UPU3 1222 aa11.53□□□□□ -0.56
SHMT2-212ENST00000554467 DMTF1Q9Y222 760 aa11.53□□□□□ -0.56
SHMT2-212ENST00000554467 KERAO60938 352 aa11.53□□□□□ -0.56
SHMT2-212ENST00000554467 LINC00032P0C843 101 aa11.53□□□□□ -0.56
SHMT2-212ENST00000554467 CDH2P19022 906 aaPredicted RBP11.53□□□□□ -0.56
SHMT2-212ENST00000554467 SLC26A3P40879 764 aa11.53□□□□□ -0.56
SHMT2-212ENST00000554467 HALP42357 657 aa11.53□□□□□ -0.56
SHMT2-212ENST00000554467 PTGER3P43115 390 aa11.53□□□□□ -0.56
SHMT2-212ENST00000554467 CLCN7P51798 805 aa11.53□□□□□ -0.56
SHMT2-212ENST00000554467 AAGABQ6PD74 315 aa11.53□□□□□ -0.56
SHMT2-212ENST00000554467 MARVELD2Q8N4S9 558 aa11.53□□□□□ -0.56
SHMT2-212ENST00000554467 P2RY12Q9H244 342 aa11.53□□□□□ -0.56
SHMT2-212ENST00000554467 TFB2MQ9H5Q4 396 aaKnown RBP11.53□□□□□ -0.56
SHMT2-212ENST00000554467 HS3ST2Q9Y278 367 aa11.53□□□□□ -0.56
SHMT2-212ENST00000554467 DNAJC15Q9Y5T4 150 aa11.53□□□□□ -0.56
SHMT2-212ENST00000554467 KRT87PA6NCN2 255 aa11.53□□□□□ -0.56
SHMT2-212ENST00000554467 ADAM23O75077 832 aa11.53□□□□□ -0.56
SHMT2-212ENST00000554467 XYLBO75191 536 aa11.53□□□□□ -0.56
SHMT2-212ENST00000554467 SLC25A14O95258 325 aaPredicted RBP11.53□□□□□ -0.56
SHMT2-212ENST00000554467 EPHA5P54756 1037 aa11.53□□□□□ -0.56
SHMT2-212ENST00000554467 PTSQ03393 145 aa11.53□□□□□ -0.56
SHMT2-212ENST00000554467 PRSS36Q5K4E3 855 aa11.53□□□□□ -0.56
SHMT2-212ENST00000554467 RAB44Q7Z6P3 723 aaPredicted RBP11.53□□□□□ -0.56
SHMT2-212ENST00000554467 TMIGD2Q96BF3 282 aa11.53□□□□□ -0.56
SHMT2-212ENST00000554467 L3HYPDHQ96EM0 354 aa11.53□□□□□ -0.56
SHMT2-212ENST00000554467 MCOLN1Q9GZU1 580 aa11.53□□□□□ -0.56
SHMT2-212ENST00000554467 ZBTB26Q9HCK0 441 aa11.53□□□□□ -0.56
SHMT2-212ENST00000554467 TBCCD1Q9NVR7 557 aa11.53□□□□□ -0.56
SHMT2-212ENST00000554467 CCDC167Q9P0B6 97 aa11.53□□□□□ -0.56
SHMT2-212ENST00000554467 B4GALT6Q9UBX8 382 aa11.53□□□□□ -0.56
SHMT2-212ENST00000554467 STK39Q9UEW8 545 aa11.53□□□□□ -0.56
SHMT2-212ENST00000554467 APPL1Q9UKG1 709 aa11.53□□□□□ -0.56
SHMT2-212ENST00000554467 GBF1Q92538 1859 aa11.52□□□□□ -0.56
SHMT2-212ENST00000554467 H7C0S8 307 aa11.52□□□□□ -0.57
SHMT2-212ENST00000554467 PIP5K1BO14986 540 aa11.52□□□□□ -0.57
SHMT2-212ENST00000554467 NAA20P61599 178 aa11.52□□□□□ -0.57
SHMT2-212ENST00000554467 ATP13A5Q4VNC0 1218 aa11.52□□□□□ -0.57
SHMT2-212ENST00000554467 CARD16Q5EG05 197 aa11.52□□□□□ -0.57
SHMT2-212ENST00000554467 AARS2Q5JTZ9 985 aaKnown RBP11.52□□□□□ -0.57
SHMT2-212ENST00000554467 MFSD4BQ5TF39 518 aa11.52□□□□□ -0.57
SHMT2-212ENST00000554467 GPSM1Q86YR5 675 aa11.52□□□□□ -0.57
SHMT2-212ENST00000554467 OR2A12Q8NGT7 310 aa11.52□□□□□ -0.57
SHMT2-212ENST00000554467 SMG7Q92540 1137 aaKnown RBP11.52□□□□□ -0.57
SHMT2-212ENST00000554467 SCAMP4Q969E2 229 aa11.52□□□□□ -0.57
SHMT2-212ENST00000554467 ACOX2Q99424 681 aa11.52□□□□□ -0.57
SHMT2-212ENST00000554467 IGFLR1Q9H665 355 aa11.52□□□□□ -0.57
SHMT2-212ENST00000554467 BRD9Q9H8M2 597 aa11.52□□□□□ -0.57
SHMT2-212ENST00000554467 OTOL1A6NHN0 477 aaPredicted RBP11.52□□□□□ -0.57
SHMT2-212ENST00000554467 TRPC5OSA6NMA1 111 aa11.52□□□□□ -0.57
SHMT2-212ENST00000554467 SLCO1B7G3V0H7 640 aa11.52□□□□□ -0.57
SHMT2-212ENST00000554467 DENRO43583 198 aaKnown RBP11.52□□□□□ -0.57
SHMT2-212ENST00000554467 ATP5BP06576 529 aaKnown RBP11.52□□□□□ -0.57
SHMT2-212ENST00000554467 ITGALP20701 1170 aa11.52□□□□□ -0.57
SHMT2-212ENST00000554467 NRIP1P48552 1158 aa11.52□□□□□ -0.57
SHMT2-212ENST00000554467 METAP1P53582 386 aa11.52□□□□□ -0.57
SHMT2-212ENST00000554467 RELAQ04206 551 aa11.52□□□□□ -0.57
SHMT2-212ENST00000554467 CLCQ05315 142 aa11.52□□□□□ -0.57
SHMT2-212ENST00000554467 TGFBIQ15582 683 aa11.52□□□□□ -0.57
SHMT2-212ENST00000554467 RBBP7Q16576 425 aa11.52□□□□□ -0.57
SHMT2-212ENST00000554467 ARSIQ5FYB1 569 aa11.52□□□□□ -0.57
SHMT2-212ENST00000554467 ZNF648Q5T619 568 aaPredicted RBP11.52□□□□□ -0.57
SHMT2-212ENST00000554467 MBOAT1Q6ZNC8 495 aa11.52□□□□□ -0.57
SHMT2-212ENST00000554467 FAM156AQ8NDB6 213 aa11.52□□□□□ -0.57
SHMT2-212ENST00000554467 PBXIP1Q96AQ6 731 aa11.52□□□□□ -0.57
SHMT2-212ENST00000554467 MRPL1Q9BYD6 325 aaKnown RBP11.52□□□□□ -0.57
SHMT2-212ENST00000554467 POPDC3Q9HBV1 291 aa11.52□□□□□ -0.57
SHMT2-212ENST00000554467 DOLKQ9UPQ8 538 aa11.52□□□□□ -0.57
SHMT2-212ENST00000554467 ATG2BQ96BY7 2078 aa11.52□□□□□ -0.57
SHMT2-212ENST00000554467 HELZP42694 1942 aaKnown RBP11.52□□□□□ -0.57
SHMT2-212ENST00000554467 SH3PXD2BA1X283 911 aa11.51□□□□□ -0.57
SHMT2-212ENST00000554467 PFDN6O15212 129 aa11.51□□□□□ -0.57
SHMT2-212ENST00000554467 SOCS5O75159 536 aa11.51□□□□□ -0.57
SHMT2-212ENST00000554467 LEFTY1O75610 366 aa11.51□□□□□ -0.57
SHMT2-212ENST00000554467 ESR1P03372 595 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms