RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 B3GNT6Q6ZMB0 384 aa5.66□□□□□ -1.5
SCFD1-208ENST00000553278 TMEM182Q6ZP80 229 aaPredicted RBP5.66□□□□□ -1.5
SCFD1-208ENST00000553278 SHFQ7M4L6 423 aa5.66□□□□□ -1.5
SCFD1-208ENST00000553278 ANKRD13BQ86YJ7 626 aa5.66□□□□□ -1.5
SCFD1-208ENST00000553278 BEST3Q8N1M1 668 aa5.66□□□□□ -1.5
SCFD1-208ENST00000553278 SFRP1Q8N474 314 aa5.66□□□□□ -1.5
SCFD1-208ENST00000553278 ZNF611Q8N823 705 aa5.66□□□□□ -1.5
SCFD1-208ENST00000553278 SLC44A5Q8NCS7 719 aa5.66□□□□□ -1.5
SCFD1-208ENST00000553278 ZFAND2BQ8WV99 257 aa5.66□□□□□ -1.5
SCFD1-208ENST00000553278 DNAAF4Q8WXU2 420 aa5.66□□□□□ -1.5
SCFD1-208ENST00000553278 TRIB2Q92519 343 aa5.66□□□□□ -1.5
SCFD1-208ENST00000553278 EEF2KMTQ96G04 330 aa5.66□□□□□ -1.5
SCFD1-208ENST00000553278 PRMT6Q96LA8 375 aaPredicted RBP5.66□□□□□ -1.5
SCFD1-208ENST00000553278 RUFY1Q96T51 708 aa5.66□□□□□ -1.5
SCFD1-208ENST00000553278 FEVQ99581 238 aa5.66□□□□□ -1.5
SCFD1-208ENST00000553278 GFI1Q99684 422 aa5.66□□□□□ -1.5
SCFD1-208ENST00000553278 CPNE1Q99829 537 aa5.66□□□□□ -1.5
SCFD1-208ENST00000553278 HAUS8Q9BT25 410 aa5.66□□□□□ -1.5
SCFD1-208ENST00000553278 KRT23Q9C075 422 aa5.66□□□□□ -1.5
SCFD1-208ENST00000553278 TOR3AQ9H497 397 aa5.66□□□□□ -1.5
SCFD1-208ENST00000553278 TBC1D17Q9HA65 648 aa5.66□□□□□ -1.5
SCFD1-208ENST00000553278 CNGB3Q9NQW8 809 aa5.66□□□□□ -1.5
SCFD1-208ENST00000553278 TMEM161AQ9NX61 479 aa5.66□□□□□ -1.5
SCFD1-208ENST00000553278 CYP39A1Q9NYL5 469 aa5.66□□□□□ -1.5
SCFD1-208ENST00000553278 OR6C3Q9NZP0 311 aa5.66□□□□□ -1.5
SCFD1-208ENST00000553278 SH3BGRL2Q9UJC5 107 aa5.66□□□□□ -1.5
SCFD1-208ENST00000553278 TLK1Q9UKI8 766 aa5.66□□□□□ -1.5
SCFD1-208ENST00000553278 MTUS1Q9ULD2 1270 aa5.66□□□□□ -1.5
SCFD1-208ENST00000553278 B3GALT5Q9Y2C3 310 aa5.66□□□□□ -1.5
SCFD1-208ENST00000553278 PAM16Q9Y3D7 125 aa5.66□□□□□ -1.5
SCFD1-208ENST00000553278 SRPRBQ9Y5M8 271 aaKnown RBP5.66□□□□□ -1.5
SCFD1-208ENST00000553278 A0A1W2PPQ1 181 aa5.65□□□□□ -1.5
SCFD1-208ENST00000553278 GAGE12JA6NER3 117 aa5.65□□□□□ -1.5
SCFD1-208ENST00000553278 WNT9BO14905 357 aa5.65□□□□□ -1.5
SCFD1-208ENST00000553278 KCNN4O15554 427 aa5.65□□□□□ -1.5
SCFD1-208ENST00000553278 VEGFDO43915 354 aa5.65□□□□□ -1.5
SCFD1-208ENST00000553278 SLC16A8O95907 504 aa5.65□□□□□ -1.5
SCFD1-208ENST00000553278 GH1P01241 217 aa5.65□□□□□ -1.5
SCFD1-208ENST00000553278 INSRRP14616 1297 aa5.65□□□□□ -1.5
SCFD1-208ENST00000553278 TIA1P31483 386 aaKnown RBP eCLIP5.65□□□□□ -1.5
SCFD1-208ENST00000553278 HNRNPH1P31943 449 aaKnown RBP5.65□□□□□ -1.5
SCFD1-208ENST00000553278 SLC9A3P48764 834 aa5.65□□□□□ -1.5
SCFD1-208ENST00000553278 TPD52P55327 224 aaPredicted RBP5.65□□□□□ -1.5
SCFD1-208ENST00000553278 PTENP60484 403 aa5.65□□□□□ -1.5
SCFD1-208ENST00000553278 GHRHRQ02643 423 aa5.65□□□□□ -1.5
SCFD1-208ENST00000553278 GAGE2BQ13066 116 aa5.65□□□□□ -1.5
SCFD1-208ENST00000553278 TAF7Q15545 349 aaPredicted RBP5.65□□□□□ -1.5
SCFD1-208ENST00000553278 GAGE2EQ4V326 116 aa5.65□□□□□ -1.5
SCFD1-208ENST00000553278 PPP6R3Q5H9R7 873 aaPredicted RBP5.65□□□□□ -1.5
SCFD1-208ENST00000553278 LRRC73Q5JTD7 316 aa5.65□□□□□ -1.5
SCFD1-208ENST00000553278 GAGE2AQ6NT46 116 aa5.65□□□□□ -1.5
SCFD1-208ENST00000553278 DLK2Q6UY11 383 aa5.65□□□□□ -1.5
SCFD1-208ENST00000553278 ZNF534Q76KX8 674 aa5.65□□□□□ -1.5
SCFD1-208ENST00000553278 MIER3Q7Z3K6 550 aa5.65□□□□□ -1.5
SCFD1-208ENST00000553278 PHLDB2Q86SQ0 1253 aa5.65□□□□□ -1.5
SCFD1-208ENST00000553278 GPSM1Q86YR5 675 aa5.65□□□□□ -1.5
SCFD1-208ENST00000553278 GCSAMQ8N6F7 178 aa5.65□□□□□ -1.5
SCFD1-208ENST00000553278 BOLLQ8N9W6 283 aaKnown RBP5.65□□□□□ -1.5
SCFD1-208ENST00000553278 SLC38A9Q8NBW4 561 aa5.65□□□□□ -1.5
SCFD1-208ENST00000553278 NCOA7Q8NI08 942 aa5.65□□□□□ -1.5
SCFD1-208ENST00000553278 DENND1AQ8TEH3 1009 aa5.65□□□□□ -1.5
SCFD1-208ENST00000553278 RAD54LQ92698 747 aa5.65□□□□□ -1.5
SCFD1-208ENST00000553278 TAAR8Q969N4 342 aa5.65□□□□□ -1.5
SCFD1-208ENST00000553278 TSGA13Q96PP4 275 aa5.65□□□□□ -1.5
SCFD1-208ENST00000553278 SLX1AQ9BQ83 275 aa5.65□□□□□ -1.5
SCFD1-208ENST00000553278 WDR77Q9BQA1 342 aaPredicted RBP5.65□□□□□ -1.5
SCFD1-208ENST00000553278 TRIM7Q9C029 511 aa5.65□□□□□ -1.5
SCFD1-208ENST00000553278 KLK15Q9H2R5 256 aa5.65□□□□□ -1.5
SCFD1-208ENST00000553278 WDR26Q9H7D7 661 aa5.65□□□□□ -1.5
SCFD1-208ENST00000553278 AKIRIN1Q9H9L7 192 aaPredicted RBP5.65□□□□□ -1.5
SCFD1-208ENST00000553278 KLHL1Q9NR64 748 aa5.65□□□□□ -1.5
SCFD1-208ENST00000553278 ACTR3BQ9P1U1 418 aa5.65□□□□□ -1.5
SCFD1-208ENST00000553278 GAGE2DQ9UEU5 116 aa5.65□□□□□ -1.5
SCFD1-208ENST00000553278 CDC14AQ9UNH5 594 aa5.65□□□□□ -1.5
SCFD1-208ENST00000553278 PIN4Q9Y237 131 aaKnown RBP5.65□□□□□ -1.5
SCFD1-208ENST00000553278 GRIP1Q9Y3R0 1128 aa5.65□□□□□ -1.5
SCFD1-208ENST00000553278 TRIM17Q9Y577 477 aa5.65□□□□□ -1.5
SCFD1-208ENST00000553278 NME7Q9Y5B8 376 aa5.65□□□□□ -1.5
SCFD1-208ENST00000553278 A0A0G2JLL6 359 aaPredicted RBP5.64□□□□□ -1.51
SCFD1-208ENST00000553278 C13orf42A0A1B0GVH6 325 aa5.64□□□□□ -1.51
SCFD1-208ENST00000553278 HEPACAM2A8MVW5 462 aa5.64□□□□□ -1.51
SCFD1-208ENST00000553278 B4DGG1 531 aa5.64□□□□□ -1.51
SCFD1-208ENST00000553278 TO15178 435 aa5.64□□□□□ -1.51
SCFD1-208ENST00000553278 SELENOFO60613 162 aa5.64□□□□□ -1.51
SCFD1-208ENST00000553278 AKAP3O75969 853 aa5.64□□□□□ -1.51
SCFD1-208ENST00000553278 REC8O95072 547 aa5.64□□□□□ -1.51
SCFD1-208ENST00000553278 OR2T7P0C7T2 308 aa5.64□□□□□ -1.51
SCFD1-208ENST00000553278 TCF4P15884 667 aa5.64□□□□□ -1.51
SCFD1-208ENST00000553278 CD27P26842 260 aa5.64□□□□□ -1.51
SCFD1-208ENST00000553278 BDKRB2P30411 391 aa5.64□□□□□ -1.51
SCFD1-208ENST00000553278 APOBEC1P41238 236 aaKnown RBP5.64□□□□□ -1.51
SCFD1-208ENST00000553278 CASP9P55211 416 aa5.64□□□□□ -1.51
SCFD1-208ENST00000553278 PRKCZQ05513 592 aa5.64□□□□□ -1.51
SCFD1-208ENST00000553278 KRTAP19-4Q3LI73 84 aa5.64□□□□□ -1.51
SCFD1-208ENST00000553278 TMEM119Q4V9L6 283 aa5.64□□□□□ -1.51
SCFD1-208ENST00000553278 TXNRD3NBQ6F5E7 133 aa5.64□□□□□ -1.51
SCFD1-208ENST00000553278 PRR27Q6MZM9 219 aa5.64□□□□□ -1.51
SCFD1-208ENST00000553278 MIS18BP1Q6P0N0 1132 aa5.64□□□□□ -1.51
SCFD1-208ENST00000553278 NOTUMQ6P988 496 aa5.64□□□□□ -1.51
SCFD1-208ENST00000553278 SLC27A1Q6PCB7 646 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms