RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 RAVER1Q8IY67 606 aaKnown RBP15.46■□□□□ 0.07
CUX1-211ENST00000546411 APOL4Q9BPW4 351 aa15.46■□□□□ 0.07
CUX1-211ENST00000546411 EURLQ9NYK6 297 aa15.46■□□□□ 0.07
CUX1-211ENST00000546411 NUDT4Q9NZJ9 180 aa15.46■□□□□ 0.07
CUX1-211ENST00000546411 hCG_2039718K7EN88 272 aa15.46■□□□□ 0.06
CUX1-211ENST00000546411 ARPC2O15144 300 aa15.46■□□□□ 0.06
CUX1-211ENST00000546411 GALTP07902 379 aa15.46■□□□□ 0.06
CUX1-211ENST00000546411 GNAZP19086 355 aa15.46■□□□□ 0.06
CUX1-211ENST00000546411 SLC7A1P30825 629 aa15.46■□□□□ 0.06
CUX1-211ENST00000546411 CDKN1CP49918 316 aaPredicted RBP15.46■□□□□ 0.06
CUX1-211ENST00000546411 AP1S1P61966 158 aa15.46■□□□□ 0.06
CUX1-211ENST00000546411 BROXQ5VW32 411 aa15.46■□□□□ 0.06
CUX1-211ENST00000546411 CYP20A1Q6UW02 462 aa15.46■□□□□ 0.06
CUX1-211ENST00000546411 OR52J3Q8NH60 311 aa15.46■□□□□ 0.06
CUX1-211ENST00000546411 SOX17Q9H6I2 414 aaPredicted RBP15.46■□□□□ 0.06
CUX1-211ENST00000546411 NME7Q9Y5B8 376 aa15.46■□□□□ 0.06
CUX1-211ENST00000546411 A0A1W2PQ45 241 aaPredicted RBP15.45■□□□□ 0.06
CUX1-211ENST00000546411 A0A1W2PQY0 241 aa15.45■□□□□ 0.06
CUX1-211ENST00000546411 GPR39O43194 453 aa15.45■□□□□ 0.06
CUX1-211ENST00000546411 DLGAP3O95886 979 aa15.45■□□□□ 0.06
CUX1-211ENST00000546411 TRBC1P01850 177 aa15.45■□□□□ 0.06
CUX1-211ENST00000546411 G6PDP11413 515 aa15.45■□□□□ 0.06
CUX1-211ENST00000546411 HPCAL1P37235 193 aa15.45■□□□□ 0.06
CUX1-211ENST00000546411 ERVK-8P63133 956 aa15.45■□□□□ 0.06
CUX1-211ENST00000546411 ZNF33AQ06730 810 aa15.45■□□□□ 0.06
CUX1-211ENST00000546411 PSAPL1Q6NUJ1 521 aa15.45■□□□□ 0.06
CUX1-211ENST00000546411 OR4F6Q8NGB9 312 aa15.45■□□□□ 0.06
CUX1-211ENST00000546411 COL26A1Q96A83 441 aa15.45■□□□□ 0.06
CUX1-211ENST00000546411 YIPF2Q9BWQ6 316 aa15.45■□□□□ 0.06
CUX1-211ENST00000546411 SGK2Q9HBY8 427 aa15.45■□□□□ 0.06
CUX1-211ENST00000546411 SH3GLB1Q9Y371 365 aa15.45■□□□□ 0.06
CUX1-211ENST00000546411 CNOT3O75175 753 aaKnown RBP15.45■□□□□ 0.06
CUX1-211ENST00000546411 RNASEH2AO75792 299 aaKnown RBP15.45■□□□□ 0.06
CUX1-211ENST00000546411 TP53BP2Q13625 1128 aa15.45■□□□□ 0.06
CUX1-211ENST00000546411 CBX2Q14781 532 aaPredicted RBP15.45■□□□□ 0.06
CUX1-211ENST00000546411 TGFBIQ15582 683 aa15.45■□□□□ 0.06
CUX1-211ENST00000546411 SMYD5Q6GMV2 418 aa15.45■□□□□ 0.06
CUX1-211ENST00000546411 SLC13A3Q8WWT9 602 aa15.45■□□□□ 0.06
CUX1-211ENST00000546411 ITCHQ96J02 903 aa15.45■□□□□ 0.06
CUX1-211ENST00000546411 CERS4Q9HA82 394 aa15.45■□□□□ 0.06
CUX1-211ENST00000546411 DNAJC11Q9NVH1 559 aa15.45■□□□□ 0.06
CUX1-211ENST00000546411 TPRKBQ9Y3C4 175 aa15.45■□□□□ 0.06
CUX1-211ENST00000546411 GOLGB1Q14789 3259 aaKnown RBP15.45■□□□□ 0.06
CUX1-211ENST00000546411 TRMUO75648 421 aaKnown RBP15.45■□□□□ 0.06
CUX1-211ENST00000546411 RHDQ02161 417 aa15.45■□□□□ 0.06
CUX1-211ENST00000546411 Q6ZVU0 165 aa15.45■□□□□ 0.06
CUX1-211ENST00000546411 CYP4V2Q6ZWL3 525 aaPredicted RBP15.45■□□□□ 0.06
CUX1-211ENST00000546411 KDM1BQ8NB78 822 aa15.45■□□□□ 0.06
CUX1-211ENST00000546411 AP2M1Q96CW1 435 aa15.45■□□□□ 0.06
CUX1-211ENST00000546411 SLC45A3Q96JT2 553 aa15.45■□□□□ 0.06
CUX1-211ENST00000546411 DGKBQ9Y6T7 804 aa15.45■□□□□ 0.06
CUX1-211ENST00000546411 C2orf78A6NCI8 922 aa15.44■□□□□ 0.06
CUX1-211ENST00000546411 GRK3P35626 688 aa15.44■□□□□ 0.06
CUX1-211ENST00000546411 MAGEA6P43360 314 aa15.44■□□□□ 0.06
CUX1-211ENST00000546411 LEPRP48357 1165 aaKnown RBP15.44■□□□□ 0.06
CUX1-211ENST00000546411 MS4A2Q01362 244 aa15.44■□□□□ 0.06
CUX1-211ENST00000546411 TJAP1Q5JTD0 557 aa15.44■□□□□ 0.06
CUX1-211ENST00000546411 MORN1Q5T089 497 aa15.44■□□□□ 0.06
CUX1-211ENST00000546411 MZB1Q8WU39 189 aa15.44■□□□□ 0.06
CUX1-211ENST00000546411 CLP1Q92989 425 aaKnown RBP15.44■□□□□ 0.06
CUX1-211ENST00000546411 NACC2Q96BF6 587 aa15.44■□□□□ 0.06
CUX1-211ENST00000546411 PLD4Q96BZ4 506 aa15.44■□□□□ 0.06
CUX1-211ENST00000546411 GIMAP4Q9NUV9 329 aa15.44■□□□□ 0.06
CUX1-211ENST00000546411 RAB23Q9ULC3 237 aa15.44■□□□□ 0.06
CUX1-211ENST00000546411 HMX2A2RU54 273 aa15.44■□□□□ 0.06
CUX1-211ENST00000546411 GRID2O43424 1007 aa15.44■□□□□ 0.06
CUX1-211ENST00000546411 BCAS2O75934 225 aaPredicted RBP15.44■□□□□ 0.06
CUX1-211ENST00000546411 SERPINB1P30740 379 aa15.44■□□□□ 0.06
CUX1-211ENST00000546411 LAPTM5Q13571 262 aa15.44■□□□□ 0.06
CUX1-211ENST00000546411 CHST15Q7LFX5 561 aaPredicted RBP15.44■□□□□ 0.06
CUX1-211ENST00000546411 ARHGAP12Q8IWW6 846 aa15.44■□□□□ 0.06
CUX1-211ENST00000546411 TRIM48Q8IWZ4 208 aa15.44■□□□□ 0.06
CUX1-211ENST00000546411 CFAP206Q8IYR0 622 aa15.44■□□□□ 0.06
CUX1-211ENST00000546411 SETD9Q8NE22 299 aa15.44■□□□□ 0.06
CUX1-211ENST00000546411 TRIM45Q9H8W5 580 aaPredicted RBP15.44■□□□□ 0.06
CUX1-211ENST00000546411 DMTF1Q9Y222 760 aa15.44■□□□□ 0.06
CUX1-211ENST00000546411 CEP290O15078 2479 aa15.44■□□□□ 0.06
CUX1-211ENST00000546411 LCHNA4D1U4 455 aa15.44■□□□□ 0.06
CUX1-211ENST00000546411 H3BM21 787 aa15.44■□□□□ 0.06
CUX1-211ENST00000546411 ERAL1O75616 437 aaKnown RBP15.44■□□□□ 0.06
CUX1-211ENST00000546411 UNC50Q53HI1 259 aa15.44■□□□□ 0.06
CUX1-211ENST00000546411 SDE2Q6IQ49 451 aa15.44■□□□□ 0.06
CUX1-211ENST00000546411 C17orf99Q6UX52 265 aa15.44■□□□□ 0.06
CUX1-211ENST00000546411 CHST9Q7L1S5 443 aa15.44■□□□□ 0.06
CUX1-211ENST00000546411 NELL1Q92832 810 aa15.44■□□□□ 0.06
CUX1-211ENST00000546411 KIAA1191Q96A73 305 aa15.44■□□□□ 0.06
CUX1-211ENST00000546411 XIRP1Q702N8 1843 aaKnown RBP15.44■□□□□ 0.06
CUX1-211ENST00000546411 H3BSA7 217 aa15.44■□□□□ 0.06
CUX1-211ENST00000546411 SAP18O00422 153 aaKnown RBP15.44■□□□□ 0.06
CUX1-211ENST00000546411 LINGO3P0C6S8 592 aa15.44■□□□□ 0.06
CUX1-211ENST00000546411 DDX5P17844 614 aaKnown RBP15.44■□□□□ 0.06
CUX1-211ENST00000546411 SH3BP2P78314 561 aa15.44■□□□□ 0.06
CUX1-211ENST00000546411 PROSER1Q86XN7 944 aa15.44■□□□□ 0.06
CUX1-211ENST00000546411 BBS7Q8IWZ6 715 aa15.44■□□□□ 0.06
CUX1-211ENST00000546411 TMEM30AQ9NV96 361 aa15.44■□□□□ 0.06
CUX1-211ENST00000546411 USE1Q9NZ43 259 aa15.44■□□□□ 0.06
CUX1-211ENST00000546411 RAPGEFL1Q9UHV5 662 aa15.44■□□□□ 0.06
CUX1-211ENST00000546411 DAPK2Q9UIK4 370 aa15.44■□□□□ 0.06
CUX1-211ENST00000546411 PTGR1Q14914 329 aa15.43■□□□□ 0.06
CUX1-211ENST00000546411 HERC3Q15034 1050 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms