RNA–Protein interactions for RNA: ENST00000543658.5

DDB1-223, Transcript of damage specific DNA binding protein 1, human

TSL 4

Gene DDB1, Length 571 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-223	ENST00000543658	HCN4	Q9Y3Q4	1203 aa		11.7	□□□□□ -0.54
DDB1-223	ENST00000543658	PRKAB1	Q9Y478	270 aa		11.7	□□□□□ -0.54
DDB1-223	ENST00000543658	DGKB	Q9Y6T7	804 aa		11.7	□□□□□ -0.54
DDB1-223	ENST00000543658	ANKRD12	Q6UB98	2062 aa		11.7	□□□□□ -0.54
DDB1-223	ENST00000543658		A0A087X1B8	175 aa		11.69	□□□□□ -0.54
DDB1-223	ENST00000543658	C17orf113	A0A1B0GUU1	675 aa		11.69	□□□□□ -0.54
DDB1-223	ENST00000543658	PABPN1L	A6NDY0	278 aa	Known RBP	11.69	□□□□□ -0.54
DDB1-223	ENST00000543658	MGAT4D	A6NG13	374 aa		11.69	□□□□□ -0.54
DDB1-223	ENST00000543658	LIN7A	O14910	233 aa	Predicted RBP	11.69	□□□□□ -0.54
DDB1-223	ENST00000543658	SCAMP1	O15126	338 aa		11.69	□□□□□ -0.54
DDB1-223	ENST00000543658	POP7	O75817	140 aa	Known RBP	11.69	□□□□□ -0.54
DDB1-223	ENST00000543658	MPO	P05164	745 aa		11.69	□□□□□ -0.54
DDB1-223	ENST00000543658	CD9	P21926	228 aa		11.69	□□□□□ -0.54
DDB1-223	ENST00000543658	DGKA	P23743	735 aa		11.69	□□□□□ -0.54
DDB1-223	ENST00000543658	ARRB1	P49407	418 aa	Predicted RBP	11.69	□□□□□ -0.54
DDB1-223	ENST00000543658	KPNA2	P52292	529 aa	Known RBP	11.69	□□□□□ -0.54
DDB1-223	ENST00000543658	ATXN3	P54252	364 aa	Predicted RBP	11.69	□□□□□ -0.54
DDB1-223	ENST00000543658	TAS2R39	P59534	338 aa		11.69	□□□□□ -0.54
DDB1-223	ENST00000543658	HNRNPK	P61978	463 aa	Known RBP eCLIP	11.69	□□□□□ -0.54
DDB1-223	ENST00000543658	ARHGAP8	P85298	464 aa		11.69	□□□□□ -0.54
DDB1-223	ENST00000543658	TCF15	Q12870	199 aa		11.69	□□□□□ -0.54
DDB1-223	ENST00000543658	EIF2B5	Q13144	721 aa	Known RBP	11.69	□□□□□ -0.54
DDB1-223	ENST00000543658	TRIM61	Q5EBN2	209 aa		11.69	□□□□□ -0.54
DDB1-223	ENST00000543658	PLEKHS1	Q5SXH7	462 aa		11.69	□□□□□ -0.54
DDB1-223	ENST00000543658	TPRG1L	Q5T0D9	272 aa		11.69	□□□□□ -0.54
DDB1-223	ENST00000543658	CMC1	Q7Z7K0	106 aa		11.69	□□□□□ -0.54
DDB1-223	ENST00000543658	MYO1H	Q8N1T3	1032 aa		11.69	□□□□□ -0.54
DDB1-223	ENST00000543658	NKAP	Q8N5F7	415 aa	Known RBP	11.69	□□□□□ -0.54
DDB1-223	ENST00000543658	SIDT2	Q8NBJ9	832 aa	Known RBP	11.69	□□□□□ -0.54
DDB1-223	ENST00000543658	OR2L2	Q8NH16	312 aa		11.69	□□□□□ -0.54
DDB1-223	ENST00000543658	LKAAEAR1	Q8TD35	194 aa		11.69	□□□□□ -0.54
DDB1-223	ENST00000543658	ASZ1	Q8WWH4	475 aa		11.69	□□□□□ -0.54
DDB1-223	ENST00000543658	INPP5D	Q92835	1189 aa		11.69	□□□□□ -0.54
DDB1-223	ENST00000543658	ZBTB9	Q96C00	473 aa		11.69	□□□□□ -0.54
DDB1-223	ENST00000543658	SCARF2	Q96GP6	870 aa	Predicted RBP	11.69	□□□□□ -0.54
DDB1-223	ENST00000543658	LINC00615	Q96LM1	132 aa	Predicted RBP	11.69	□□□□□ -0.54
DDB1-223	ENST00000543658	MCMBP	Q9BTE3	642 aa		11.69	□□□□□ -0.54
DDB1-223	ENST00000543658	ARRDC1-AS1	Q9H2J1	176 aa		11.69	□□□□□ -0.54
DDB1-223	ENST00000543658	KLC4	Q9NSK0	619 aa		11.69	□□□□□ -0.54
DDB1-223	ENST00000543658	TMEM74B	Q9NUR3	256 aa		11.69	□□□□□ -0.54
DDB1-223	ENST00000543658	SENP1	Q9P0U3	644 aa		11.69	□□□□□ -0.54
DDB1-223	ENST00000543658	SPAST	Q9UBP0	616 aa		11.69	□□□□□ -0.54
DDB1-223	ENST00000543658	SLC6A14	Q9UN76	642 aa		11.69	□□□□□ -0.54
DDB1-223	ENST00000543658	DHRS7	Q9Y394	339 aa		11.69	□□□□□ -0.54
DDB1-223	ENST00000543658	CACNA1E	Q15878	2313 aa		11.69	□□□□□ -0.54
DDB1-223	ENST00000543658	ARHGEF17	Q96PE2	2063 aa	Predicted RBP	11.68	□□□□□ -0.54
DDB1-223	ENST00000543658		A0A096LPK6	155 aa		11.68	□□□□□ -0.54
DDB1-223	ENST00000543658	MAP2K7	O14733	419 aa		11.68	□□□□□ -0.54
DDB1-223	ENST00000543658	KHNYN	O15037	678 aa	Known RBP	11.68	□□□□□ -0.54
DDB1-223	ENST00000543658	YKT6	O15498	198 aa		11.68	□□□□□ -0.54
DDB1-223	ENST00000543658	PHGDH	O43175	533 aa	Known RBP	11.68	□□□□□ -0.54
DDB1-223	ENST00000543658	DFNA5	O60443	496 aa		11.68	□□□□□ -0.54
DDB1-223	ENST00000543658	CER1	O95813	267 aa		11.68	□□□□□ -0.54
DDB1-223	ENST00000543658	CSF2	P04141	144 aa		11.68	□□□□□ -0.54
DDB1-223	ENST00000543658	CBSL	P0DN79	551 aa		11.68	□□□□□ -0.54
DDB1-223	ENST00000543658	ENO3	P13929	434 aa	Predicted RBP	11.68	□□□□□ -0.54
DDB1-223	ENST00000543658	NME1	P15531	152 aa	Known RBP	11.68	□□□□□ -0.54
DDB1-223	ENST00000543658	IDS	P22304	550 aa		11.68	□□□□□ -0.54
DDB1-223	ENST00000543658	CBS	P35520	551 aa		11.68	□□□□□ -0.54
DDB1-223	ENST00000543658	ACTR1B	P42025	376 aa		11.68	□□□□□ -0.54
DDB1-223	ENST00000543658	CDKN2D	P55273	166 aa		11.68	□□□□□ -0.54
DDB1-223	ENST00000543658	IL2	P60568	153 aa		11.68	□□□□□ -0.54
DDB1-223	ENST00000543658	ACTR1A	P61163	376 aa		11.68	□□□□□ -0.54
DDB1-223	ENST00000543658	HSPA14	Q0VDF9	509 aa		11.68	□□□□□ -0.54
DDB1-223	ENST00000543658	ELOC	Q15369	112 aa		11.68	□□□□□ -0.54
DDB1-223	ENST00000543658	TCEA2	Q15560	299 aa		11.68	□□□□□ -0.54
DDB1-223	ENST00000543658	ZNF542P	Q5EBM4	170 aa		11.68	□□□□□ -0.54
DDB1-223	ENST00000543658	KLC3	Q6P597	504 aa		11.68	□□□□□ -0.54
DDB1-223	ENST00000543658	PIM3	Q86V86	326 aa		11.68	□□□□□ -0.54
DDB1-223	ENST00000543658	GKN2	Q86XP6	184 aa		11.68	□□□□□ -0.54
DDB1-223	ENST00000543658	SPATS2	Q86XZ4	545 aa	Known RBP	11.68	□□□□□ -0.54
DDB1-223	ENST00000543658	SRRM1	Q8IYB3	904 aa	Known RBP	11.68	□□□□□ -0.54
DDB1-223	ENST00000543658	CPNE9	Q8IYJ1	553 aa		11.68	□□□□□ -0.54
DDB1-223	ENST00000543658	CFAP206	Q8IYR0	622 aa		11.68	□□□□□ -0.54
DDB1-223	ENST00000543658	FSTL5	Q8N475	847 aa	Predicted RBP	11.68	□□□□□ -0.54
DDB1-223	ENST00000543658	CD200R1	Q8TD46	325 aa		11.68	□□□□□ -0.54
DDB1-223	ENST00000543658	ACMSD	Q8TDX5	336 aa		11.68	□□□□□ -0.54
DDB1-223	ENST00000543658	GLMN	Q92990	594 aa		11.68	□□□□□ -0.54
DDB1-223	ENST00000543658	PGM2	Q96G03	612 aa		11.68	□□□□□ -0.54
DDB1-223	ENST00000543658	FOPNL	Q96NB1	174 aa		11.68	□□□□□ -0.54
DDB1-223	ENST00000543658	SMC6	Q96SB8	1091 aa		11.68	□□□□□ -0.54
DDB1-223	ENST00000543658	OLFM1	Q99784	485 aa		11.68	□□□□□ -0.54
DDB1-223	ENST00000543658	ZDHHC5	Q9C0B5	715 aa		11.68	□□□□□ -0.54
DDB1-223	ENST00000543658	IQCG	Q9H095	443 aa	Known RBP	11.68	□□□□□ -0.54
DDB1-223	ENST00000543658	COG4	Q9H9E3	785 aa		11.68	□□□□□ -0.54
DDB1-223	ENST00000543658	ERVMER34-1	Q9H9K5	563 aa		11.68	□□□□□ -0.54
DDB1-223	ENST00000543658	PCMTD2	Q9NV79	361 aa		11.68	□□□□□ -0.54
DDB1-223	ENST00000543658	TRNAU1AP	Q9NX07	287 aa	Known RBP	11.68	□□□□□ -0.54
DDB1-223	ENST00000543658	KLHL42	Q9P2K6	505 aa		11.68	□□□□□ -0.54
DDB1-223	ENST00000543658	NCDN	Q9UBB6	729 aa		11.68	□□□□□ -0.54
DDB1-223	ENST00000543658	TSR3	Q9UJK0	312 aa	Known RBP	11.68	□□□□□ -0.54
DDB1-223	ENST00000543658	KCNK6	Q9Y257	313 aa		11.68	□□□□□ -0.54
DDB1-223	ENST00000543658	ACOT9	Q9Y305	439 aa		11.68	□□□□□ -0.54
DDB1-223	ENST00000543658	SNX11	Q9Y5W9	270 aa		11.68	□□□□□ -0.54
DDB1-223	ENST00000543658	PCDH15	Q96QU1	1955 aa		11.67	□□□□□ -0.54
DDB1-223	ENST00000543658	PDZK1P1	A8MUH7	402 aa		11.67	□□□□□ -0.54
DDB1-223	ENST00000543658	EIF3F	O00303	357 aa	Predicted RBP	11.67	□□□□□ -0.54
DDB1-223	ENST00000543658	IFRD1	O00458	451 aa	Predicted RBP	11.67	□□□□□ -0.54
DDB1-223	ENST00000543658	SGTA	O43765	313 aa		11.67	□□□□□ -0.54
DDB1-223	ENST00000543658	SNX2	O60749	519 aa		11.67	□□□□□ -0.54

Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms