RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	UGT3A1	Q6NUS8	523 aa		9.98	□□□□□ -0.81
CPSF7-221	ENST00000543545	ZNF549	Q6P9A3	640 aa		9.98	□□□□□ -0.81
CPSF7-221	ENST00000543545	PRR23C	Q6ZRP0	262 aa		9.98	□□□□□ -0.81
CPSF7-221	ENST00000543545	MREG	Q8N565	214 aa		9.98	□□□□□ -0.81
CPSF7-221	ENST00000543545	OR2L2	Q8NH16	312 aa		9.98	□□□□□ -0.81
CPSF7-221	ENST00000543545	FAM45A	Q8TCE6	357 aa		9.98	□□□□□ -0.81
CPSF7-221	ENST00000543545	HM13	Q8TCT9	377 aa		9.98	□□□□□ -0.81
CPSF7-221	ENST00000543545	LKAAEAR1	Q8TD35	194 aa		9.98	□□□□□ -0.81
CPSF7-221	ENST00000543545	SLC44A1	Q8WWI5	657 aa		9.98	□□□□□ -0.81
CPSF7-221	ENST00000543545	TMEM159	Q96B96	161 aa		9.98	□□□□□ -0.81
CPSF7-221	ENST00000543545	VPS39	Q96JC1	886 aa		9.98	□□□□□ -0.81
CPSF7-221	ENST00000543545	LINC00615	Q96LM1	132 aa	Predicted RBP	9.98	□□□□□ -0.81
CPSF7-221	ENST00000543545	PAFAH2	Q99487	392 aa		9.98	□□□□□ -0.81
CPSF7-221	ENST00000543545	RBBP8	Q99708	897 aa		9.98	□□□□□ -0.81
CPSF7-221	ENST00000543545	EPB41L4B	Q9H329	900 aa		9.98	□□□□□ -0.81
CPSF7-221	ENST00000543545	DPEP2	Q9H4A9	486 aa		9.98	□□□□□ -0.81
CPSF7-221	ENST00000543545	TMEM9B	Q9NQ34	198 aa		9.98	□□□□□ -0.81
CPSF7-221	ENST00000543545	UCKL1	Q9NWZ5	548 aa		9.98	□□□□□ -0.81
CPSF7-221	ENST00000543545	TAS2R13	Q9NYV9	303 aa		9.98	□□□□□ -0.81
CPSF7-221	ENST00000543545	TAAR2	Q9P1P5	351 aa		9.98	□□□□□ -0.81
CPSF7-221	ENST00000543545	TRMT6	Q9UJA5	497 aa	Known RBP	9.98	□□□□□ -0.81
CPSF7-221	ENST00000543545	TSR3	Q9UJK0	312 aa	Known RBP	9.98	□□□□□ -0.81
CPSF7-221	ENST00000543545	CORO1C	Q9ULV4	474 aa	Predicted RBP	9.98	□□□□□ -0.81
CPSF7-221	ENST00000543545	MTO1	Q9Y2Z2	717 aa	Known RBP	9.98	□□□□□ -0.81
CPSF7-221	ENST00000543545	KNL1	Q8NG31	2342 aa		9.98	□□□□□ -0.81
CPSF7-221	ENST00000543545	C17orf113	A0A1B0GUU1	675 aa		9.97	□□□□□ -0.81
CPSF7-221	ENST00000543545	KLHL33	A6NCF5	533 aa		9.97	□□□□□ -0.81
CPSF7-221	ENST00000543545	LMO7DN	F2Z398	122 aa		9.97	□□□□□ -0.81
CPSF7-221	ENST00000543545	LIN7A	O14910	233 aa	Predicted RBP	9.97	□□□□□ -0.81
CPSF7-221	ENST00000543545	GFRA3	O60609	400 aa		9.97	□□□□□ -0.81
CPSF7-221	ENST00000543545	KRT37	O76014	449 aa		9.97	□□□□□ -0.81
CPSF7-221	ENST00000543545	ITGA2B	P08514	1039 aa		9.97	□□□□□ -0.81
CPSF7-221	ENST00000543545	RPL10	P27635	214 aa	Known RBP	9.97	□□□□□ -0.81
CPSF7-221	ENST00000543545	CCR7	P32248	378 aa		9.97	□□□□□ -0.81
CPSF7-221	ENST00000543545	SKIV2L2	P42285	1042 aa	Known RBP	9.97	□□□□□ -0.81
CPSF7-221	ENST00000543545	HAL	P42357	657 aa		9.97	□□□□□ -0.81
CPSF7-221	ENST00000543545	SLCO1A2	P46721	670 aa		9.97	□□□□□ -0.81
CPSF7-221	ENST00000543545	PREP	P48147	710 aa		9.97	□□□□□ -0.81
CPSF7-221	ENST00000543545	LIMK2	P53671	638 aa		9.97	□□□□□ -0.81
CPSF7-221	ENST00000543545	PDAP1	Q13442	181 aa	Known RBP	9.97	□□□□□ -0.81
CPSF7-221	ENST00000543545	BMPR2	Q13873	1038 aa		9.97	□□□□□ -0.81
CPSF7-221	ENST00000543545	KRT33B	Q14525	404 aa		9.97	□□□□□ -0.81
CPSF7-221	ENST00000543545	TTLL9	Q3SXZ7	439 aa		9.97	□□□□□ -0.81
CPSF7-221	ENST00000543545	BEND6	Q5SZJ8	279 aa	Predicted RBP	9.97	□□□□□ -0.81
CPSF7-221	ENST00000543545	MROH9	Q5TGP6	573 aa		9.97	□□□□□ -0.81
CPSF7-221	ENST00000543545	FAM83H	Q6ZRV2	1179 aa	Predicted RBP	9.97	□□□□□ -0.81
CPSF7-221	ENST00000543545	RAPH1	Q70E73	1250 aa		9.97	□□□□□ -0.81
CPSF7-221	ENST00000543545	C11orf96	Q7Z7L8	435 aa		9.97	□□□□□ -0.81
CPSF7-221	ENST00000543545	NRROS	Q86YC3	692 aa		9.97	□□□□□ -0.81
CPSF7-221	ENST00000543545	ZBTB2	Q8N680	514 aa		9.97	□□□□□ -0.81
CPSF7-221	ENST00000543545	SIDT2	Q8NBJ9	832 aa	Known RBP	9.97	□□□□□ -0.81
CPSF7-221	ENST00000543545	OR2W6P	Q8NHA6	318 aa		9.97	□□□□□ -0.81
CPSF7-221	ENST00000543545	GPBAR1	Q8TDU6	330 aa		9.97	□□□□□ -0.81
CPSF7-221	ENST00000543545	SAP25	Q8TEE9	199 aa		9.97	□□□□□ -0.81
CPSF7-221	ENST00000543545	SETD7	Q8WTS6	366 aa	Known RBP	9.97	□□□□□ -0.81
CPSF7-221	ENST00000543545	HNRNPLL	Q8WVV9	542 aa	Known RBP	9.97	□□□□□ -0.81
CPSF7-221	ENST00000543545	ASZ1	Q8WWH4	475 aa		9.97	□□□□□ -0.81
CPSF7-221	ENST00000543545	KCNJ9	Q92806	393 aa		9.97	□□□□□ -0.81
CPSF7-221	ENST00000543545	INPP5D	Q92835	1189 aa		9.97	□□□□□ -0.81
CPSF7-221	ENST00000543545	TSPAN17	Q96FV3	270 aa		9.97	□□□□□ -0.81
CPSF7-221	ENST00000543545	GPR21	Q99679	349 aa		9.97	□□□□□ -0.81
CPSF7-221	ENST00000543545	COG4	Q9H9E3	785 aa		9.97	□□□□□ -0.81
CPSF7-221	ENST00000543545	PRDM8	Q9NQV8	689 aa		9.97	□□□□□ -0.81
CPSF7-221	ENST00000543545	RXFP3	Q9NSD7	469 aa		9.97	□□□□□ -0.81
CPSF7-221	ENST00000543545	SIRPG	Q9P1W8	387 aa		9.97	□□□□□ -0.81
CPSF7-221	ENST00000543545	GULP1	Q9UBP9	304 aa		9.97	□□□□□ -0.81
CPSF7-221	ENST00000543545	TBK1	Q9UHD2	729 aa		9.97	□□□□□ -0.81
CPSF7-221	ENST00000543545	ACSL5	Q9ULC5	683 aa		9.97	□□□□□ -0.81
CPSF7-221	ENST00000543545	PSMD13	Q9UNM6	376 aa		9.97	□□□□□ -0.81
CPSF7-221	ENST00000543545	PLAA	Q9Y263	795 aa		9.97	□□□□□ -0.81
CPSF7-221	ENST00000543545	CSNK1G3	Q9Y6M4	447 aa		9.97	□□□□□ -0.81
CPSF7-221	ENST00000543545	SPAG17	Q6Q759	2223 aa		9.97	□□□□□ -0.81
CPSF7-221	ENST00000543545	IQANK1	A0A1B0GTG1	560 aa		9.96	□□□□□ -0.82
CPSF7-221	ENST00000543545	C4orf47	A7E2U8	309 aa		9.96	□□□□□ -0.82
CPSF7-221	ENST00000543545		B4DGG1	531 aa		9.96	□□□□□ -0.82
CPSF7-221	ENST00000543545	IFRD1	O00458	451 aa	Predicted RBP	9.96	□□□□□ -0.82
CPSF7-221	ENST00000543545	RASGRF2	O14827	1237 aa		9.96	□□□□□ -0.82
CPSF7-221	ENST00000543545	SLC35G4	P0C7Q5	338 aa		9.96	□□□□□ -0.82
CPSF7-221	ENST00000543545	STMN1	P16949	149 aa		9.96	□□□□□ -0.82
CPSF7-221	ENST00000543545	AOAH	P28039	575 aa		9.96	□□□□□ -0.82
CPSF7-221	ENST00000543545	CLCNKA	P51800	687 aa		9.96	□□□□□ -0.82
CPSF7-221	ENST00000543545	CDKN2D	P55273	166 aa		9.96	□□□□□ -0.82
CPSF7-221	ENST00000543545	TAS2R39	P59534	338 aa		9.96	□□□□□ -0.82
CPSF7-221	ENST00000543545	POU4F1	Q01851	419 aa		9.96	□□□□□ -0.82
CPSF7-221	ENST00000543545	PLOD1	Q02809	727 aa	Predicted RBP	9.96	□□□□□ -0.82
CPSF7-221	ENST00000543545	ABR	Q12979	859 aa		9.96	□□□□□ -0.82
CPSF7-221	ENST00000543545	INAVA	Q3KP66	663 aa		9.96	□□□□□ -0.82
CPSF7-221	ENST00000543545	PLEKHS1	Q5SXH7	462 aa		9.96	□□□□□ -0.82
CPSF7-221	ENST00000543545	METRNL	Q641Q3	311 aa		9.96	□□□□□ -0.82
CPSF7-221	ENST00000543545	LVRN	Q6Q4G3	990 aa		9.96	□□□□□ -0.82
CPSF7-221	ENST00000543545	PIM3	Q86V86	326 aa		9.96	□□□□□ -0.82
CPSF7-221	ENST00000543545	TRIM48	Q8IWZ4	208 aa		9.96	□□□□□ -0.82
CPSF7-221	ENST00000543545	SDR16C5	Q8N3Y7	309 aa		9.96	□□□□□ -0.82
CPSF7-221	ENST00000543545	SLC25A45	Q8N413	288 aa		9.96	□□□□□ -0.82
CPSF7-221	ENST00000543545	LILRA3	Q8N6C8	439 aa	Predicted RBP	9.96	□□□□□ -0.82
CPSF7-221	ENST00000543545	EID2	Q8N6I1	236 aa		9.96	□□□□□ -0.82
CPSF7-221	ENST00000543545	ACVR1C	Q8NER5	493 aa		9.96	□□□□□ -0.82
CPSF7-221	ENST00000543545	CFAP61	Q8NHU2	1237 aa		9.96	□□□□□ -0.82
CPSF7-221	ENST00000543545	ZDHHC1	Q8WTX9	485 aa		9.96	□□□□□ -0.82
CPSF7-221	ENST00000543545	DCAKD	Q8WVC6	231 aa		9.96	□□□□□ -0.82

Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms