RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, human

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-222	ENST00000541204	AARS2	Q5JTZ9	985 aa	Known RBP	12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	OTUD3	Q5T2D3	398 aa	Predicted RBP	12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	ANKS6	Q68DC2	871 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	NANOGP8	Q6NSW7	305 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	PSAPL1	Q6NUJ1	521 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	UGT3A1	Q6NUS8	523 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	SLC39A5	Q6ZMH5	540 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	DCBLD1	Q8N8Z6	715 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	GPR150	Q8NGU9	434 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	KIAA1191	Q96A73	305 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	KLF16	Q9BXK1	252 aa	Predicted RBP	12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	CCDC68	Q9H2F9	335 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	NANOG	Q9H9S0	305 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	ZNF334	Q9HCZ1	680 aa	Predicted RBP	12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	INTS10	Q9NVR2	710 aa	Known RBP	12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	AIG1	Q9NVV5	245 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	ZNHIT2	Q9UHR6	403 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	ZNF225	Q9UK10	706 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	CDH7	Q9ULB5	785 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	PCDHB9	Q9Y5E1	797 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	CDH23	Q9H251	3354 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	C2orf81	A6NN90	581 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	B4GAT1	O43505	415 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	SLC22A3	O75751	556 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	ABLIM3	O94929	683 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	PRAMEF12	O95522	483 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	CD160	O95971	181 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	LDLR	P01130	860 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	CXCL10	P02778	98 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	SOD2	P04179	222 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	C7	P10643	843 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	DCK	P27707	260 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	MC4R	P32245	332 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	CYP4F8	P98187	520 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	BTG3	Q14201	252 aa	Predicted RBP	12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	HABP4	Q5JVS0	413 aa	Known RBP	12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	ACBD5	Q5T8D3	534 aa	Predicted RBP	12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	TAS2R42	Q7RTR8	314 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	TMEM150A	Q86TG1	271 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	ZNF554	Q86TJ5	538 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	SYVN1	Q86TM6	617 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	ZBTB46	Q86UZ6	589 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	TBC1D21	Q8IYX1	336 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	SMYD1	Q8NB12	490 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	OR2T11	Q8NH01	316 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	BIRC7	Q96CA5	298 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	RNF145	Q96MT1	663 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	PLEKHG4B	Q96PX9	1271 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	GPR21	Q99679	349 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	PAIP1	Q9H074	479 aa	Known RBP	12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	POPDC3	Q9HBV1	291 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	NLE1	Q9NVX2	485 aa	Predicted RBP	12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	MED16	Q9Y2X0	877 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	NPEPPSL1	A6NEC2	478 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	IQCF5	A8MTL0	148 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	NIPSNAP2	O75323	286 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	VPS4B	O75351	444 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	EED	O75530	441 aa	Known RBP	12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	ALPI	P09923	528 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	PRR35	P0CG20	571 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	CR2	P20023	1033 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	HRH2	P25021	359 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	POLR2J	P52435	117 aa	Known RBP	12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	RHOA	P61586	193 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	SEMG2	Q02383	582 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	ZIK1	Q3SY52	487 aa	Predicted RBP	12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	OGFOD2	Q6N063	350 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	TMEM214	Q6NUQ4	689 aa	Known RBP	12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	XKR5	Q6UX68	686 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	SPATA19	Q7Z5L4	167 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	TMEM199	Q8N511	208 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	ZNF558	Q96NG5	402 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	CHID1	Q9BWS9	393 aa		12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	PAK6	Q9NQU5	681 aa	Predicted RBP	12.35	□□□□□ -0.43
RNF4-222	ENST00000541204	ANKRD66	B4E2M5	251 aa		12.34	□□□□□ -0.43
RNF4-222	ENST00000541204	BNIP3L	O60238	219 aa		12.34	□□□□□ -0.43
RNF4-222	ENST00000541204	ELK4	P28324	431 aa		12.34	□□□□□ -0.43
RNF4-222	ENST00000541204	IL12A	P29459	219 aa		12.34	□□□□□ -0.43
RNF4-222	ENST00000541204	HMOX2	P30519	316 aa		12.34	□□□□□ -0.43
RNF4-222	ENST00000541204	POLR2I	P36954	125 aa	Known RBP	12.34	□□□□□ -0.43
RNF4-222	ENST00000541204	CSK	P41240	450 aa		12.34	□□□□□ -0.43
RNF4-222	ENST00000541204	OR4D2	P58180	307 aa		12.34	□□□□□ -0.43
RNF4-222	ENST00000541204	CDH18	Q13634	790 aa		12.34	□□□□□ -0.43
RNF4-222	ENST00000541204	ARHGEF6	Q15052	776 aa		12.34	□□□□□ -0.43
RNF4-222	ENST00000541204	RBBP7	Q16576	425 aa		12.34	□□□□□ -0.43
RNF4-222	ENST00000541204		Q6ZNX1	250 aa		12.34	□□□□□ -0.43
RNF4-222	ENST00000541204	TPGS1	Q6ZTW0	290 aa		12.34	□□□□□ -0.43
RNF4-222	ENST00000541204	RALGPS2	Q86X27	583 aa	Predicted RBP	12.34	□□□□□ -0.43
RNF4-222	ENST00000541204	SIDT2	Q8NBJ9	832 aa	Known RBP	12.34	□□□□□ -0.43
RNF4-222	ENST00000541204	PAPD5	Q8NDF8	572 aa	Known RBP	12.34	□□□□□ -0.43
RNF4-222	ENST00000541204	ZNF420	Q8TAQ5	688 aa	Predicted RBP	12.34	□□□□□ -0.43
RNF4-222	ENST00000541204	FUBP1	Q96AE4	644 aa	Known RBP	12.34	□□□□□ -0.43
RNF4-222	ENST00000541204	FAM210A	Q96ND0	272 aa		12.34	□□□□□ -0.43
RNF4-222	ENST00000541204	DOK1	Q99704	481 aa		12.34	□□□□□ -0.43
RNF4-222	ENST00000541204	DERL2	Q9GZP9	239 aa		12.34	□□□□□ -0.43
RNF4-222	ENST00000541204	SYTL2	Q9HCH5	934 aa		12.34	□□□□□ -0.43
RNF4-222	ENST00000541204	TMEM39A	Q9NV64	488 aa		12.34	□□□□□ -0.43
RNF4-222	ENST00000541204	FAIM	Q9NVQ4	179 aa		12.34	□□□□□ -0.43
RNF4-222	ENST00000541204	PKD2L2	Q9NZM6	624 aa		12.34	□□□□□ -0.43
RNF4-222	ENST00000541204	LEF1	Q9UJU2	399 aa	Predicted RBP	12.34	□□□□□ -0.43

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