RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 NQO1P15559 274 aaKnown RBP11.81□□□□□ -0.52
CLIP1-208ENST00000537004 C21orf59P57076 290 aa11.81□□□□□ -0.52
CLIP1-208ENST00000537004 SEMG2Q02383 582 aa11.81□□□□□ -0.52
CLIP1-208ENST00000537004 DLG1Q12959 904 aa11.81□□□□□ -0.52
CLIP1-208ENST00000537004 LRRC8EQ6NSJ5 796 aa11.81□□□□□ -0.52
CLIP1-208ENST00000537004 NAPRTQ6XQN6 538 aa11.81□□□□□ -0.52
CLIP1-208ENST00000537004 TTC7BQ86TV6 843 aa11.81□□□□□ -0.52
CLIP1-208ENST00000537004 CAMK1DQ8IU85 385 aa11.81□□□□□ -0.52
CLIP1-208ENST00000537004 WDR75Q8IWA0 830 aaKnown RBP11.81□□□□□ -0.52
CLIP1-208ENST00000537004 KIF2BQ8N4N8 673 aa11.81□□□□□ -0.52
CLIP1-208ENST00000537004 LPCAT1Q8NF37 534 aa11.81□□□□□ -0.52
CLIP1-208ENST00000537004 NXNL1Q96CM4 212 aa11.81□□□□□ -0.52
CLIP1-208ENST00000537004 PRR11Q96HE9 360 aaPredicted RBP11.81□□□□□ -0.52
CLIP1-208ENST00000537004 GPR78Q96P69 363 aa11.81□□□□□ -0.52
CLIP1-208ENST00000537004 OLFM1Q99784 485 aa11.81□□□□□ -0.52
CLIP1-208ENST00000537004 PCDHGC4Q9Y5F7 938 aa11.81□□□□□ -0.52
CLIP1-208ENST00000537004 RAI2Q9Y5P3 530 aa11.81□□□□□ -0.52
CLIP1-208ENST00000537004 PLXNA2O75051 1894 aa11.8□□□□□ -0.52
CLIP1-208ENST00000537004 IGLON5A6NGN9 336 aa11.8□□□□□ -0.52
CLIP1-208ENST00000537004 TMEM114B3SHH9 223 aa11.8□□□□□ -0.52
CLIP1-208ENST00000537004 TARM1B6A8C7 271 aa11.8□□□□□ -0.52
CLIP1-208ENST00000537004 TLR4O00206 839 aa11.8□□□□□ -0.52
CLIP1-208ENST00000537004 FCHO1O14526 889 aa11.8□□□□□ -0.52
CLIP1-208ENST00000537004 H2AFYO75367 372 aaKnown RBP11.8□□□□□ -0.52
CLIP1-208ENST00000537004 CSRP1P21291 193 aaKnown RBP11.8□□□□□ -0.52
CLIP1-208ENST00000537004 ZNF140P52738 457 aaPredicted RBP11.8□□□□□ -0.52
CLIP1-208ENST00000537004 TSNAXIP1Q2TAA8 658 aa11.8□□□□□ -0.52
CLIP1-208ENST00000537004 TMEM259Q4ZIN3 620 aa11.8□□□□□ -0.52
CLIP1-208ENST00000537004 HECTD2Q5U5R9 776 aa11.8□□□□□ -0.52
CLIP1-208ENST00000537004 MRNIPQ6NTE8 343 aa11.8□□□□□ -0.52
CLIP1-208ENST00000537004 IL27RAQ6UWB1 636 aa11.8□□□□□ -0.52
CLIP1-208ENST00000537004 GLT6D1Q7Z4J2 308 aa11.8□□□□□ -0.52
CLIP1-208ENST00000537004 ZSWIM9Q86XI8 627 aa11.8□□□□□ -0.52
CLIP1-208ENST00000537004 GATAD2AQ86YP4 633 aa11.8□□□□□ -0.52
CLIP1-208ENST00000537004 NAXDQ8IW45 347 aa11.8□□□□□ -0.52
CLIP1-208ENST00000537004 SPATA6LQ8N4H0 392 aa11.8□□□□□ -0.52
CLIP1-208ENST00000537004 TMEM145Q8NBT3 493 aa11.8□□□□□ -0.52
CLIP1-208ENST00000537004 GPR150Q8NGU9 434 aa11.8□□□□□ -0.52
CLIP1-208ENST00000537004 SETD7Q8WTS6 366 aaKnown RBP11.8□□□□□ -0.52
CLIP1-208ENST00000537004 TSPAN17Q96FV3 270 aa11.8□□□□□ -0.52
CLIP1-208ENST00000537004 TMEM237Q96Q45 408 aa11.8□□□□□ -0.52
CLIP1-208ENST00000537004 TACO1Q9BSH4 297 aaKnown RBP11.8□□□□□ -0.52
CLIP1-208ENST00000537004 ADGRE3Q9BY15 652 aa11.8□□□□□ -0.52
CLIP1-208ENST00000537004 LRMDAQ9H2I8 198 aa11.8□□□□□ -0.52
CLIP1-208ENST00000537004 NLE1Q9NVX2 485 aaPredicted RBP11.8□□□□□ -0.52
CLIP1-208ENST00000537004 XPR1Q9UBH6 696 aa11.8□□□□□ -0.52
CLIP1-208ENST00000537004 NEMP1O14524 444 aa11.79□□□□□ -0.52
CLIP1-208ENST00000537004 CLGNO14967 610 aa11.79□□□□□ -0.52
CLIP1-208ENST00000537004 RAD51BO15315 384 aa11.79□□□□□ -0.52
CLIP1-208ENST00000537004 HSPA4LO95757 839 aa11.79□□□□□ -0.52
CLIP1-208ENST00000537004 SPINK2P20155 84 aa11.79□□□□□ -0.52
CLIP1-208ENST00000537004 KPNA2P52292 529 aaKnown RBP11.79□□□□□ -0.52
CLIP1-208ENST00000537004 ELF3P78545 371 aaPredicted RBP11.79□□□□□ -0.52
CLIP1-208ENST00000537004 SIM1P81133 766 aaPredicted RBP11.79□□□□□ -0.52
CLIP1-208ENST00000537004 TRAF2Q12933 501 aa11.79□□□□□ -0.52
CLIP1-208ENST00000537004 SLC14A1Q13336 389 aa11.79□□□□□ -0.52
CLIP1-208ENST00000537004 TAF1AQ15573 450 aaPredicted RBP11.79□□□□□ -0.52
CLIP1-208ENST00000537004 SETMARQ53H47 684 aaPredicted RBP11.79□□□□□ -0.52
CLIP1-208ENST00000537004 LIPMQ5VYY2 423 aa11.79□□□□□ -0.52
CLIP1-208ENST00000537004 CYB5D1Q6P9G0 228 aa11.79□□□□□ -0.52
CLIP1-208ENST00000537004 OR4L1Q8NH43 312 aa11.79□□□□□ -0.52
CLIP1-208ENST00000537004 PDCD6IPQ8WUM4 868 aaKnown RBP11.79□□□□□ -0.52
CLIP1-208ENST00000537004 HEXDCQ8WVB3 486 aa11.79□□□□□ -0.52
CLIP1-208ENST00000537004 CDKN2AIPNLQ96HQ2 116 aa11.79□□□□□ -0.52
CLIP1-208ENST00000537004 LRIG1Q96JA1 1093 aa11.79□□□□□ -0.52
CLIP1-208ENST00000537004 SMIM14Q96QK8 99 aa11.79□□□□□ -0.52
CLIP1-208ENST00000537004 EBF4Q9BQW3 602 aa11.79□□□□□ -0.52
CLIP1-208ENST00000537004 GATA5Q9BWX5 397 aaPredicted RBP11.79□□□□□ -0.52
CLIP1-208ENST00000537004 UNKQ9C0B0 810 aaKnown RBP11.79□□□□□ -0.52
CLIP1-208ENST00000537004 NMUR2Q9GZQ4 415 aa11.79□□□□□ -0.52
CLIP1-208ENST00000537004 CXorf56Q9H5V9 222 aa11.79□□□□□ -0.52
CLIP1-208ENST00000537004 CATSPERZQ9NTU4 200 aa11.79□□□□□ -0.52
CLIP1-208ENST00000537004 PNPOQ9NVS9 261 aa11.79□□□□□ -0.52
CLIP1-208ENST00000537004 VWA7Q9Y334 891 aa11.79□□□□□ -0.52
CLIP1-208ENST00000537004 POM121BA6NF01 834 aa11.79□□□□□ -0.52
CLIP1-208ENST00000537004 C2orf81A6NN90 581 aa11.79□□□□□ -0.52
CLIP1-208ENST00000537004 ANKRD66B4E2M5 251 aa11.79□□□□□ -0.52
CLIP1-208ENST00000537004 PRAMEF26H0Y7S4 382 aa11.79□□□□□ -0.52
CLIP1-208ENST00000537004 KIF1CO43896 1103 aaKnown RBP11.79□□□□□ -0.52
CLIP1-208ENST00000537004 TIMP2P16035 220 aa11.79□□□□□ -0.52
CLIP1-208ENST00000537004 PRKAA2P54646 552 aa11.79□□□□□ -0.52
CLIP1-208ENST00000537004 NXPH1P58417 271 aa11.79□□□□□ -0.52
CLIP1-208ENST00000537004 RAD51Q06609 339 aa11.79□□□□□ -0.52
CLIP1-208ENST00000537004 SEMA3AQ14563 771 aa11.79□□□□□ -0.52
CLIP1-208ENST00000537004 SHBQ15464 509 aa11.79□□□□□ -0.52
CLIP1-208ENST00000537004 OR4K2Q8NGD2 314 aa11.79□□□□□ -0.52
CLIP1-208ENST00000537004 SCG3Q8WXD2 468 aaKnown RBP11.79□□□□□ -0.52
CLIP1-208ENST00000537004 INPP5DQ92835 1189 aa11.79□□□□□ -0.52
CLIP1-208ENST00000537004 RILPQ96NA2 401 aa11.79□□□□□ -0.52
CLIP1-208ENST00000537004 ELF4Q99607 663 aaPredicted RBP11.79□□□□□ -0.52
CLIP1-208ENST00000537004 MRPL57Q9BQC6 102 aaKnown RBP11.79□□□□□ -0.52
CLIP1-208ENST00000537004 SLC17A9Q9BYT1 436 aa11.79□□□□□ -0.52
CLIP1-208ENST00000537004 MRPL46Q9H2W6 279 aaKnown RBP11.79□□□□□ -0.52
CLIP1-208ENST00000537004 SLC32A1Q9H598 525 aa11.79□□□□□ -0.52
CLIP1-208ENST00000537004 GPAMQ9HCL2 828 aa11.79□□□□□ -0.52
CLIP1-208ENST00000537004 IGSF5Q9NSI5 407 aa11.79□□□□□ -0.52
CLIP1-208ENST00000537004 KLC4Q9NSK0 619 aa11.79□□□□□ -0.52
CLIP1-208ENST00000537004 CRYL1Q9Y2S2 319 aa11.79□□□□□ -0.52
CLIP1-208ENST00000537004 UPK3BL1B0FP48 263 aa11.78□□□□□ -0.52
CLIP1-208ENST00000537004 UPK3BL2E5RIL1 263 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms