RNA–Protein interactions for RNA: ENST00000531727.5

CPSF1-207, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3 BASIC

Gene CPSF1, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-207ENST00000531727 PLCL1Q15111 1095 aa16.46■□□□□ 0.23
CPSF1-207ENST00000531727 DEFB109BQ30KR1 87 aa16.46■□□□□ 0.23
CPSF1-207ENST00000531727 LARP7Q4G0J3 582 aaKnown RBP eCLIP16.46■□□□□ 0.23
CPSF1-207ENST00000531727 ANKRD20A2Q5SQ80 823 aa16.46■□□□□ 0.23
CPSF1-207ENST00000531727 ANKRD20A1Q5TYW2 823 aa16.46■□□□□ 0.23
CPSF1-207ENST00000531727 ANKRD20A3Q5VUR7 823 aa16.46■□□□□ 0.23
CPSF1-207ENST00000531727 C16orf46Q6P387 395 aa16.46■□□□□ 0.23
CPSF1-207ENST00000531727 RANBP10Q6VN20 620 aa16.46■□□□□ 0.23
CPSF1-207ENST00000531727 DET1Q7L5Y6 550 aa16.46■□□□□ 0.23
CPSF1-207ENST00000531727 PPP1R3BQ86XI6 285 aa16.46■□□□□ 0.23
CPSF1-207ENST00000531727 PTRH1Q86Y79 214 aaKnown RBP16.46■□□□□ 0.23
CPSF1-207ENST00000531727 BEND7Q8N7W2 519 aaPredicted RBP16.46■□□□□ 0.23
CPSF1-207ENST00000531727 OR4K2Q8NGD2 314 aa16.46■□□□□ 0.23
CPSF1-207ENST00000531727 APOBEC4Q8WW27 367 aaKnown RBP16.46■□□□□ 0.23
CPSF1-207ENST00000531727 UBXN4Q92575 508 aa16.46■□□□□ 0.23
CPSF1-207ENST00000531727 ELMO2Q96JJ3 720 aa16.46■□□□□ 0.23
CPSF1-207ENST00000531727 SLC41A2Q96JW4 573 aa16.46■□□□□ 0.23
CPSF1-207ENST00000531727 IMP3Q9NV31 184 aaKnown RBP16.46■□□□□ 0.23
CPSF1-207ENST00000531727 LNPEPQ9UIQ6 1025 aa16.46■□□□□ 0.23
CPSF1-207ENST00000531727 CROTQ9UKG9 612 aa16.46■□□□□ 0.23
CPSF1-207ENST00000531727 AAR2Q9Y312 384 aaKnown RBP16.46■□□□□ 0.23
CPSF1-207ENST00000531727 MRPS18BQ9Y676 258 aaKnown RBP16.46■□□□□ 0.23
CPSF1-207ENST00000531727 MYO18BQ8IUG5 2567 aa16.45■□□□□ 0.22
CPSF1-207ENST00000531727 IGHV5-51A0A0C4DH38 117 aa16.45■□□□□ 0.22
CPSF1-207ENST00000531727 MACROD2A1Z1Q3 448 aa16.45■□□□□ 0.22
CPSF1-207ENST00000531727 KLHL33A6NCF5 533 aa16.45■□□□□ 0.22
CPSF1-207ENST00000531727 MGAT4DA6NG13 374 aa16.45■□□□□ 0.22
CPSF1-207ENST00000531727 SRP72O76094 671 aaKnown RBP16.45■□□□□ 0.22
CPSF1-207ENST00000531727 RBP3P10745 1247 aa16.45■□□□□ 0.22
CPSF1-207ENST00000531727 PSMB4P28070 264 aa16.45■□□□□ 0.22
CPSF1-207ENST00000531727 EIF3EP60228 445 aaKnown RBP16.45■□□□□ 0.22
CPSF1-207ENST00000531727 PRPSAP1Q14558 356 aa16.45■□□□□ 0.22
CPSF1-207ENST00000531727 BCL7AQ4VC05 210 aa16.45■□□□□ 0.22
CPSF1-207ENST00000531727 ATP1A1-AS1Q5TC04 95 aa16.45■□□□□ 0.22
CPSF1-207ENST00000531727 SIDT2Q8NBJ9 832 aaKnown RBP16.45■□□□□ 0.22
CPSF1-207ENST00000531727 OR2L2Q8NH16 312 aa16.45■□□□□ 0.22
CPSF1-207ENST00000531727 C9orf43Q8TAL5 461 aaPredicted RBP16.45■□□□□ 0.22
CPSF1-207ENST00000531727 PANX2Q96RD6 677 aa16.45■□□□□ 0.22
CPSF1-207ENST00000531727 CD180Q99467 661 aa16.45■□□□□ 0.22
CPSF1-207ENST00000531727 APOL2Q9BQE5 337 aa16.45■□□□□ 0.22
CPSF1-207ENST00000531727 OSBPL8Q9BZF1 889 aa16.45■□□□□ 0.22
CPSF1-207ENST00000531727 WWP1Q9H0M0 922 aa16.45■□□□□ 0.22
CPSF1-207ENST00000531727 ASB8Q9H765 288 aa16.45■□□□□ 0.22
CPSF1-207ENST00000531727 PDE7BQ9NP56 450 aa16.45■□□□□ 0.22
CPSF1-207ENST00000531727 FKBPLQ9UIM3 349 aa16.45■□□□□ 0.22
CPSF1-207ENST00000531727 PCDHB3Q9Y5E6 796 aa16.45■□□□□ 0.22
CPSF1-207ENST00000531727 EPN1Q9Y6I3 576 aaPredicted RBP16.45■□□□□ 0.22
CPSF1-207ENST00000531727 CCDC66A2RUB6 948 aa16.44■□□□□ 0.22
CPSF1-207ENST00000531727 RCCD1A6NED2 376 aa16.44■□□□□ 0.22
CPSF1-207ENST00000531727 SOWAHDA6NJG2 315 aa16.44■□□□□ 0.22
CPSF1-207ENST00000531727 KCNN4O15554 427 aa16.44■□□□□ 0.22
CPSF1-207ENST00000531727 STK10O94804 968 aaKnown RBP16.44■□□□□ 0.22
CPSF1-207ENST00000531727 MT-ND3P03897 115 aa16.44■□□□□ 0.22
CPSF1-207ENST00000531727 CCNYL3P0C7X3 344 aa16.44■□□□□ 0.22
CPSF1-207ENST00000531727 CTNNA2P26232 953 aa16.44■□□□□ 0.22
CPSF1-207ENST00000531727 XIAPP98170 497 aa16.44■□□□□ 0.22
CPSF1-207ENST00000531727 PDE1BQ01064 536 aa16.44■□□□□ 0.22
CPSF1-207ENST00000531727 TLE1Q04724 770 aa16.44■□□□□ 0.22
CPSF1-207ENST00000531727 TUBB3Q13509 450 aa16.44■□□□□ 0.22
CPSF1-207ENST00000531727 OLIG2Q13516 323 aa16.44■□□□□ 0.22
CPSF1-207ENST00000531727 DARS2Q6PI48 645 aaKnown RBP16.44■□□□□ 0.22
CPSF1-207ENST00000531727 KMT5CQ86Y97 462 aa16.44■□□□□ 0.22
CPSF1-207ENST00000531727 LINC00615Q96LM1 132 aaPredicted RBP16.44■□□□□ 0.22
CPSF1-207ENST00000531727 C12orf66Q96MD2 445 aa16.44■□□□□ 0.22
CPSF1-207ENST00000531727 SPATA13Q96N96 652 aa16.44■□□□□ 0.22
CPSF1-207ENST00000531727 PPP1R2P1Q96PQ5 205 aa16.44■□□□□ 0.22
CPSF1-207ENST00000531727 INSM2Q96T92 566 aaPredicted RBP16.44■□□□□ 0.22
CPSF1-207ENST00000531727 KCND3Q9UK17 655 aa16.44■□□□□ 0.22
CPSF1-207ENST00000531727 RARRES3Q9UL19 164 aa16.44■□□□□ 0.22
CPSF1-207ENST00000531727 ACSL5Q9ULC5 683 aa16.44■□□□□ 0.22
CPSF1-207ENST00000531727 PADI1Q9ULC6 663 aa16.44■□□□□ 0.22
CPSF1-207ENST00000531727 KCTD3Q9Y597 815 aa16.44■□□□□ 0.22
CPSF1-207ENST00000531727 CFAP20Q9Y6A4 193 aaKnown RBP16.44■□□□□ 0.22
CPSF1-207ENST00000531727 OR5K3A6NET4 321 aa16.43■□□□□ 0.22
CPSF1-207ENST00000531727 TLCD2A6NGC4 264 aa16.43■□□□□ 0.22
CPSF1-207ENST00000531727 AGAP14A8MT82 685 aa16.43■□□□□ 0.22
CPSF1-207ENST00000531727 BTNL10A8MVZ5 291 aa16.43■□□□□ 0.22
CPSF1-207ENST00000531727 SGTAO43765 313 aa16.43■□□□□ 0.22
CPSF1-207ENST00000531727 TIAF1O95411 115 aa16.43■□□□□ 0.22
CPSF1-207ENST00000531727 CRTAMO95727 393 aa16.43■□□□□ 0.22
CPSF1-207ENST00000531727 PYGMP11217 842 aa16.43■□□□□ 0.22
CPSF1-207ENST00000531727 FOLR1P15328 257 aa16.43■□□□□ 0.22
CPSF1-207ENST00000531727 CETN2P41208 172 aa16.43■□□□□ 0.22
CPSF1-207ENST00000531727 RWDD2BP57060 319 aa16.43■□□□□ 0.22
CPSF1-207ENST00000531727 MSLNQ13421 630 aaPredicted RBP16.43■□□□□ 0.22
CPSF1-207ENST00000531727 SEPT6Q14141 434 aa16.43■□□□□ 0.22
CPSF1-207ENST00000531727 KCNAB1Q14722 419 aa16.43■□□□□ 0.22
CPSF1-207ENST00000531727 DNTTIP2Q5QJE6 756 aaKnown RBP16.43■□□□□ 0.22
CPSF1-207ENST00000531727 DUS1LQ6P1R4 473 aaKnown RBP16.43■□□□□ 0.22
CPSF1-207ENST00000531727 CCDC110Q8TBZ0 833 aa16.43■□□□□ 0.22
CPSF1-207ENST00000531727 NAT14Q8WUY8 206 aa16.43■□□□□ 0.22
CPSF1-207ENST00000531727 ZFPM2Q8WW38 1151 aa16.43■□□□□ 0.22
CPSF1-207ENST00000531727 ULK4Q96C45 1275 aa16.43■□□□□ 0.22
CPSF1-207ENST00000531727 ABHD17AQ96GS6 310 aa16.43■□□□□ 0.22
CPSF1-207ENST00000531727 FCRL4Q96PJ5 515 aa16.43■□□□□ 0.22
CPSF1-207ENST00000531727 MAP3K3Q99759 626 aa16.43■□□□□ 0.22
CPSF1-207ENST00000531727 FAM118BQ9BPY3 351 aa16.43■□□□□ 0.22
CPSF1-207ENST00000531727 C19orf43Q9BQ61 176 aa16.43■□□□□ 0.22
CPSF1-207ENST00000531727 HRASLS2Q9NWW9 162 aa16.43■□□□□ 0.22
CPSF1-207ENST00000531727 SLC24A2Q9UI40 661 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms