RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 CEP250Q9BV73 2442 aa4.6□□□□□ -1.67
NUP54-206ENST00000508465 TBC1D3DA0A087WVF3 549 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 TBC1D3IA0A087WXS9 549 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 TBC1D3EA0A087X179 549 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 TBC1D3KA0A087X1G2 549 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 ILVBLA1L0T0 632 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 TBC1D3FA6NER0 549 aaPredicted RBP4.59□□□□□ -1.67
NUP54-206ENST00000508465 TMEM110-MUSTN1A8MSY1 372 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 TBC1D3LB9A6J9 549 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 J3KR12 359 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 KPNA3O00505 521 aaPredicted RBP4.59□□□□□ -1.67
NUP54-206ENST00000508465 BCAT2O15382 392 aaPredicted RBP4.59□□□□□ -1.67
NUP54-206ENST00000508465 BUB1O43683 1085 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 ZNF821O75541 412 aaPredicted RBP4.59□□□□□ -1.67
NUP54-206ENST00000508465 RFPL3O75679 317 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 ZMPSTE24O75844 475 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 CD160O95971 181 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 IGLV3-19P01714 112 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 GYPCP04921 128 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 IGHV4-34P06331 123 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 CTSLP07711 333 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 SERPINF2P08697 491 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 TBC1D3HP0C7X1 549 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 GZMAP12544 262 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 GNSP15586 552 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 GOT1P17174 413 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 EPHB2P29323 1055 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 MIPP30301 263 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 CHRNA3P32297 505 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 DRD3P35462 400 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 PRKCIP41743 596 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 SSR1P43307 286 aaKnown RBP4.59□□□□□ -1.67
NUP54-206ENST00000508465 CXADRP78310 365 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 FAM193AP78312 1265 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 KRT83P78385 493 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 SULT2A1Q06520 285 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 POLD3Q15054 466 aaPredicted RBP4.59□□□□□ -1.67
NUP54-206ENST00000508465 TCEA2Q15560 299 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 ATP13A4Q4VNC1 1196 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 TDRD12Q587J7 1177 aaKnown RBP4.59□□□□□ -1.67
NUP54-206ENST00000508465 PPP6R3Q5H9R7 873 aaPredicted RBP4.59□□□□□ -1.67
NUP54-206ENST00000508465 SPDYCQ5MJ68 293 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 WDR45BQ5MNZ6 344 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 CCDC122Q5T0U0 273 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 FAM182AQ5T1J6 154 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 N4BP2L1Q5TBK1 243 aaPredicted RBP4.59□□□□□ -1.67
NUP54-206ENST00000508465 MANEALQ5VSG8 457 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 TBC1D3GQ6DHY5 549 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 TXNRD3NBQ6F5E7 133 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 TBC1D3CQ6IPX1 549 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 DPY19L3Q6ZPD9 716 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 ZNF788Q6ZQV5 615 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 SETD3Q86TU7 594 aaPredicted RBP4.59□□□□□ -1.67
NUP54-206ENST00000508465 NLRP14Q86W24 1093 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 ZNF354CQ86Y25 554 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 THNSL2Q86YJ6 484 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 TBC1D3Q8IZP1 549 aaPredicted RBP4.59□□□□□ -1.67
NUP54-206ENST00000508465 RYBPQ8N488 228 aaPredicted RBP4.59□□□□□ -1.67
NUP54-206ENST00000508465 ZNF557Q8N988 423 aaPredicted RBP4.59□□□□□ -1.67
NUP54-206ENST00000508465 KDM1BQ8NB78 822 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 DEFB124Q8NES8 71 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 CADM4Q8NFZ8 388 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 OR2A12Q8NGT7 310 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 CEP76Q8TAP6 659 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 SLC35B2Q8TB61 432 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 DNASE2BQ8WZ79 361 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 OR8D1Q8WZ84 308 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 HSPH1Q92598 858 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 SYN2Q92777 582 aaPredicted RBP4.59□□□□□ -1.67
NUP54-206ENST00000508465 ARHGEF2Q92974 986 aaKnown RBP4.59□□□□□ -1.67
NUP54-206ENST00000508465 ARRDC3Q96B67 414 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 TBC1D31Q96DN5 1066 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 HMCESQ96FZ2 354 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 CELF6Q96J87 481 aaKnown RBP4.59□□□□□ -1.67
NUP54-206ENST00000508465 PPP1R9BQ96SB3 815 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 CHP1Q99653 195 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 RTKNQ9BST9 563 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 ACE2Q9BYF1 805 aaPredicted RBP4.59□□□□□ -1.67
NUP54-206ENST00000508465 TM6SF2Q9BZW4 377 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 BTBD1Q9H0C5 482 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 THAP2Q9H0W7 228 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 ISCUQ9H1K1 167 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 ZWILCHQ9H900 591 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 TM9SF3Q9HD45 589 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 TMEM9BQ9NQ34 198 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 ASB6Q9NWX5 421 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 TMPRSS11EQ9UL52 423 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 NEU3Q9UQ49 428 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 CA5BQ9Y2D0 317 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 ZBTB32Q9Y2Y4 487 aaPredicted RBP4.59□□□□□ -1.67
NUP54-206ENST00000508465 MFHAS1Q9Y4C4 1052 aa4.59□□□□□ -1.67
NUP54-206ENST00000508465 SPTBN2O15020 2390 aa4.58□□□□□ -1.68
NUP54-206ENST00000508465 ADAMTS9Q9P2N4 1935 aa4.58□□□□□ -1.68
NUP54-206ENST00000508465 SPAARA0A1B0GVQ0 90 aa4.58□□□□□ -1.68
NUP54-206ENST00000508465 WDR91A4D1P6 747 aa4.58□□□□□ -1.68
NUP54-206ENST00000508465 LRRC72A6NJI9 287 aa4.58□□□□□ -1.68
NUP54-206ENST00000508465 CGB1A6NKQ9 187 aa4.58□□□□□ -1.68
NUP54-206ENST00000508465 CXorf49A8MYA2 514 aaPredicted RBP4.58□□□□□ -1.68
NUP54-206ENST00000508465 RASA4BC9J798 803 aa4.58□□□□□ -1.68
NUP54-206ENST00000508465 EEF2KO00418 725 aaKnown RBP4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms