RNA–Protein interactions for RNA: ENST00000496197.5

PTPN7-218, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,463 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-218	ENST00000496197	PRR23C	Q6ZRP0	262 aa		13.25	□□□□□ -0.29
PTPN7-218	ENST00000496197	VRK3	Q8IV63	474 aa		13.25	□□□□□ -0.29
PTPN7-218	ENST00000496197	SIDT2	Q8NBJ9	832 aa	Known RBP	13.25	□□□□□ -0.29
PTPN7-218	ENST00000496197	OR2L2	Q8NH16	312 aa		13.25	□□□□□ -0.29
PTPN7-218	ENST00000496197	GABPB2	Q8TAK5	448 aa	Predicted RBP	13.25	□□□□□ -0.29
PTPN7-218	ENST00000496197	CD200R1	Q8TD46	325 aa		13.25	□□□□□ -0.29
PTPN7-218	ENST00000496197	SAP25	Q8TEE9	199 aa		13.25	□□□□□ -0.29
PTPN7-218	ENST00000496197	FAM122A	Q96E09	287 aa		13.25	□□□□□ -0.29
PTPN7-218	ENST00000496197	ELMO2	Q96JJ3	720 aa		13.25	□□□□□ -0.29
PTPN7-218	ENST00000496197	ZNF514	Q96K75	400 aa	Predicted RBP	13.25	□□□□□ -0.29
PTPN7-218	ENST00000496197	GPR21	Q99679	349 aa		13.25	□□□□□ -0.29
PTPN7-218	ENST00000496197	GPR22	Q99680	433 aa		13.25	□□□□□ -0.29
PTPN7-218	ENST00000496197	TIMM29	Q9BSF4	260 aa		13.25	□□□□□ -0.29
PTPN7-218	ENST00000496197	CCM2	Q9BSQ5	444 aa		13.25	□□□□□ -0.29
PTPN7-218	ENST00000496197	SARS2	Q9NP81	518 aa	Known RBP	13.25	□□□□□ -0.29
PTPN7-218	ENST00000496197	SPATS2L	Q9NUQ6	558 aa	Known RBP	13.25	□□□□□ -0.29
PTPN7-218	ENST00000496197	EURL	Q9NYK6	297 aa		13.25	□□□□□ -0.29
PTPN7-218	ENST00000496197	PLAA	Q9Y263	795 aa		13.25	□□□□□ -0.29
PTPN7-218	ENST00000496197	VPS9D1	Q9Y2B5	631 aa		13.25	□□□□□ -0.29
PTPN7-218	ENST00000496197	WDR37	Q9Y2I8	494 aa		13.25	□□□□□ -0.29
PTPN7-218	ENST00000496197	ARID1B	Q8NFD5	2236 aa	Predicted RBP	13.25	□□□□□ -0.29
PTPN7-218	ENST00000496197	MGAT4D	A6NG13	374 aa		13.24	□□□□□ -0.29
PTPN7-218	ENST00000496197	PFDN6	O15212	129 aa		13.24	□□□□□ -0.29
PTPN7-218	ENST00000496197	AQP9	O43315	295 aa		13.24	□□□□□ -0.29
PTPN7-218	ENST00000496197	ERLIN1	O75477	346 aa		13.24	□□□□□ -0.29
PTPN7-218	ENST00000496197	CER1	O95813	267 aa		13.24	□□□□□ -0.29
PTPN7-218	ENST00000496197	CTSE	P14091	401 aa		13.24	□□□□□ -0.29
PTPN7-218	ENST00000496197	BRAF	P15056	766 aa		13.24	□□□□□ -0.29
PTPN7-218	ENST00000496197	SAT1	P21673	171 aa		13.24	□□□□□ -0.29
PTPN7-218	ENST00000496197	FDXR	P22570	491 aa		13.24	□□□□□ -0.29
PTPN7-218	ENST00000496197	RPL10	P27635	214 aa	Known RBP	13.24	□□□□□ -0.29
PTPN7-218	ENST00000496197	AOAH	P28039	575 aa		13.24	□□□□□ -0.29
PTPN7-218	ENST00000496197	PDHA2	P29803	388 aa		13.24	□□□□□ -0.29
PTPN7-218	ENST00000496197	ACTR1B	P42025	376 aa		13.24	□□□□□ -0.29
PTPN7-218	ENST00000496197	SLCO1A2	P46721	670 aa		13.24	□□□□□ -0.29
PTPN7-218	ENST00000496197	BLK	P51451	505 aa		13.24	□□□□□ -0.29
PTPN7-218	ENST00000496197	TAS2R39	P59534	338 aa		13.24	□□□□□ -0.29
PTPN7-218	ENST00000496197	ACTR1A	P61163	376 aa		13.24	□□□□□ -0.29
PTPN7-218	ENST00000496197	HNRNPK	P61978	463 aa	Known RBP eCLIP	13.24	□□□□□ -0.29
PTPN7-218	ENST00000496197	DMPK	Q09013	629 aa		13.24	□□□□□ -0.29
PTPN7-218	ENST00000496197	BOP1	Q14137	746 aa	Known RBP	13.24	□□□□□ -0.29
PTPN7-218	ENST00000496197	SEPT7	Q16181	437 aa	Known RBP	13.24	□□□□□ -0.29
PTPN7-218	ENST00000496197	GRTP1	Q5TC63	336 aa		13.24	□□□□□ -0.29
PTPN7-218	ENST00000496197	IL27RA	Q6UWB1	636 aa		13.24	□□□□□ -0.29
PTPN7-218	ENST00000496197	TMEM207	Q6UWW9	146 aa		13.24	□□□□□ -0.29
PTPN7-218	ENST00000496197	CMC1	Q7Z7K0	106 aa		13.24	□□□□□ -0.29
PTPN7-218	ENST00000496197	AMZ2	Q86W34	360 aa		13.24	□□□□□ -0.29
PTPN7-218	ENST00000496197	SPDYE1	Q8NFV5	336 aa	Predicted RBP	13.24	□□□□□ -0.29
PTPN7-218	ENST00000496197	PATE1	Q8WXA2	126 aa		13.24	□□□□□ -0.29
PTPN7-218	ENST00000496197	ELMO1	Q92556	727 aa		13.24	□□□□□ -0.29
PTPN7-218	ENST00000496197	KCNJ9	Q92806	393 aa		13.24	□□□□□ -0.29
PTPN7-218	ENST00000496197	EDEM2	Q9BV94	578 aa		13.24	□□□□□ -0.29
PTPN7-218	ENST00000496197	ZDHHC5	Q9C0B5	715 aa		13.24	□□□□□ -0.29
PTPN7-218	ENST00000496197	OSGEPL1	Q9H4B0	414 aa		13.24	□□□□□ -0.29
PTPN7-218	ENST00000496197	COG4	Q9H9E3	785 aa		13.24	□□□□□ -0.29
PTPN7-218	ENST00000496197	PRDM8	Q9NQV8	689 aa		13.24	□□□□□ -0.29
PTPN7-218	ENST00000496197	SCHIP1	Q9P0W5	487 aa	Predicted RBP	13.24	□□□□□ -0.29
PTPN7-218	ENST00000496197	TBC1D29	Q9UFV1	150 aa		13.24	□□□□□ -0.29
PTPN7-218	ENST00000496197	TSR3	Q9UJK0	312 aa	Known RBP	13.24	□□□□□ -0.29
PTPN7-218	ENST00000496197	WDR87	Q6ZQQ6	2873 aa		13.24	□□□□□ -0.29
PTPN7-218	ENST00000496197	CABIN1	Q9Y6J0	2220 aa		13.24	□□□□□ -0.29
PTPN7-218	ENST00000496197	SLC5A10	A0PJK1	596 aa		13.23	□□□□□ -0.29
PTPN7-218	ENST00000496197		A6NCN8	305 aa		13.23	□□□□□ -0.29
PTPN7-218	ENST00000496197	SMIM23	A6NLE4	172 aa		13.23	□□□□□ -0.29
PTPN7-218	ENST00000496197		H3BM21	787 aa		13.23	□□□□□ -0.29
PTPN7-218	ENST00000496197	YY2	O15391	372 aa		13.23	□□□□□ -0.29
PTPN7-218	ENST00000496197	LRP3	O75074	770 aa		13.23	□□□□□ -0.29
PTPN7-218	ENST00000496197	WISP3	O95389	354 aa	Predicted RBP	13.23	□□□□□ -0.29
PTPN7-218	ENST00000496197	FTH1	P02794	183 aa		13.23	□□□□□ -0.29
PTPN7-218	ENST00000496197	CHRM3	P20309	590 aa		13.23	□□□□□ -0.29
PTPN7-218	ENST00000496197	SPR	P35270	261 aa	Predicted RBP	13.23	□□□□□ -0.29
PTPN7-218	ENST00000496197	MSH2	P43246	934 aa		13.23	□□□□□ -0.29
PTPN7-218	ENST00000496197	ARRB1	P49407	418 aa	Predicted RBP	13.23	□□□□□ -0.29
PTPN7-218	ENST00000496197	CSRP3	P50461	194 aa		13.23	□□□□□ -0.29
PTPN7-218	ENST00000496197	CCT8	P50990	548 aa		13.23	□□□□□ -0.29
PTPN7-218	ENST00000496197	LRP8	Q14114	963 aa		13.23	□□□□□ -0.29
PTPN7-218	ENST00000496197	GBX1	Q14549	363 aa		13.23	□□□□□ -0.29
PTPN7-218	ENST00000496197	DEFB133	Q30KQ1	61 aa		13.23	□□□□□ -0.29
PTPN7-218	ENST00000496197	MROH9	Q5TGP6	573 aa		13.23	□□□□□ -0.29
PTPN7-218	ENST00000496197	FAM45BP	Q6NSW5	357 aa		13.23	□□□□□ -0.29
PTPN7-218	ENST00000496197	ADGRD1	Q6QNK2	874 aa		13.23	□□□□□ -0.29
PTPN7-218	ENST00000496197	TAF8	Q7Z7C8	310 aa		13.23	□□□□□ -0.29
PTPN7-218	ENST00000496197	CFAP206	Q8IYR0	622 aa		13.23	□□□□□ -0.29
PTPN7-218	ENST00000496197	IQCK	Q8N0W5	287 aa		13.23	□□□□□ -0.29
PTPN7-218	ENST00000496197	CYP4X1	Q8N118	509 aa		13.23	□□□□□ -0.29
PTPN7-218	ENST00000496197	FAM45A	Q8TCE6	357 aa		13.23	□□□□□ -0.29
PTPN7-218	ENST00000496197	HM13	Q8TCT9	377 aa		13.23	□□□□□ -0.29
PTPN7-218	ENST00000496197	MZB1	Q8WU39	189 aa		13.23	□□□□□ -0.29
PTPN7-218	ENST00000496197	ZIM3	Q96PE6	472 aa		13.23	□□□□□ -0.29
PTPN7-218	ENST00000496197	LATS2	Q9NRM7	1088 aa		13.23	□□□□□ -0.29
PTPN7-218	ENST00000496197	TAAR2	Q9P1P5	351 aa		13.23	□□□□□ -0.29
PTPN7-218	ENST00000496197	TXNDC16	Q9P2K2	825 aa		13.23	□□□□□ -0.29
PTPN7-218	ENST00000496197	SPAST	Q9UBP0	616 aa		13.23	□□□□□ -0.29
PTPN7-218	ENST00000496197	TBK1	Q9UHD2	729 aa		13.23	□□□□□ -0.29
PTPN7-218	ENST00000496197	SLC39A10	Q9ULF5	831 aa		13.23	□□□□□ -0.29
PTPN7-218	ENST00000496197	CORO1C	Q9ULV4	474 aa	Predicted RBP	13.23	□□□□□ -0.29
PTPN7-218	ENST00000496197	PSMD13	Q9UNM6	376 aa		13.23	□□□□□ -0.29
PTPN7-218	ENST00000496197	VWA7	Q9Y334	891 aa		13.23	□□□□□ -0.29
PTPN7-218	ENST00000496197	DNMT3A	Q9Y6K1	912 aa	Predicted RBP	13.23	□□□□□ -0.29
PTPN7-218	ENST00000496197	C17orf113	A0A1B0GUU1	675 aa		13.23	□□□□□ -0.29

Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms