RNA–Protein interactions for RNA: ENST00000494047.5

RFC4-214, Transcript of replication factor C subunit 4, humanhuman

TSL 2

Gene RFC4, Length 1,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-214ENST00000494047 UBTD2Q8WUN7 234 aa11.34□□□□□ -0.59
RFC4-214ENST00000494047 EXT2Q93063 718 aa11.34□□□□□ -0.59
RFC4-214ENST00000494047 IGSF8Q969P0 613 aa11.34□□□□□ -0.59
RFC4-214ENST00000494047 ISOC1Q96CN7 298 aa11.34□□□□□ -0.59
RFC4-214ENST00000494047 C3orf30Q96M34 536 aa11.34□□□□□ -0.59
RFC4-214ENST00000494047 SLC29A1Q99808 456 aa11.34□□□□□ -0.59
RFC4-214ENST00000494047 C1orf50Q9BV19 199 aa11.34□□□□□ -0.59
RFC4-214ENST00000494047 TTYH1Q9H313 450 aaPredicted RBP11.34□□□□□ -0.59
RFC4-214ENST00000494047 SLC52A3Q9NQ40 469 aa11.34□□□□□ -0.59
RFC4-214ENST00000494047 USE1Q9NZ43 259 aa11.34□□□□□ -0.59
RFC4-214ENST00000494047 C3orf18Q9UK00 162 aa11.34□□□□□ -0.59
RFC4-214ENST00000494047 OAZ3Q9UMX2 235 aa11.34□□□□□ -0.59
RFC4-214ENST00000494047 ARL5AQ9Y689 179 aa11.34□□□□□ -0.59
RFC4-214ENST00000494047 SLC30A1Q9Y6M5 507 aa11.34□□□□□ -0.59
RFC4-214ENST00000494047 LAMA2P24043 3122 aaKnown RBP11.33□□□□□ -0.59
RFC4-214ENST00000494047 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP11.33□□□□□ -0.6
RFC4-214ENST00000494047 SH3PXD2BA1X283 911 aa11.33□□□□□ -0.6
RFC4-214ENST00000494047 GRXCR1A8MXD5 290 aa11.33□□□□□ -0.6
RFC4-214ENST00000494047 TBC1D4O60343 1298 aa11.33□□□□□ -0.6
RFC4-214ENST00000494047 MGEA5O60502 916 aa11.33□□□□□ -0.6
RFC4-214ENST00000494047 RECQL5O94762 991 aaPredicted RBP11.33□□□□□ -0.6
RFC4-214ENST00000494047 GLUD1P00367 558 aa11.33□□□□□ -0.6
RFC4-214ENST00000494047 RETP07949 1114 aa11.33□□□□□ -0.6
RFC4-214ENST00000494047 F7P08709 466 aaPredicted RBP11.33□□□□□ -0.6
RFC4-214ENST00000494047 FGFR3P22607 806 aa11.33□□□□□ -0.6
RFC4-214ENST00000494047 DGKAP23743 735 aa11.33□□□□□ -0.6
RFC4-214ENST00000494047 HOXD9P28356 352 aaPredicted RBP11.33□□□□□ -0.6
RFC4-214ENST00000494047 OR1G1P47890 313 aa11.33□□□□□ -0.6
RFC4-214ENST00000494047 RXRGP48443 463 aa11.33□□□□□ -0.6
RFC4-214ENST00000494047 AFF1P51825 1210 aaKnown RBP11.33□□□□□ -0.6
RFC4-214ENST00000494047 RABGGTBP53611 331 aa11.33□□□□□ -0.6
RFC4-214ENST00000494047 CDH13P55290 713 aa11.33□□□□□ -0.6
RFC4-214ENST00000494047 TAF10Q12962 218 aa11.33□□□□□ -0.6
RFC4-214ENST00000494047 DAG1Q14118 895 aa11.33□□□□□ -0.6
RFC4-214ENST00000494047 CBX2Q14781 532 aaPredicted RBP11.33□□□□□ -0.6
RFC4-214ENST00000494047 TSNQ15631 228 aaKnown RBP11.33□□□□□ -0.6
RFC4-214ENST00000494047 DPY19L1Q2PZI1 675 aa11.33□□□□□ -0.6
RFC4-214ENST00000494047 C6orf136Q5SQH8 315 aa11.33□□□□□ -0.6
RFC4-214ENST00000494047 ZDHHC20Q5W0Z9 365 aa11.33□□□□□ -0.6
RFC4-214ENST00000494047 ZDHHC13Q8IUH4 622 aa11.33□□□□□ -0.6
RFC4-214ENST00000494047 ADHFE1Q8IWW8 467 aa11.33□□□□□ -0.6
RFC4-214ENST00000494047 RBFAQ8N0V3 343 aa11.33□□□□□ -0.6
RFC4-214ENST00000494047 LGI2Q8N0V4 545 aa11.33□□□□□ -0.6
RFC4-214ENST00000494047 ELMOD1Q8N336 334 aa11.33□□□□□ -0.6
RFC4-214ENST00000494047 OR4K2Q8NGD2 314 aa11.33□□□□□ -0.6
RFC4-214ENST00000494047 OR13C4Q8NGS5 318 aa11.33□□□□□ -0.6
RFC4-214ENST00000494047 ITFG1Q8TB96 612 aa11.33□□□□□ -0.6
RFC4-214ENST00000494047 BPIFB1Q8TDL5 484 aa11.33□□□□□ -0.6
RFC4-214ENST00000494047 CYGBQ8WWM9 190 aa11.33□□□□□ -0.6
RFC4-214ENST00000494047 STARD8Q92502 1023 aa11.33□□□□□ -0.6
RFC4-214ENST00000494047 HDAC2Q92769 488 aaKnown RBP11.33□□□□□ -0.6
RFC4-214ENST00000494047 TBC1D20Q96BZ9 403 aa11.33□□□□□ -0.6
RFC4-214ENST00000494047 THAP11Q96EK4 314 aa11.33□□□□□ -0.6
RFC4-214ENST00000494047 GUCD1Q96NT3 240 aa11.33□□□□□ -0.6
RFC4-214ENST00000494047 GAS2L1Q99501 681 aaPredicted RBP11.33□□□□□ -0.6
RFC4-214ENST00000494047 CDX2Q99626 313 aaPredicted RBP11.33□□□□□ -0.6
RFC4-214ENST00000494047 RAD9AQ99638 391 aa11.33□□□□□ -0.6
RFC4-214ENST00000494047 GPR21Q99679 349 aa11.33□□□□□ -0.6
RFC4-214ENST00000494047 RBM4BQ9BQ04 359 aaKnown RBP11.33□□□□□ -0.6
RFC4-214ENST00000494047 ZBED2Q9BTP6 218 aa11.33□□□□□ -0.6
RFC4-214ENST00000494047 RBM4Q9BWF3 364 aaKnown RBP11.33□□□□□ -0.6
RFC4-214ENST00000494047 ING2Q9H160 280 aa11.33□□□□□ -0.6
RFC4-214ENST00000494047 RMND5AQ9H871 391 aa11.33□□□□□ -0.6
RFC4-214ENST00000494047 RDH14Q9HBH5 336 aa11.33□□□□□ -0.6
RFC4-214ENST00000494047 FBRSL1Q9HCM7 1045 aaKnown RBP11.33□□□□□ -0.6
RFC4-214ENST00000494047 TNFRSF12AQ9NP84 129 aa11.33□□□□□ -0.6
RFC4-214ENST00000494047 SEMA4BQ9NPR2 832 aaPredicted RBP11.33□□□□□ -0.6
RFC4-214ENST00000494047 IFT80Q9P2H3 777 aaPredicted RBP11.33□□□□□ -0.6
RFC4-214ENST00000494047 DNAJB9Q9UBS3 223 aa11.33□□□□□ -0.6
RFC4-214ENST00000494047 TRPS1Q9UHF7 1281 aa11.33□□□□□ -0.6
RFC4-214ENST00000494047 AGO1Q9UL18 857 aaKnown RBP11.33□□□□□ -0.6
RFC4-214ENST00000494047 DHRS7Q9Y394 339 aa11.33□□□□□ -0.6
RFC4-214ENST00000494047 TMED5Q9Y3A6 229 aa11.33□□□□□ -0.6
RFC4-214ENST00000494047 HSPE1-MOB4S4R3N1 261 aa11.33□□□□□ -0.6
RFC4-214ENST00000494047 MTMR11A4FU01 709 aa11.32□□□□□ -0.6
RFC4-214ENST00000494047 ANKRD66B4E2M5 251 aa11.32□□□□□ -0.6
RFC4-214ENST00000494047 H3BSA7 217 aa11.32□□□□□ -0.6
RFC4-214ENST00000494047 E2F3O00716 465 aa11.32□□□□□ -0.6
RFC4-214ENST00000494047 TLL1O43897 1013 aa11.32□□□□□ -0.6
RFC4-214ENST00000494047 SIX3O95343 332 aaPredicted RBP11.32□□□□□ -0.6
RFC4-214ENST00000494047 GJB5O95377 273 aa11.32□□□□□ -0.6
RFC4-214ENST00000494047 LINC00032P0C843 101 aa11.32□□□□□ -0.6
RFC4-214ENST00000494047 CKMT2P17540 419 aa11.32□□□□□ -0.6
RFC4-214ENST00000494047 GGT1P19440 569 aa11.32□□□□□ -0.6
RFC4-214ENST00000494047 VARSP26640 1264 aaKnown RBP11.32□□□□□ -0.6
RFC4-214ENST00000494047 FMO4P31512 558 aa11.32□□□□□ -0.6
RFC4-214ENST00000494047 MC4RP32245 332 aa11.32□□□□□ -0.6
RFC4-214ENST00000494047 PBX2P40425 430 aa11.32□□□□□ -0.6
RFC4-214ENST00000494047 SCNN1BP51168 640 aa11.32□□□□□ -0.6
RFC4-214ENST00000494047 ATXN3P54252 364 aaPredicted RBP11.32□□□□□ -0.6
RFC4-214ENST00000494047 RAD23AP54725 363 aa11.32□□□□□ -0.6
RFC4-214ENST00000494047 ARSFP54793 590 aa11.32□□□□□ -0.6
RFC4-214ENST00000494047 TIAL1Q01085 375 aaKnown RBP eCLIP11.32□□□□□ -0.6
RFC4-214ENST00000494047 ABRQ12979 859 aa11.32□□□□□ -0.6
RFC4-214ENST00000494047 GALNT3Q14435 633 aa11.32□□□□□ -0.6
RFC4-214ENST00000494047 GRB7Q14451 532 aa11.32□□□□□ -0.6
RFC4-214ENST00000494047 TGFBIQ15582 683 aa11.32□□□□□ -0.6
RFC4-214ENST00000494047 DDR2Q16832 855 aa11.32□□□□□ -0.6
RFC4-214ENST00000494047 ZNF829Q3KNS6 432 aaPredicted RBP11.32□□□□□ -0.6
RFC4-214ENST00000494047 GPR33Q49SQ1 333 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms