RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 ST6GALNAC4Q9H4F1 302 aa4.03□□□□□ -1.76
PTCD3-216ENST00000487043 DNAJC18Q9H819 358 aa4.03□□□□□ -1.76
PTCD3-216ENST00000487043 UPF2Q9HAU5 1272 aaKnown RBP4.03□□□□□ -1.76
PTCD3-216ENST00000487043 MKKSQ9NPJ1 570 aaPredicted RBP4.03□□□□□ -1.76
PTCD3-216ENST00000487043 SELENONQ9NZV5 590 aa4.03□□□□□ -1.76
PTCD3-216ENST00000487043 COG5Q9UP83 839 aa4.03□□□□□ -1.76
PTCD3-216ENST00000487043 ATP6V0A2Q9Y487 856 aa4.03□□□□□ -1.76
PTCD3-216ENST00000487043 STON1Q9Y6Q2 735 aa4.03□□□□□ -1.76
PTCD3-216ENST00000487043 CASZ1Q86V15 1759 aa4.03□□□□□ -1.76
PTCD3-216ENST00000487043 TNRC6CQ9HCJ0 1690 aaKnown RBP4.03□□□□□ -1.76
PTCD3-216ENST00000487043 ANKRD31Q8N7Z5 1873 aa4.03□□□□□ -1.77
PTCD3-216ENST00000487043 ZNF804BA4D1E1 1349 aa4.02□□□□□ -1.77
PTCD3-216ENST00000487043 ZC3H11AO75152 810 aaKnown RBP eCLIP4.02□□□□□ -1.77
PTCD3-216ENST00000487043 RSL1D1O76021 490 aaKnown RBP4.02□□□□□ -1.77
PTCD3-216ENST00000487043 REC8O95072 547 aa4.02□□□□□ -1.77
PTCD3-216ENST00000487043 ZWINTO95229 277 aa4.02□□□□□ -1.77
PTCD3-216ENST00000487043 KCNK5O95279 499 aa4.02□□□□□ -1.77
PTCD3-216ENST00000487043 LATS1O95835 1130 aa4.02□□□□□ -1.77
PTCD3-216ENST00000487043 ICAM1P05362 532 aa4.02□□□□□ -1.77
PTCD3-216ENST00000487043 CCDC175P0C221 793 aa4.02□□□□□ -1.77
PTCD3-216ENST00000487043 CD58P19256 250 aa4.02□□□□□ -1.77
PTCD3-216ENST00000487043 FBLP22087 321 aaKnown RBP4.02□□□□□ -1.77
PTCD3-216ENST00000487043 CERS1P27544 350 aa4.02□□□□□ -1.77
PTCD3-216ENST00000487043 MC5RP33032 325 aa4.02□□□□□ -1.77
PTCD3-216ENST00000487043 EIF2S3P41091 472 aaKnown RBP4.02□□□□□ -1.77
PTCD3-216ENST00000487043 KCNJ4P48050 445 aa4.02□□□□□ -1.77
PTCD3-216ENST00000487043 METAP2P50579 478 aaKnown RBP eCLIP4.02□□□□□ -1.77
PTCD3-216ENST00000487043 CCR3P51677 355 aa4.02□□□□□ -1.77
PTCD3-216ENST00000487043 CSE1LP55060 971 aaKnown RBP4.02□□□□□ -1.77
PTCD3-216ENST00000487043 ELLP55199 621 aaPredicted RBP4.02□□□□□ -1.77
PTCD3-216ENST00000487043 KRT83P78385 493 aa4.02□□□□□ -1.77
PTCD3-216ENST00000487043 CXCL9Q07325 125 aa4.02□□□□□ -1.77
PTCD3-216ENST00000487043 KRT33BQ14525 404 aa4.02□□□□□ -1.77
PTCD3-216ENST00000487043 INPP5JQ15735 1006 aaPredicted RBP4.02□□□□□ -1.77
PTCD3-216ENST00000487043 EIF2S3LQ2VIR3 472 aaKnown RBP4.02□□□□□ -1.77
PTCD3-216ENST00000487043 STRIP1Q5VSL9 837 aa4.02□□□□□ -1.77
PTCD3-216ENST00000487043 GGNBP1Q5YKI7 109 aa4.02□□□□□ -1.77
PTCD3-216ENST00000487043 SLC16A12Q6ZSM3 486 aa4.02□□□□□ -1.77
PTCD3-216ENST00000487043 C15orf52Q6ZUT6 534 aaKnown RBP4.02□□□□□ -1.77
PTCD3-216ENST00000487043 TAOK1Q7L7X3 1001 aa4.02□□□□□ -1.77
PTCD3-216ENST00000487043 CAMKMTQ7Z624 323 aa4.02□□□□□ -1.77
PTCD3-216ENST00000487043 SNX32Q86XE0 403 aa4.02□□□□□ -1.77
PTCD3-216ENST00000487043 ANKRD13BQ86YJ7 626 aa4.02□□□□□ -1.77
PTCD3-216ENST00000487043 EPHX4Q8IUS5 362 aa4.02□□□□□ -1.77
PTCD3-216ENST00000487043 MCEMP1Q8IX19 187 aa4.02□□□□□ -1.77
PTCD3-216ENST00000487043 KBTBD3Q8NAB2 608 aa4.02□□□□□ -1.77
PTCD3-216ENST00000487043 ENGASEQ8NFI3 743 aa4.02□□□□□ -1.77
PTCD3-216ENST00000487043 TEKT4Q8WW24 435 aa4.02□□□□□ -1.77
PTCD3-216ENST00000487043 LPGAT1Q92604 370 aa4.02□□□□□ -1.77
PTCD3-216ENST00000487043 DPF1Q92782 380 aa4.02□□□□□ -1.77
PTCD3-216ENST00000487043 ZFYVE19Q96K21 471 aa4.02□□□□□ -1.77
PTCD3-216ENST00000487043 FAM84BQ96KN1 310 aaPredicted RBP4.02□□□□□ -1.77
PTCD3-216ENST00000487043 FER1L6-AS2Q96M78 137 aa4.02□□□□□ -1.77
PTCD3-216ENST00000487043 NAA11Q9BSU3 229 aaPredicted RBP4.02□□□□□ -1.77
PTCD3-216ENST00000487043 DESI2Q9BSY9 194 aa4.02□□□□□ -1.77
PTCD3-216ENST00000487043 FSD1Q9BTV5 496 aa4.02□□□□□ -1.77
PTCD3-216ENST00000487043 GOLPH3LQ9H4A5 285 aa4.02□□□□□ -1.77
PTCD3-216ENST00000487043 PPP1R3EQ9H7J1 279 aa4.02□□□□□ -1.77
PTCD3-216ENST00000487043 EPB41L5Q9HCM4 733 aa4.02□□□□□ -1.77
PTCD3-216ENST00000487043 ACSS1Q9NUB1 689 aaPredicted RBP4.02□□□□□ -1.77
PTCD3-216ENST00000487043 GDE1Q9NZC3 331 aa4.02□□□□□ -1.77
PTCD3-216ENST00000487043 HMG20BQ9P0W2 317 aa4.02□□□□□ -1.77
PTCD3-216ENST00000487043 SLC9A2Q9UBY0 812 aa4.02□□□□□ -1.77
PTCD3-216ENST00000487043 OR14J1Q9UGF5 321 aa4.02□□□□□ -1.77
PTCD3-216ENST00000487043 GTF3C4Q9UKN8 822 aa4.02□□□□□ -1.77
PTCD3-216ENST00000487043 ZNF148Q9UQR1 794 aa4.02□□□□□ -1.77
PTCD3-216ENST00000487043 RFX7Q2KHR2 1363 aa4.02□□□□□ -1.77
PTCD3-216ENST00000487043 SPEF2Q9C093 1822 aa4.01□□□□□ -1.77
PTCD3-216ENST00000487043 TCRBV21S2A2A0A5A6 115 aa4.01□□□□□ -1.77
PTCD3-216ENST00000487043 CPED1A4D0V7 1026 aa4.01□□□□□ -1.77
PTCD3-216ENST00000487043 ZNF814B7Z6K7 855 aa4.01□□□□□ -1.77
PTCD3-216ENST00000487043 RNF113AO15541 343 aaKnown RBP4.01□□□□□ -1.77
PTCD3-216ENST00000487043 TLX3O43711 291 aaPredicted RBP4.01□□□□□ -1.77
PTCD3-216ENST00000487043 TLR2O60603 784 aa4.01□□□□□ -1.77
PTCD3-216ENST00000487043 C22orf31O95567 290 aa4.01□□□□□ -1.77
PTCD3-216ENST00000487043 ZFYP08048 801 aaPredicted RBP4.01□□□□□ -1.77
PTCD3-216ENST00000487043 FDPSP14324 419 aaKnown RBP4.01□□□□□ -1.77
PTCD3-216ENST00000487043 IFNAR1P17181 557 aa4.01□□□□□ -1.77
PTCD3-216ENST00000487043 OAS2P29728 719 aaKnown RBP4.01□□□□□ -1.77
PTCD3-216ENST00000487043 GYG1P46976 350 aa4.01□□□□□ -1.77
PTCD3-216ENST00000487043 MMP14P50281 582 aa4.01□□□□□ -1.77
PTCD3-216ENST00000487043 P2RX3P56373 397 aa4.01□□□□□ -1.77
PTCD3-216ENST00000487043 RBP5P82980 135 aa4.01□□□□□ -1.77
PTCD3-216ENST00000487043 PPP2R2BQ00005 443 aa4.01□□□□□ -1.77
PTCD3-216ENST00000487043 SREBF2Q12772 1141 aa4.01□□□□□ -1.77
PTCD3-216ENST00000487043 ASIC2Q16515 512 aa4.01□□□□□ -1.77
PTCD3-216ENST00000487043 SNAPC1Q16533 368 aa4.01□□□□□ -1.77
PTCD3-216ENST00000487043 DUSP6Q16828 381 aa4.01□□□□□ -1.77
PTCD3-216ENST00000487043 C6orf163Q5TEZ5 329 aa4.01□□□□□ -1.77
PTCD3-216ENST00000487043 DAB2IPQ5VWQ8 1189 aa4.01□□□□□ -1.77
PTCD3-216ENST00000487043 ZSCAN25Q6NSZ9 544 aa4.01□□□□□ -1.77
PTCD3-216ENST00000487043 SLC18B1Q6NT16 456 aa4.01□□□□□ -1.77
PTCD3-216ENST00000487043 METTL2BQ6P1Q9 378 aaKnown RBP4.01□□□□□ -1.77
PTCD3-216ENST00000487043 DCLRE1AQ6PJP8 1040 aa4.01□□□□□ -1.77
PTCD3-216ENST00000487043 CWC27Q6UX04 472 aaKnown RBP4.01□□□□□ -1.77
PTCD3-216ENST00000487043 MFSD6Q6ZSS7 791 aa4.01□□□□□ -1.77
PTCD3-216ENST00000487043 PATL1Q86TB9 770 aaKnown RBP4.01□□□□□ -1.77
PTCD3-216ENST00000487043 CCDC190Q86UF4 302 aa4.01□□□□□ -1.77
PTCD3-216ENST00000487043 TC2NQ8N9U0 490 aa4.01□□□□□ -1.77
PTCD3-216ENST00000487043 KIF18AQ8NI77 898 aa4.01□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms