RNA–Protein interactions for RNA: ENST00000476215.5

PTCD3-211, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 754 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-211ENST00000476215 NUCB1Q02818 461 aa4.73□□□□□ -1.65
PTCD3-211ENST00000476215 GAGE2BQ13066 116 aa4.73□□□□□ -1.65
PTCD3-211ENST00000476215 ZNF718Q3SXZ3 478 aa4.73□□□□□ -1.65
PTCD3-211ENST00000476215 ZNF672Q499Z4 452 aaPredicted RBP4.73□□□□□ -1.65
PTCD3-211ENST00000476215 GAGE2EQ4V326 116 aa4.73□□□□□ -1.65
PTCD3-211ENST00000476215 GARNL3Q5VVW2 1013 aa4.73□□□□□ -1.65
PTCD3-211ENST00000476215 GPR139Q6DWJ6 353 aa4.73□□□□□ -1.65
PTCD3-211ENST00000476215 DHRS7BQ6IAN0 325 aaPredicted RBP4.73□□□□□ -1.65
PTCD3-211ENST00000476215 GAGE2AQ6NT46 116 aa4.73□□□□□ -1.65
PTCD3-211ENST00000476215 FOXL2NBQ6ZUU3 175 aa4.73□□□□□ -1.65
PTCD3-211ENST00000476215 ADGRA1Q86SQ6 560 aa4.73□□□□□ -1.65
PTCD3-211ENST00000476215 MINDY1Q8N5J2 469 aa4.73□□□□□ -1.65
PTCD3-211ENST00000476215 RFLNBQ8N5W9 214 aa4.73□□□□□ -1.65
PTCD3-211ENST00000476215 SYT2Q8N9I0 419 aaPredicted RBP4.73□□□□□ -1.65
PTCD3-211ENST00000476215 KBTBD3Q8NAB2 608 aa4.73□□□□□ -1.65
PTCD3-211ENST00000476215 RBM15BQ8NDT2 890 aaKnown RBP4.73□□□□□ -1.65
PTCD3-211ENST00000476215 RDM1Q8NG50 284 aa4.73□□□□□ -1.65
PTCD3-211ENST00000476215 OR13A1Q8NGR1 328 aa4.73□□□□□ -1.65
PTCD3-211ENST00000476215 SEMA4DQ92854 862 aa4.73□□□□□ -1.65
PTCD3-211ENST00000476215 ZNF622Q969S3 477 aaKnown RBP eCLIP4.73□□□□□ -1.653e-8■■□□□ 14.5
PTCD3-211ENST00000476215 SLF1Q9BQI6 1058 aa4.73□□□□□ -1.65
PTCD3-211ENST00000476215 LRRC1Q9BTT6 524 aa4.73□□□□□ -1.65
PTCD3-211ENST00000476215 MMP27Q9H306 513 aa4.73□□□□□ -1.65
PTCD3-211ENST00000476215 DONSONQ9NYP3 566 aa4.73□□□□□ -1.65
PTCD3-211ENST00000476215 GAGE2DQ9UEU5 116 aa4.73□□□□□ -1.65
PTCD3-211ENST00000476215 TTLL3Q9Y4R7 772 aa4.73□□□□□ -1.65
PTCD3-211ENST00000476215 CECR2Q9BXF3 1484 aa4.73□□□□□ -1.65
PTCD3-211ENST00000476215 GPR75-ASB3A0A0A6YYF3 556 aa4.72□□□□□ -1.65
PTCD3-211ENST00000476215 MAGEB17A8MXT2 336 aa4.72□□□□□ -1.65
PTCD3-211ENST00000476215 DVL1O14640 695 aa4.72□□□□□ -1.65
PTCD3-211ENST00000476215 CAPN9O14815 690 aa4.72□□□□□ -1.65
PTCD3-211ENST00000476215 F7P08709 466 aaPredicted RBP4.72□□□□□ -1.65
PTCD3-211ENST00000476215 ZNF23P17027 643 aa4.72□□□□□ -1.65
PTCD3-211ENST00000476215 MT3P25713 68 aa4.72□□□□□ -1.65
PTCD3-211ENST00000476215 DVL1P1P54792 670 aaPredicted RBP4.72□□□□□ -1.65
PTCD3-211ENST00000476215 PITX1P78337 314 aaPredicted RBP4.72□□□□□ -1.65
PTCD3-211ENST00000476215 CALD1Q05682 793 aaKnown RBP4.72□□□□□ -1.65
PTCD3-211ENST00000476215 ILF3Q12906 894 aaKnown RBP eCLIP4.72□□□□□ -1.657e-7■■■■□ 23.9
PTCD3-211ENST00000476215 PLA2G7Q13093 441 aa4.72□□□□□ -1.65
PTCD3-211ENST00000476215 BAATQ14032 418 aaPredicted RBP4.72□□□□□ -1.65
PTCD3-211ENST00000476215 MELKQ14680 651 aa4.72□□□□□ -1.65
PTCD3-211ENST00000476215 KCTD2Q14681 263 aa4.72□□□□□ -1.65
PTCD3-211ENST00000476215 SIRPB2Q5JXA9 342 aa4.72□□□□□ -1.65
PTCD3-211ENST00000476215 PDSS1Q5T2R2 415 aa4.72□□□□□ -1.65
PTCD3-211ENST00000476215 PLXDC2Q6UX71 529 aa4.72□□□□□ -1.65
PTCD3-211ENST00000476215 C9orf139Q6ZV77 190 aa4.72□□□□□ -1.65
PTCD3-211ENST00000476215 GUF1Q8N442 669 aaKnown RBP4.72□□□□□ -1.65
PTCD3-211ENST00000476215 FBXO39Q8N4B4 442 aa4.72□□□□□ -1.65
PTCD3-211ENST00000476215 AVL9Q8NBF6 648 aa4.72□□□□□ -1.65
PTCD3-211ENST00000476215 WDR20Q8TBZ3 569 aa4.72□□□□□ -1.65
PTCD3-211ENST00000476215 LPGAT1Q92604 370 aa4.72□□□□□ -1.65
PTCD3-211ENST00000476215 TMCO6Q96DC7 493 aa4.72□□□□□ -1.65
PTCD3-211ENST00000476215 ABHD8Q96I13 439 aa4.72□□□□□ -1.65
PTCD3-211ENST00000476215 SLC22A12Q96S37 553 aa4.72□□□□□ -1.65
PTCD3-211ENST00000476215 MRPL1Q9BYD6 325 aaKnown RBP4.72□□□□□ -1.65
PTCD3-211ENST00000476215 MORF4L1Q9UBU8 362 aa4.72□□□□□ -1.65
PTCD3-211ENST00000476215 FAM169AQ9Y6X4 670 aa4.72□□□□□ -1.65
PTCD3-211ENST00000476215 hCG_1809904A0A1W2PP81 198 aa4.71□□□□□ -1.66
PTCD3-211ENST00000476215 A0A1W2PPE2 198 aa4.71□□□□□ -1.66
PTCD3-211ENST00000476215 A0A1W2PR64 198 aa4.71□□□□□ -1.66
PTCD3-211ENST00000476215 CTAGE9A4FU28 777 aa4.71□□□□□ -1.66
PTCD3-211ENST00000476215 C5orf60A6NFR6 353 aa4.71□□□□□ -1.66
PTCD3-211ENST00000476215 P4HA2O15460 535 aa4.71□□□□□ -1.66
PTCD3-211ENST00000476215 KRT86O43790 486 aa4.71□□□□□ -1.66
PTCD3-211ENST00000476215 SSX4O60224 188 aa4.71□□□□□ -1.66
PTCD3-211ENST00000476215 PRAMEF11O60813 436 aa4.71□□□□□ -1.66
PTCD3-211ENST00000476215 CREG1O75629 220 aa4.71□□□□□ -1.66
PTCD3-211ENST00000476215 ATP1A1P05023 1023 aaKnown RBP4.71□□□□□ -1.66
PTCD3-211ENST00000476215 TFAP2AP05549 437 aa4.71□□□□□ -1.66
PTCD3-211ENST00000476215 LIPFP07098 398 aa4.71□□□□□ -1.66
PTCD3-211ENST00000476215 CTAGE8P0CG41 777 aa4.71□□□□□ -1.66
PTCD3-211ENST00000476215 CSF2RAP15509 400 aa4.71□□□□□ -1.66
PTCD3-211ENST00000476215 MCCP23508 829 aa4.71□□□□□ -1.66
PTCD3-211ENST00000476215 KRT20P35900 424 aa4.71□□□□□ -1.66
PTCD3-211ENST00000476215 LIG4P49917 911 aa4.71□□□□□ -1.66
PTCD3-211ENST00000476215 RPL24P83731 157 aaKnown RBP4.71□□□□□ -1.66
PTCD3-211ENST00000476215 KRT81Q14533 505 aa4.71□□□□□ -1.66
PTCD3-211ENST00000476215 GCNT6Q5T4J0 391 aa4.71□□□□□ -1.66
PTCD3-211ENST00000476215 NDUFAF5Q5TEU4 345 aa4.71□□□□□ -1.66
PTCD3-211ENST00000476215 ADALQ6DHV7 355 aa4.71□□□□□ -1.66
PTCD3-211ENST00000476215 ZNF852Q6ZMS4 543 aa4.71□□□□□ -1.66
PTCD3-211ENST00000476215 ZNF771Q7L3S4 317 aaPredicted RBP4.71□□□□□ -1.66
PTCD3-211ENST00000476215 PIWIL4Q7Z3Z4 852 aaKnown RBP4.71□□□□□ -1.66
PTCD3-211ENST00000476215 PRPF39Q86UA1 669 aaKnown RBP4.71□□□□□ -1.66
PTCD3-211ENST00000476215 LONP2Q86WA8 852 aa4.71□□□□□ -1.66
PTCD3-211ENST00000476215 CEP57Q86XR8 500 aa4.71□□□□□ -1.66
PTCD3-211ENST00000476215 CTAGE4Q8IX94 777 aa4.71□□□□□ -1.66
PTCD3-211ENST00000476215 METTL27Q8N6F8 245 aaPredicted RBP4.71□□□□□ -1.66
PTCD3-211ENST00000476215 SMPDL3BQ92485 455 aa4.71□□□□□ -1.66
PTCD3-211ENST00000476215 PTERQ96BW5 349 aa4.71□□□□□ -1.66
PTCD3-211ENST00000476215 ERLEC1Q96DZ1 483 aa4.71□□□□□ -1.66
PTCD3-211ENST00000476215 FAM81BQ96LP2 452 aa4.71□□□□□ -1.66
PTCD3-211ENST00000476215 ZNF583Q96ND8 569 aa4.71□□□□□ -1.66
PTCD3-211ENST00000476215 ZNF582Q96NG8 517 aaPredicted RBP4.71□□□□□ -1.66
PTCD3-211ENST00000476215 SLA2Q9H6Q3 261 aa4.71□□□□□ -1.66
PTCD3-211ENST00000476215 HHATLQ9HCP6 504 aa4.71□□□□□ -1.66
PTCD3-211ENST00000476215 MBNL1Q9NR56 388 aaKnown RBP4.71□□□□□ -1.66
PTCD3-211ENST00000476215 MIOSQ9NXC5 875 aa4.71□□□□□ -1.66
PTCD3-211ENST00000476215 NKIRAS2Q9NYR9 191 aa4.71□□□□□ -1.66
PTCD3-211ENST00000476215 FAF1Q9UNN5 650 aaPredicted RBP4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms