RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 BMPR2Q13873 1038 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 LPAL2Q16609 132 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 TSNAXIP1Q2TAA8 658 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 PYCR3Q53H96 274 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 TAF8Q7Z7C8 310 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 LCA5Q86VQ0 697 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 PHACTR4Q8IZ21 702 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 PELI3Q8N2H9 469 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 AVL9Q8NBF6 648 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 OR2L2Q8NH16 312 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 MAGEC3Q8TD91 643 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 SREK1Q8WXA9 508 aaKnown RBP9.93□□□□□ -0.82
CD44-207ENST00000425428 TSACCQ96A04 125 aaPredicted RBP9.93□□□□□ -0.82
CD44-207ENST00000425428 PGM2Q96G03 612 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 LINC00615Q96LM1 132 aaPredicted RBP9.93□□□□□ -0.82
CD44-207ENST00000425428 BIRC8Q96P09 236 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 GPR21Q99679 349 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 DHRS4Q9BTZ2 278 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 STN1Q9H668 368 aaKnown RBP9.93□□□□□ -0.82
CD44-207ENST00000425428 LATS2Q9NRM7 1088 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 KLC4Q9NSK0 619 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 NCDNQ9UBB6 729 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 FAM8A1Q9UBU6 413 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 DCDC2Q9UHG0 476 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 LGALS13Q9UHV8 139 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 TMPRSS11EQ9UL52 423 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 MTO1Q9Y2Z2 717 aaKnown RBP9.93□□□□□ -0.82
CD44-207ENST00000425428 DHRS7Q9Y394 339 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 A0A096LPK6 155 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 A0A1B0GVT2 93 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 A0A1W2PR77 199 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 PDZK1P1A8MUH7 402 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 C10orf142B7Z368 130 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 FOXD2O60548 495 aaPredicted RBP9.93□□□□□ -0.82
CD44-207ENST00000425428 NIPSNAP2O75323 286 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 RETP07949 1114 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 ALPPL2P10696 532 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 COL6A2P12110 1019 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 FDXRP22570 491 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 MAP4P27816 1152 aaKnown RBP9.93□□□□□ -0.82
CD44-207ENST00000425428 GABRB3P28472 473 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 MPLP40238 635 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 SLC26A3P40879 764 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 ABCG1P45844 678 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 ARHGAP8P85298 464 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 B4GALNT1Q00973 533 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 SUZ12Q15022 739 aaKnown RBP9.93□□□□□ -0.82
CD44-207ENST00000425428 INAVAQ3KP66 663 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 PLA2G4EQ3MJ16 856 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 TRIM61Q5EBN2 209 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 ZNF789Q5FWF6 425 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 CTSL3PQ5NE16 218 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 TIFABQ6ZNK6 161 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 KRT222Q8N1A0 295 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 RAB42Q8N4Z0 105 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 GLMNQ92990 594 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 SCARF2Q96GP6 870 aaPredicted RBP9.93□□□□□ -0.82
CD44-207ENST00000425428 DPEP2Q9H4A9 486 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 NMRAL1Q9HBL8 299 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 FGF22Q9HCT0 170 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 MRPL40Q9NQ50 206 aaKnown RBP9.93□□□□□ -0.82
CD44-207ENST00000425428 SNX15Q9NRS6 342 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 EVA1BQ9NVM1 165 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 DNAJC16Q9Y2G8 782 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 HEBP2Q9Y5Z4 205 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 OR5K4A6NMS3 321 aa9.92□□□□□ -0.82
CD44-207ENST00000425428 HMGB1P1B2RPK0 211 aaPredicted RBP9.92□□□□□ -0.82
CD44-207ENST00000425428 COPEO14579 308 aa9.92□□□□□ -0.82
CD44-207ENST00000425428 TPP1O14773 563 aa9.92□□□□□ -0.82
CD44-207ENST00000425428 CSF2P04141 144 aa9.92□□□□□ -0.82
CD44-207ENST00000425428 S100BP04271 92 aaPredicted RBP9.92□□□□□ -0.82
CD44-207ENST00000425428 ANXA6P08133 673 aa9.92□□□□□ -0.82
CD44-207ENST00000425428 HIST1H2AGP0C0S8 130 aaPredicted RBP9.92□□□□□ -0.82
CD44-207ENST00000425428 NME1P15531 152 aaKnown RBP9.92□□□□□ -0.82
CD44-207ENST00000425428 HIST1H2ADP20671 130 aa9.92□□□□□ -0.82
CD44-207ENST00000425428 ACTR1BP42025 376 aa9.92□□□□□ -0.82
CD44-207ENST00000425428 CTSCP53634 463 aa9.92□□□□□ -0.82
CD44-207ENST00000425428 TAS2R39P59534 338 aa9.92□□□□□ -0.82
CD44-207ENST00000425428 ACTR1AP61163 376 aa9.92□□□□□ -0.82
CD44-207ENST00000425428 ATP6V0D1P61421 351 aa9.92□□□□□ -0.82
CD44-207ENST00000425428 FZD2Q14332 565 aa9.92□□□□□ -0.82
CD44-207ENST00000425428 ALG11Q2TAA5 492 aa9.92□□□□□ -0.82
CD44-207ENST00000425428 KHDC1Q4VXA5 237 aaKnown RBP9.92□□□□□ -0.82
CD44-207ENST00000425428 PRRT3Q5FWE3 981 aa9.92□□□□□ -0.82
CD44-207ENST00000425428 RBM20Q5T481 1227 aaKnown RBP9.92□□□□□ -0.82
CD44-207ENST00000425428 UBAP2Q5T6F2 1119 aaKnown RBP9.92□□□□□ -0.82
CD44-207ENST00000425428 AGBL2Q5U5Z8 902 aa9.92□□□□□ -0.82
CD44-207ENST00000425428 PEAR1Q5VY43 1037 aaPredicted RBP9.92□□□□□ -0.82
CD44-207ENST00000425428 SLC23A3Q6PIS1 610 aa9.92□□□□□ -0.82
CD44-207ENST00000425428 FRA10AC1Q70Z53 315 aa9.92□□□□□ -0.82
CD44-207ENST00000425428 TRIM48Q8IWZ4 208 aa9.92□□□□□ -0.82
CD44-207ENST00000425428 SRRM1Q8IYB3 904 aaKnown RBP9.92□□□□□ -0.82
CD44-207ENST00000425428 SIDT2Q8NBJ9 832 aaKnown RBP9.92□□□□□ -0.82
CD44-207ENST00000425428 OR1E3Q8WZA6 343 aa9.92□□□□□ -0.82
CD44-207ENST00000425428 FAM136AQ96C01 138 aa9.92□□□□□ -0.82
CD44-207ENST00000425428 PDXPQ96GD0 296 aa9.92□□□□□ -0.82
CD44-207ENST00000425428 SCYL1Q96KG9 808 aa9.92□□□□□ -0.82
CD44-207ENST00000425428 HIST1H2AHQ96KK5 128 aa9.92□□□□□ -0.82
CD44-207ENST00000425428 HIST1H2AJQ99878 128 aa9.92□□□□□ -0.82
CD44-207ENST00000425428 ORAI3Q9BRQ5 295 aa9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms