RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 BNIP1Q12981 228 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 WDR45BQ5MNZ6 344 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 PLA2G15Q8NCC3 412 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 IRGQQ8WZA9 623 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 LPPQ93052 612 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 LDHAL6BQ9BYZ2 381 aaPredicted RBP6.79□□□□□ -1.32
SCN1A-204ENST00000423058 C14orf105Q9NVL8 296 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 ZNF180Q9UJW8 692 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 SERTAD3Q9UJW9 196 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 BAIAP2Q9UQB8 552 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 DNMT3AQ9Y6K1 912 aaPredicted RBP6.79□□□□□ -1.32
SCN1A-204ENST00000423058 MBD5Q9P267 1494 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 A0A1B0GVC2 190 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 DUXAA6NLW8 204 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 VEGFDO43915 354 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 MAFO75444 373 aaPredicted RBP6.79□□□□□ -1.32
SCN1A-204ENST00000423058 UBOX5O94941 541 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 HRGP04196 525 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 CYP3A4P08684 503 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 FAM153BP0C7A2 387 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 JMJD7P0C870 316 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 COL6A1P12109 1028 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 CXCR1P25024 350 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 KIR3DL1P43629 444 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 SEC23AQ15436 765 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 TMEM63BQ5T3F8 832 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 ADNP2Q6IQ32 1131 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 SPESP1Q6UW49 350 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 C12orf40Q86WS4 652 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 CFAP52Q8N1V2 620 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 POC5Q8NA72 575 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 PMM1Q92871 262 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 AGO3Q9H9G7 860 aaKnown RBP6.79□□□□□ -1.32
SCN1A-204ENST00000423058 IFT80Q9P2H3 777 aaPredicted RBP6.79□□□□□ -1.32
SCN1A-204ENST00000423058 PLD2O14939 933 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 TCEA1P23193 301 aaKnown RBP6.78□□□□□ -1.32
SCN1A-204ENST00000423058 MAP3K8P41279 467 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 FLT3LGP49771 235 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 NAGLUP54802 743 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 C1QTNF8P60827 252 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 ABATP80404 500 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 CHAF1BQ13112 559 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 MAMLD1Q13495 774 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 HFE2Q6ZVN8 426 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 AMZ2Q86W34 360 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 NPAS4Q8IUM7 802 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 ZNF565Q8N9K5 539 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 OR52K2Q8NGK3 314 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 PPP1R14BQ96C90 147 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 NEDD4LQ96PU5 975 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 STOX2Q9P2F5 926 aaPredicted RBP6.78□□□□□ -1.32
SCN1A-204ENST00000423058 ARHGAP23Q9P227 1491 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 NPEPPSL1A6NEC2 478 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 DDTLA6NHG4 134 aaPredicted RBP6.78□□□□□ -1.32
SCN1A-204ENST00000423058 ELOA3DA6NLF2 546 aaPredicted RBP6.78□□□□□ -1.32
SCN1A-204ENST00000423058 MTHFRP42898 656 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 ENPP2Q13822 863 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 SLC1A5Q15758 541 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 ELOA3BQ3SY89 546 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 LRIF1Q5T3J3 769 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 ZFPM1Q8IX07 1006 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 ELOA3Q8NG57 546 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 ANKRD7Q92527 254 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 RNF157Q96PX1 679 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 SP140LQ9H930 580 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 NUDT4Q9NZJ9 180 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 PRPF19Q9UMS4 504 aaKnown RBP6.78□□□□□ -1.32
SCN1A-204ENST00000423058 HPSEQ9Y251 543 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 A0A1W2PQH9 124 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 ADAMTS3O15072 1205 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 GJB1P08034 283 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 ZBTB48P10074 688 aaPredicted RBP6.78□□□□□ -1.32
SCN1A-204ENST00000423058 ZNF41P51814 821 aaPredicted RBP6.78□□□□□ -1.32
SCN1A-204ENST00000423058 ADARP55265 1226 aaKnown RBP6.78□□□□□ -1.32
SCN1A-204ENST00000423058 TNS4Q8IZW8 715 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 UBE2J2Q8N2K1 259 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 ZNF347Q96SE7 839 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 MKKSQ9NPJ1 570 aaPredicted RBP6.78□□□□□ -1.32
SCN1A-204ENST00000423058 OSER1Q9NX31 292 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 IL36AQ9UHA7 158 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 DKKL1Q9UK85 242 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 FBXW2Q9UKT8 454 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 VWA7Q9Y334 891 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 PRORSD1PA6NEY8 169 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 ARL5CA6NH57 179 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 PSMD9O00233 223 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 PI15O43692 258 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 UGT2B4P06133 528 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 LINGO3P0C6S8 592 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 FASTKD3Q14CZ7 662 aaKnown RBP6.78□□□□□ -1.32
SCN1A-204ENST00000423058 GFOD2Q3B7J2 385 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 PDCD4Q53EL6 469 aaKnown RBP6.78□□□□□ -1.32
SCN1A-204ENST00000423058 KLHL22Q53GT1 634 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 POLNQ7Z5Q5 900 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 OXR1Q8N573 874 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 OR4K17Q8NGC6 315 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 EXOSC8Q96B26 276 aaKnown RBP6.78□□□□□ -1.32
SCN1A-204ENST00000423058 C12orf4Q9NQ89 552 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 ABCB10Q9NRK6 738 aa6.78□□□□□ -1.32
SCN1A-204ENST00000423058 TAS2R7Q9NYW3 318 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms