RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 PLEKHS1Q5SXH7 462 aa7.91□□□□□ -1.14
VIM-202ENST00000421459 FNBP1LQ5T0N5 605 aa7.91□□□□□ -1.14
VIM-202ENST00000421459 GPRC6AQ5T6X5 926 aa7.91□□□□□ -1.14
VIM-202ENST00000421459 PDPK2PQ6A1A2 396 aa7.91□□□□□ -1.14
VIM-202ENST00000421459 CAVIN1Q6NZI2 390 aaKnown RBP7.91□□□□□ -1.14
VIM-202ENST00000421459 KDELC1Q6UW63 502 aa7.91□□□□□ -1.14
VIM-202ENST00000421459 DAAM2Q86T65 1068 aa7.91□□□□□ -1.14
VIM-202ENST00000421459 AMZ2Q86W34 360 aa7.91□□□□□ -1.14
VIM-202ENST00000421459 TMEM126BQ8IUX1 230 aa7.91□□□□□ -1.14
VIM-202ENST00000421459 TMEM151BQ8IW70 566 aa7.91□□□□□ -1.14
VIM-202ENST00000421459 RBM12BQ8IXT5 1001 aaKnown RBP7.91□□□□□ -1.14
VIM-202ENST00000421459 EFCAB3Q8N7B9 438 aa7.91□□□□□ -1.14
VIM-202ENST00000421459 ENDOVQ8N8Q3 282 aaKnown RBP7.91□□□□□ -1.14
VIM-202ENST00000421459 Q8NA96 180 aa7.91□□□□□ -1.14
VIM-202ENST00000421459 GALNT11Q8NCW6 608 aa7.91□□□□□ -1.14
VIM-202ENST00000421459 FDCSPQ8NFU4 85 aa7.91□□□□□ -1.14
VIM-202ENST00000421459 SLC35G2Q8TBE7 412 aa7.91□□□□□ -1.14
VIM-202ENST00000421459 BLOC1S5Q8TDH9 187 aa7.91□□□□□ -1.14
VIM-202ENST00000421459 UBXN4Q92575 508 aa7.91□□□□□ -1.14
VIM-202ENST00000421459 ZNF501Q96CX3 271 aaPredicted RBP7.91□□□□□ -1.14
VIM-202ENST00000421459 OXNAD1Q96HP4 312 aaPredicted RBP7.91□□□□□ -1.14
VIM-202ENST00000421459 TEKT5Q96M29 485 aa7.91□□□□□ -1.14
VIM-202ENST00000421459 TTC25Q96NG3 672 aa7.91□□□□□ -1.14
VIM-202ENST00000421459 NUDT9Q9BW91 350 aa7.91□□□□□ -1.14
VIM-202ENST00000421459 TLR10Q9BXR5 811 aa7.91□□□□□ -1.14
VIM-202ENST00000421459 MAK16Q9BXY0 300 aaKnown RBP7.91□□□□□ -1.14
VIM-202ENST00000421459 KLHL25Q9H0H3 589 aa7.91□□□□□ -1.14
VIM-202ENST00000421459 MLXIPLQ9NP71 852 aa7.91□□□□□ -1.14
VIM-202ENST00000421459 CASS4Q9NQ75 786 aa7.91□□□□□ -1.14
VIM-202ENST00000421459 ACSS2Q9NR19 701 aa7.91□□□□□ -1.14
VIM-202ENST00000421459 RAD18Q9NS91 495 aa7.91□□□□□ -1.14
VIM-202ENST00000421459 KCND1Q9NSA2 647 aa7.91□□□□□ -1.14
VIM-202ENST00000421459 HAUS2Q9NVX0 235 aa7.91□□□□□ -1.14
VIM-202ENST00000421459 MAP10Q9P2G4 905 aa7.91□□□□□ -1.14
VIM-202ENST00000421459 NFKBIL1Q9UBC1 381 aaPredicted RBP7.91□□□□□ -1.14
VIM-202ENST00000421459 LUC7L2Q9Y383 392 aaKnown RBP7.91□□□□□ -1.14
VIM-202ENST00000421459 USP9YO00507 2555 aaPredicted RBP7.91□□□□□ -1.14
VIM-202ENST00000421459 USP9XQ93008 2570 aaPredicted RBP7.91□□□□□ -1.14
VIM-202ENST00000421459 LRRK2Q5S007 2527 aa7.9□□□□□ -1.14
VIM-202ENST00000421459 TNRC6AQ8NDV7 1962 aaKnown RBP7.9□□□□□ -1.14
VIM-202ENST00000421459 A0A0A6YYK5 440 aaPredicted RBP7.9□□□□□ -1.14
VIM-202ENST00000421459 LOC285095A0A1B0GVY8 99 aa7.9□□□□□ -1.14
VIM-202ENST00000421459 SLC9B1P1A6NJY1 282 aa7.9□□□□□ -1.14
VIM-202ENST00000421459 RECKO95980 971 aa7.9□□□□□ -1.14
VIM-202ENST00000421459 MBD3O95983 291 aa7.9□□□□□ -1.14
VIM-202ENST00000421459 POLBP06746 335 aa7.9□□□□□ -1.14
VIM-202ENST00000421459 CAPN1P07384 714 aa7.9□□□□□ -1.14
VIM-202ENST00000421459 H2AFZP0C0S5 128 aa7.9□□□□□ -1.14
VIM-202ENST00000421459 MTHFD1P11586 935 aaKnown RBP7.9□□□□□ -1.14
VIM-202ENST00000421459 VCLP18206 1134 aa7.9□□□□□ -1.14
VIM-202ENST00000421459 HNRNPH3P31942 346 aaKnown RBP7.9□□□□□ -1.14
VIM-202ENST00000421459 HMGCLP35914 325 aa7.9□□□□□ -1.14
VIM-202ENST00000421459 SPAM1P38567 509 aa7.9□□□□□ -1.14
VIM-202ENST00000421459 FOXL2P58012 376 aa7.9□□□□□ -1.14
VIM-202ENST00000421459 TUBB4BP68371 445 aa7.9□□□□□ -1.14
VIM-202ENST00000421459 HSD11B2P80365 405 aa7.9□□□□□ -1.14
VIM-202ENST00000421459 ACY1Q03154 408 aa7.9□□□□□ -1.14
VIM-202ENST00000421459 ABRQ12979 859 aa7.9□□□□□ -1.14
VIM-202ENST00000421459 XRCC4Q13426 336 aa7.9□□□□□ -1.14
VIM-202ENST00000421459 TUBB2AQ13885 445 aa7.9□□□□□ -1.14
VIM-202ENST00000421459 PDK1Q15118 436 aa7.9□□□□□ -1.14
VIM-202ENST00000421459 INPP5JQ15735 1006 aaPredicted RBP7.9□□□□□ -1.14
VIM-202ENST00000421459 PPP2R5EQ16537 467 aa7.9□□□□□ -1.14
VIM-202ENST00000421459 ASTE1Q2TB18 679 aaPredicted RBP7.9□□□□□ -1.14
VIM-202ENST00000421459 PTCHD3Q3KNS1 767 aa7.9□□□□□ -1.14
VIM-202ENST00000421459 KAZNQ674X7 775 aa7.9□□□□□ -1.14
VIM-202ENST00000421459 CCDC70Q6NSX1 233 aa7.9□□□□□ -1.14
VIM-202ENST00000421459 JMJD6Q6NYC1 403 aaPredicted RBP7.9□□□□□ -1.14
VIM-202ENST00000421459 MFSD7Q6UXD7 560 aa7.9□□□□□ -1.14
VIM-202ENST00000421459 H2AFVQ71UI9 128 aa7.9□□□□□ -1.14
VIM-202ENST00000421459 SYVN1Q86TM6 617 aa7.9□□□□□ -1.14
VIM-202ENST00000421459 D2HGDHQ8N465 521 aa7.9□□□□□ -1.14
VIM-202ENST00000421459 ZBTB2Q8N680 514 aa7.9□□□□□ -1.14
VIM-202ENST00000421459 RBMXL3Q8N7X1 1067 aaKnown RBP7.9□□□□□ -1.14
VIM-202ENST00000421459 OR4E2Q8NGC2 313 aa7.9□□□□□ -1.14
VIM-202ENST00000421459 OR1L3Q8NH93 324 aa7.9□□□□□ -1.14
VIM-202ENST00000421459 PRR7Q8TB68 274 aa7.9□□□□□ -1.14
VIM-202ENST00000421459 TRAF3IP1Q8TDR0 691 aaPredicted RBP7.9□□□□□ -1.14
VIM-202ENST00000421459 ADAMTS17Q8TE56 1095 aa7.9□□□□□ -1.14
VIM-202ENST00000421459 SSC4DQ8WTU2 575 aa7.9□□□□□ -1.14
VIM-202ENST00000421459 CTNNBL1Q8WYA6 563 aaPredicted RBP7.9□□□□□ -1.14
VIM-202ENST00000421459 HAUS1Q96CS2 278 aa7.9□□□□□ -1.14
VIM-202ENST00000421459 MRGPRX2Q96LB1 330 aa7.9□□□□□ -1.14
VIM-202ENST00000421459 C12orf66Q96MD2 445 aa7.9□□□□□ -1.14
VIM-202ENST00000421459 TUBB2BQ9BVA1 445 aa7.9□□□□□ -1.14
VIM-202ENST00000421459 GPR87Q9BY21 358 aa7.9□□□□□ -1.14
VIM-202ENST00000421459 FAM96AQ9H5X1 160 aa7.9□□□□□ -1.14
VIM-202ENST00000421459 SPTLC3Q9NUV7 552 aa7.9□□□□□ -1.14
VIM-202ENST00000421459 IL17CQ9P0M4 197 aa7.9□□□□□ -1.14
VIM-202ENST00000421459 IFNKQ9P0W0 207 aa7.9□□□□□ -1.14
VIM-202ENST00000421459 UVRAGQ9P2Y5 699 aa7.9□□□□□ -1.14
VIM-202ENST00000421459 ARL5AQ9Y689 179 aa7.9□□□□□ -1.14
VIM-202ENST00000421459 PCSK5Q92824 1860 aa7.89□□□□□ -1.15
VIM-202ENST00000421459 CELSR2Q9HCU4 2923 aa7.89□□□□□ -1.15
VIM-202ENST00000421459 CSMD1Q96PZ7 3565 aa7.89□□□□□ -1.15
VIM-202ENST00000421459 GLYATL1P3A0A0U1RQE8 302 aa7.89□□□□□ -1.15
VIM-202ENST00000421459 TLCD2A6NGC4 264 aa7.89□□□□□ -1.15
VIM-202ENST00000421459 MEN1O00255 615 aa7.89□□□□□ -1.15
VIM-202ENST00000421459 PPP1R12AO14974 1030 aaPredicted RBP7.89□□□□□ -1.15
VIM-202ENST00000421459 SGTAO43765 313 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms