RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 UGT1A5P35504 534 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 GCGRP47871 477 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 CSNK1EP49674 416 aaKnown RBP6.88□□□□□ -1.31
LIMA1-202ENST00000394943 UAP1L1Q3KQV9 507 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 ZNF789Q5FWF6 425 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 FAM83HQ6ZRV2 1179 aaPredicted RBP6.88□□□□□ -1.31
LIMA1-202ENST00000394943 TMEM151AQ8N4L1 468 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 LKAAEAR1Q8TD35 194 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 INPP5DQ92835 1189 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 CYTH2Q99418 400 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 MVB12BQ9H7P6 319 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 VPS37BQ9H9H4 285 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 UGT1A7Q9HAW7 530 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 UGT1A10Q9HAW8 530 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 UGT1A8Q9HAW9 530 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 SPATA7Q9P0W8 599 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 CA5BQ9Y2D0 317 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 ACTL7BQ9Y614 415 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 OR51F1A6NGY5 319 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 TARM1B6A8C7 271 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 PRSS56P0CW18 603 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 MSH3P20585 1137 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 SLC18A2Q05940 514 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 ARHGAP19Q14CB8 494 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 ZNF648Q5T619 568 aaPredicted RBP6.88□□□□□ -1.31
LIMA1-202ENST00000394943 RNF165Q6ZSG1 346 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 C3orf62Q6ZUJ4 267 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 PTAR1Q7Z6K3 402 aaPredicted RBP6.88□□□□□ -1.31
LIMA1-202ENST00000394943 RHEBL1Q8TAI7 183 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 RMDN2Q96LZ7 410 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 TRIM56Q9BRZ2 755 aaKnown RBP6.88□□□□□ -1.31
LIMA1-202ENST00000394943 DERL2Q9GZP9 239 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 TMEM9BQ9NQ34 198 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 TSC22D4Q9Y3Q8 395 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 HAUS5O94927 633 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 NDUFS1P28331 727 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 MAT2AP31153 395 aaKnown RBP6.87□□□□□ -1.31
LIMA1-202ENST00000394943 ACADVLP49748 655 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 VPS41P49754 854 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 EIF3BP55884 814 aaKnown RBP6.87□□□□□ -1.31
LIMA1-202ENST00000394943 PRAMEP78395 509 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 SUZ12Q15022 739 aaKnown RBP6.87□□□□□ -1.31
LIMA1-202ENST00000394943 BBS9Q3SYG4 887 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 UGT3A1Q6NUS8 523 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 TMEM207Q6UWW9 146 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 GALNT13Q8IUC8 556 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 NAGSQ8N159 534 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 MINDY1Q8N5J2 469 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 FBF1Q8TES7 1133 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 CDC6Q99741 560 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 SH3GL2Q99962 352 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 C20orf96Q9NUD7 363 aaPredicted RBP6.87□□□□□ -1.31
LIMA1-202ENST00000394943 OGFRQ9NZT2 677 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 ANKMY1Q9P2S6 941 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 TMCO1Q9UM00 188 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 PSAT1Q9Y617 370 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 CACNA1EQ15878 2313 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 NUMA1Q14980 2115 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 PATE3B3GLJ2 98 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 F5H423 210 aaPredicted RBP6.87□□□□□ -1.31
LIMA1-202ENST00000394943 GOLGA8MH3BSY2 632 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 MAP2K7O14733 419 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 YY2O15391 372 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 OR1I1O60431 355 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 GSTA1P08263 222 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 F3P13726 295 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 SSTR1P30872 391 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 HSD17B3P37058 310 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 GRK6P43250 576 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 NFKB2Q00653 900 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 SEMG2Q02383 582 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 INSCQ1MX18 579 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 WDR74Q6RFH5 385 aaPredicted RBP6.87□□□□□ -1.31
LIMA1-202ENST00000394943 KDELC2Q7Z4H8 507 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 DENND6AQ8IWF6 608 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 TBC1D21Q8IYX1 336 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 BEND7Q8N7W2 519 aaPredicted RBP6.87□□□□□ -1.31
LIMA1-202ENST00000394943 ASB11Q8WXH4 323 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 PIGKQ92643 395 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 TCEAL2Q9H3H9 227 aaPredicted RBP6.87□□□□□ -1.31
LIMA1-202ENST00000394943 TAAR2Q9P1P5 351 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 APOBEC3BQ9UH17 382 aaKnown RBP6.87□□□□□ -1.31
LIMA1-202ENST00000394943 CRLS1Q9UJA2 301 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 ONECUT2O95948 504 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 MTHFD1P11586 935 aaKnown RBP6.87□□□□□ -1.31
LIMA1-202ENST00000394943 JUNDP17535 347 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 MAOBP27338 520 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 CRABP2P29373 138 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 ARRB1P49407 418 aaPredicted RBP6.87□□□□□ -1.31
LIMA1-202ENST00000394943 CDKN2DP55273 166 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 KBTBD12Q3ZCT8 623 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 C14orf28Q4W4Y0 310 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 CNSTQ6PJW8 725 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 ENPP7Q6UWV6 458 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 CROCCP2Q86T23 111 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 NAXDQ8IW45 347 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 UNC5BQ8IZJ1 945 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 OR6Y1Q8NGX8 325 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 OR5K2Q8NHB8 316 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 CABS1Q96KC9 395 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms