RNA–Protein interactions for RNA: ENST00000393546.8

PDLIM7-204, Transcript of PDZ and LIM domain 7, humanhuman

TSL 3

Gene PDLIM7, Length 671 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM7-204ENST00000393546 RPL21P46778 160 aaKnown RBP18.63■□□□□ 0.57
PDLIM7-204ENST00000393546 ARCN1P48444 511 aaKnown RBP18.63■□□□□ 0.57
PDLIM7-204ENST00000393546 DHX9Q08211 1270 aaKnown RBP18.63■□□□□ 0.57
PDLIM7-204ENST00000393546 CALCOCO2Q13137 446 aa18.63■□□□□ 0.57
PDLIM7-204ENST00000393546 BBS9Q3SYG4 887 aa18.63■□□□□ 0.57
PDLIM7-204ENST00000393546 LDB1Q86U70 411 aaPredicted RBP18.63■□□□□ 0.57
PDLIM7-204ENST00000393546 MARCH9Q86YJ5 346 aa18.63■□□□□ 0.57
PDLIM7-204ENST00000393546 AGGF1Q8N302 714 aaeCLIP18.63■□□□□ 0.57
PDLIM7-204ENST00000393546 CXorf40BQ96DE9 158 aa18.63■□□□□ 0.57
PDLIM7-204ENST00000393546 TCF12Q99081 682 aa18.63■□□□□ 0.57
PDLIM7-204ENST00000393546 EBNA1BP2Q99848 306 aaKnown RBP18.63■□□□□ 0.57
PDLIM7-204ENST00000393546 NAT9Q9BTE0 207 aa18.63■□□□□ 0.57
PDLIM7-204ENST00000393546 KCNK4Q9NYG8 393 aa18.63■□□□□ 0.57
PDLIM7-204ENST00000393546 ZNF624Q9P2J8 865 aaPredicted RBP18.63■□□□□ 0.57
PDLIM7-204ENST00000393546 PSMD13Q9UNM6 376 aa18.63■□□□□ 0.57
PDLIM7-204ENST00000393546 WDR37Q9Y2I8 494 aa18.63■□□□□ 0.57
PDLIM7-204ENST00000393546 UTP11Q9Y3A2 253 aaKnown RBP18.63■□□□□ 0.57
PDLIM7-204ENST00000393546 PRSS21Q9Y6M0 314 aa18.63■□□□□ 0.57
PDLIM7-204ENST00000393546 A0A1W2PQM1 296 aa18.62■□□□□ 0.57
PDLIM7-204ENST00000393546 GOLGA8KD6RF30 607 aa18.62■□□□□ 0.57
PDLIM7-204ENST00000393546 GOLGA8TH3BQL2 631 aa18.62■□□□□ 0.57
PDLIM7-204ENST00000393546 PGAM1P18669 254 aa18.62■□□□□ 0.57
PDLIM7-204ENST00000393546 ARL4CP56559 192 aa18.62■□□□□ 0.57
PDLIM7-204ENST00000393546 UBE2IP63279 158 aaKnown RBP18.62■□□□□ 0.57
PDLIM7-204ENST00000393546 THOC5Q13769 683 aaKnown RBP18.62■□□□□ 0.57
PDLIM7-204ENST00000393546 CLCA4Q14CN2 919 aa18.62■□□□□ 0.57
PDLIM7-204ENST00000393546 AMZ1Q400G9 498 aa18.62■□□□□ 0.57
PDLIM7-204ENST00000393546 NEPROQ6NW34 567 aa18.62■□□□□ 0.57
PDLIM7-204ENST00000393546 MNS1Q8NEH6 495 aa18.62■□□□□ 0.57
PDLIM7-204ENST00000393546 GPR150Q8NGU9 434 aa18.62■□□□□ 0.57
PDLIM7-204ENST00000393546 TRIM56Q9BRZ2 755 aaKnown RBP18.62■□□□□ 0.57
PDLIM7-204ENST00000393546 TSSK1BQ9BXA7 367 aa18.62■□□□□ 0.57
PDLIM7-204ENST00000393546 WWP1Q9H0M0 922 aa18.62■□□□□ 0.57
PDLIM7-204ENST00000393546 RAB17Q9H0T7 212 aa18.62■□□□□ 0.57
PDLIM7-204ENST00000393546 DPH5Q9H2P9 285 aa18.62■□□□□ 0.57
PDLIM7-204ENST00000393546 POT1Q9NUX5 634 aa18.62■□□□□ 0.57
PDLIM7-204ENST00000393546 WHRNQ9P202 907 aa18.62■□□□□ 0.57
PDLIM7-204ENST00000393546 MRFAP1Q9Y605 127 aa18.62■□□□□ 0.57
PDLIM7-204ENST00000393546 FAM169AQ9Y6X4 670 aa18.62■□□□□ 0.57
PDLIM7-204ENST00000393546 ZCWPW2A0A1B0GU75 182 aa18.61■□□□□ 0.57
PDLIM7-204ENST00000393546 OR52A4PA6NMU1 304 aa18.61■□□□□ 0.57
PDLIM7-204ENST00000393546 PRMT5O14744 637 aaPredicted RBP18.61■□□□□ 0.57
PDLIM7-204ENST00000393546 CSO75390 466 aaKnown RBP18.61■□□□□ 0.57
PDLIM7-204ENST00000393546 TTC4O95801 387 aa18.61■□□□□ 0.57
PDLIM7-204ENST00000393546 PPM1FP49593 454 aaPredicted RBP18.61■□□□□ 0.57
PDLIM7-204ENST00000393546 GPLD1P80108 840 aa18.61■□□□□ 0.57
PDLIM7-204ENST00000393546 HIF1AQ16665 826 aa18.61■□□□□ 0.57
PDLIM7-204ENST00000393546 LONRF1Q17RB8 773 aa18.61■□□□□ 0.57
PDLIM7-204ENST00000393546 MSS51Q4VC12 460 aa18.61■□□□□ 0.57
PDLIM7-204ENST00000393546 RNF187Q5TA31 235 aaPredicted RBP18.61■□□□□ 0.57
PDLIM7-204ENST00000393546 DUPD1Q68J44 220 aa18.61■□□□□ 0.57
PDLIM7-204ENST00000393546 RBM12BQ8IXT5 1001 aaKnown RBP18.61■□□□□ 0.57
PDLIM7-204ENST00000393546 SERBP1Q8NC51 408 aaKnown RBP eCLIP18.61■□□□□ 0.57
PDLIM7-204ENST00000393546 GRAMD1AQ96CP6 724 aa18.61■□□□□ 0.57
PDLIM7-204ENST00000393546 LRRC39Q96DD0 335 aa18.61■□□□□ 0.57
PDLIM7-204ENST00000393546 AHCYL2Q96HN2 611 aaKnown RBP18.61■□□□□ 0.57
PDLIM7-204ENST00000393546 COG4Q9H9E3 785 aa18.61■□□□□ 0.57
PDLIM7-204ENST00000393546 UCK1Q9HA47 277 aa18.61■□□□□ 0.57
PDLIM7-204ENST00000393546 C20orf96Q9NUD7 363 aaPredicted RBP18.61■□□□□ 0.57
PDLIM7-204ENST00000393546 IGHV1OR21-1A0A087WYE8 117 aa18.6■□□□□ 0.57
PDLIM7-204ENST00000393546 TMX2-CTNND1H3BSU7 103 aa18.6■□□□□ 0.57
PDLIM7-204ENST00000393546 CASC3O15234 703 aaKnown RBP18.6■□□□□ 0.57
PDLIM7-204ENST00000393546 SLC35G4P0C7Q5 338 aa18.6■□□□□ 0.57
PDLIM7-204ENST00000393546 OGNP20774 298 aaKnown RBP18.6■□□□□ 0.57
PDLIM7-204ENST00000393546 CD1CP29017 333 aa18.6■□□□□ 0.57
PDLIM7-204ENST00000393546 RPA4Q13156 261 aa18.6■□□□□ 0.57
PDLIM7-204ENST00000393546 RPE65Q16518 533 aa18.6■□□□□ 0.57
PDLIM7-204ENST00000393546 CLPPQ16740 277 aaPredicted RBP18.6■□□□□ 0.57
PDLIM7-204ENST00000393546 ISXQ2M1V0 245 aa18.6■□□□□ 0.57
PDLIM7-204ENST00000393546 SPANXN3Q5MJ09 141 aa18.6■□□□□ 0.57
PDLIM7-204ENST00000393546 PTRHD1Q6GMV3 140 aaKnown RBP18.6■□□□□ 0.57
PDLIM7-204ENST00000393546 USP53Q70EK8 1073 aa18.6■□□□□ 0.57
PDLIM7-204ENST00000393546 PIM3Q86V86 326 aa18.6■□□□□ 0.57
PDLIM7-204ENST00000393546 LRRC6Q86X45 466 aa18.6■□□□□ 0.57
PDLIM7-204ENST00000393546 ZNF761Q86XN6 746 aaPredicted RBP18.6■□□□□ 0.57
PDLIM7-204ENST00000393546 LMNTD2Q8IXW0 634 aa18.6■□□□□ 0.57
PDLIM7-204ENST00000393546 LILRA3Q8N6C8 439 aaPredicted RBP18.6■□□□□ 0.57
PDLIM7-204ENST00000393546 OR10G6Q8NH81 332 aa18.6■□□□□ 0.57
PDLIM7-204ENST00000393546 CALML6Q8TD86 181 aa18.6■□□□□ 0.57
PDLIM7-204ENST00000393546 ELMO1Q92556 727 aa18.6■□□□□ 0.57
PDLIM7-204ENST00000393546 PWWP2AQ96N64 755 aa18.6■□□□□ 0.57
PDLIM7-204ENST00000393546 CARD6Q9BX69 1037 aa18.6■□□□□ 0.57
PDLIM7-204ENST00000393546 ATXN7L1Q9ULK2 861 aaPredicted RBP18.6■□□□□ 0.57
PDLIM7-204ENST00000393546 VPS9D1Q9Y2B5 631 aa18.6■□□□□ 0.57
PDLIM7-204ENST00000393546 UBA6A0AVT1 1052 aaPredicted RBP18.59■□□□□ 0.57
PDLIM7-204ENST00000393546 D6RAR5 112 aa18.59■□□□□ 0.57
PDLIM7-204ENST00000393546 LIN7AO14910 233 aaPredicted RBP18.59■□□□□ 0.57
PDLIM7-204ENST00000393546 TP73O15350 636 aa18.59■□□□□ 0.57
PDLIM7-204ENST00000393546 BANF1O75531 89 aa18.59■□□□□ 0.57
PDLIM7-204ENST00000393546 CPNE6O95741 557 aa18.59■□□□□ 0.57
PDLIM7-204ENST00000393546 ELK3P41970 407 aa18.59■□□□□ 0.57
PDLIM7-204ENST00000393546 EPHA4P54764 986 aa18.59■□□□□ 0.57
PDLIM7-204ENST00000393546 PLOD1Q02809 727 aaPredicted RBP18.59■□□□□ 0.57
PDLIM7-204ENST00000393546 SQSTM1Q13501 440 aa18.59■□□□□ 0.57
PDLIM7-204ENST00000393546 TYSND1Q2T9J0 566 aa18.59■□□□□ 0.57
PDLIM7-204ENST00000393546 ZNF658BQ4V348 819 aaPredicted RBP18.59■□□□□ 0.57
PDLIM7-204ENST00000393546 CAPRIN2Q6IMN6 1127 aaKnown RBP18.59■□□□□ 0.57
PDLIM7-204ENST00000393546 C8orf74Q6P047 294 aa18.59■□□□□ 0.57
PDLIM7-204ENST00000393546 TMEM26Q6ZUK4 368 aa18.59■□□□□ 0.57
PDLIM7-204ENST00000393546 GABPB2Q8TAK5 448 aaPredicted RBP18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms