RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 OR7A10O76100 309 aa12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 ANGPTL1O95841 491 aa12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 MMP3P08254 477 aa12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 NOMO1Q15155 1222 aa12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 KLHL22Q53GT1 634 aa12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 ERMAPQ96PL5 475 aaPredicted RBP12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 TCF7L1Q9HCS4 588 aa12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 DEPDC5O75140 1603 aa12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 TRIM64A6NGJ6 449 aa12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 ABLIM1O14639 778 aa12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 EDF1O60869 148 aaKnown RBP12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 RLN2P04090 185 aa12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 CD2P06729 351 aa12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 GPIP06744 558 aa12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 CCKBRP32239 447 aa12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 DEFB132Q7Z7B7 95 aa12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 LCN9Q8WX39 176 aa12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 IPPKQ9H8X2 491 aa12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 R3HDM2Q9Y2K5 976 aaKnown RBP12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 LRRC10BA6NIK2 292 aa12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 CYP17A1P05093 508 aa12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 GSTCDQ8NEC7 633 aa12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 LRRN4Q8WUT4 740 aa12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 PMM1Q92871 262 aa12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 RFT1Q96AA3 541 aa12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 ROPN1LQ96C74 230 aa12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 MSI1O43347 362 aaKnown RBP12.65□□□□□ -0.39
CCDC88C-204ENST00000389857 TACR2P21452 398 aa12.65□□□□□ -0.39
CCDC88C-204ENST00000389857 ILF3Q12906 894 aaKnown RBP eCLIP12.65□□□□□ -0.39
CCDC88C-204ENST00000389857 HSPB3Q12988 150 aa12.65□□□□□ -0.39
CCDC88C-204ENST00000389857 KLF10Q13118 480 aa12.65□□□□□ -0.39
CCDC88C-204ENST00000389857 LIX1Q8N485 282 aa12.65□□□□□ -0.39
CCDC88C-204ENST00000389857 GAL3ST4Q96RP7 486 aa12.65□□□□□ -0.39
CCDC88C-204ENST00000389857 PAK6Q9NQU5 681 aaPredicted RBP12.65□□□□□ -0.39
CCDC88C-204ENST00000389857 MRPS17Q9Y2R5 130 aaKnown RBP12.65□□□□□ -0.39
CCDC88C-204ENST00000389857 PEX16Q9Y5Y5 336 aa12.65□□□□□ -0.39
CCDC88C-204ENST00000389857 FKBP7Q9Y680 259 aa12.65□□□□□ -0.39
CCDC88C-204ENST00000389857 ADAMTS13Q76LX8 1427 aa12.65□□□□□ -0.39
CCDC88C-204ENST00000389857 CCNFP41002 786 aa12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 MC1RQ01726 317 aa12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 WRAP53Q9BUR4 548 aaKnown RBP12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 C11orf16Q9NQ32 467 aa12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 PRAMEF1O95521 474 aa12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 POP4O95707 220 aaKnown RBP12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 SP2Q02086 613 aa12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 COX18Q8N8Q8 333 aa12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 OR5B17Q8NGF7 314 aa12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 HAS1Q92839 578 aa12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 PRICKLE1Q96MT3 831 aaPredicted RBP12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 ZNF570Q96NI8 536 aa12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 CSPG4P5Q96PW8 444 aa12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 AGAP2Q99490 1192 aa12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 FAM124BQ9H5Z6 455 aaPredicted RBP12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 SLC17A7Q9P2U7 560 aa12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 PSMD9O00233 223 aa12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 GSC2O15499 205 aa12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 IL23RQ5VWK5 629 aa12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 ANKS1BQ7Z6G8 1248 aa12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 GPR21Q99679 349 aa12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 STBD1O95210 358 aa12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 AP2A1O95782 977 aa12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 CASRP41180 1078 aa12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 MARCKSL1P49006 195 aa12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 FKBP1BP68106 108 aa12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 VLDLRP98155 873 aa12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 CDKL1Q00532 357 aa12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 CLCQ05315 142 aa12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 SLC13A2Q13183 592 aa12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 ATAT1Q5SQI0 421 aa12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 SATL1Q86VE3 508 aa12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 XYLT1Q86Y38 959 aa12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 SUN3Q8TAQ9 357 aa12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 RAB11FIP5Q9BXF6 653 aa12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 EVLQ9UI08 416 aaPredicted RBP12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 ERVK-11Q9UQG0 969 aa12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 MEGF6O75095 1541 aa12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 A0A1W2PPM1 405 aa12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 WASHC1A8K0Z3 465 aa12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 MAGEB17A8MXT2 336 aa12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 WASH3PC4AMC7 463 aa12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 MEIS2O14770 477 aa12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 FFAR2O15552 330 aa12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 EIF5AP63241 154 aaKnown RBP12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 BTN3A2P78410 334 aa12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 ITGA7Q13683 1181 aa12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 PRKD1Q15139 912 aaPredicted RBP12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 DEFB115Q30KQ5 88 aa12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 ALG1LQ6GMV1 187 aa12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 WASH2PQ6VEQ5 465 aa12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 NKD1Q969G9 470 aa12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 TP53INP1Q96A56 240 aa12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 SLC35G5Q96KT7 338 aa12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 ZNF282Q9UDV7 671 aaPredicted RBP12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 DGKBQ9Y6T7 804 aa12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 PRPS2P11908 318 aa12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 SELPP16109 830 aa12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 NDST2P52849 883 aa12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 YBEYP58557 167 aaPredicted RBP12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 ARF3P61204 181 aaPredicted RBP12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 ARF1P84077 181 aaKnown RBP12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms