RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 NCSTNQ92542 709 aa13.18□□□□□ -0.3
CCDC3-202ENST00000378839 ISG20Q96AZ6 181 aaKnown RBP13.18□□□□□ -0.3
CCDC3-202ENST00000378839 PRPF18Q99633 342 aaKnown RBP13.18□□□□□ -0.3
CCDC3-202ENST00000378839 HERC2P3Q9BVR0 1158 aa13.18□□□□□ -0.3
CCDC3-202ENST00000378839 LRRC3Q9BY71 257 aa13.18□□□□□ -0.3
CCDC3-202ENST00000378839 HACD3Q9P035 362 aa13.18□□□□□ -0.3
CCDC3-202ENST00000378839 AURKCQ9UQB9 309 aa13.18□□□□□ -0.3
CCDC3-202ENST00000378839 TRIM17Q9Y577 477 aa13.18□□□□□ -0.3
CCDC3-202ENST00000378839 SLC30A1Q9Y6M5 507 aa13.18□□□□□ -0.3
CCDC3-202ENST00000378839 SAC3D1A6NKF1 404 aa13.18□□□□□ -0.3
CCDC3-202ENST00000378839 VPS4BO75351 444 aa13.18□□□□□ -0.3
CCDC3-202ENST00000378839 TRIM16O95361 564 aa13.18□□□□□ -0.3
CCDC3-202ENST00000378839 GNRH1P01148 92 aa13.18□□□□□ -0.3
CCDC3-202ENST00000378839 CASP2P42575 452 aa13.18□□□□□ -0.3
CCDC3-202ENST00000378839 APOFQ13790 326 aa13.18□□□□□ -0.3
CCDC3-202ENST00000378839 GTF2H2Q13888 395 aa13.18□□□□□ -0.3
CCDC3-202ENST00000378839 LRRC23Q53EV4 343 aaPredicted RBP13.18□□□□□ -0.3
CCDC3-202ENST00000378839 PYCR3Q53H96 274 aa13.18□□□□□ -0.3
CCDC3-202ENST00000378839 NHSL2Q5HYW2 709 aa13.18□□□□□ -0.3
CCDC3-202ENST00000378839 GTF2H2CQ6P1K8 395 aa13.18□□□□□ -0.3
CCDC3-202ENST00000378839 GALNT15Q8N3T1 639 aa13.18□□□□□ -0.3
CCDC3-202ENST00000378839 ANKFN1Q8N957 763 aa13.18□□□□□ -0.3
CCDC3-202ENST00000378839 FNDC5Q8NAU1 212 aa13.18□□□□□ -0.3
CCDC3-202ENST00000378839 GPR26Q8NDV2 337 aa13.18□□□□□ -0.3
CCDC3-202ENST00000378839 DOCK6Q96HP0 2047 aa13.18□□□□□ -0.3
CCDC3-202ENST00000378839 ZNF696Q9H7X3 374 aa13.18□□□□□ -0.3
CCDC3-202ENST00000378839 NUDT4Q9NZJ9 180 aa13.18□□□□□ -0.3
CCDC3-202ENST00000378839 LMCD1Q9NZU5 365 aa13.18□□□□□ -0.3
CCDC3-202ENST00000378839 CFAP97Q9P2B7 532 aa13.18□□□□□ -0.3
CCDC3-202ENST00000378839 PTBP2Q9UKA9 531 aaKnown RBP13.18□□□□□ -0.3
CCDC3-202ENST00000378839 TRBV5-4A0A0C4DH59 114 aa13.17□□□□□ -0.3
CCDC3-202ENST00000378839 AKAP10O43572 662 aa13.17□□□□□ -0.3
CCDC3-202ENST00000378839 SYNCRIPO60506 623 aaKnown RBP13.17□□□□□ -0.3
CCDC3-202ENST00000378839 LILRB3O75022 631 aa13.17□□□□□ -0.3
CCDC3-202ENST00000378839 GNAO1P09471 354 aa13.17□□□□□ -0.3
CCDC3-202ENST00000378839 BMP2P12643 396 aa13.17□□□□□ -0.3
CCDC3-202ENST00000378839 HRH2P25021 359 aa13.17□□□□□ -0.3
CCDC3-202ENST00000378839 DGKQP52824 942 aa13.17□□□□□ -0.3
CCDC3-202ENST00000378839 LIPEQ05469 1076 aa13.17□□□□□ -0.3
CCDC3-202ENST00000378839 VEPH1Q14D04 833 aa13.17□□□□□ -0.3
CCDC3-202ENST00000378839 PDCD4Q53EL6 469 aaKnown RBP13.17□□□□□ -0.3
CCDC3-202ENST00000378839 AARS2Q5JTZ9 985 aaKnown RBP13.17□□□□□ -0.3
CCDC3-202ENST00000378839 GPRC6AQ5T6X5 926 aa13.17□□□□□ -0.3
CCDC3-202ENST00000378839 NANOGP8Q6NSW7 305 aa13.17□□□□□ -0.3
CCDC3-202ENST00000378839 IL27RAQ6UWB1 636 aa13.17□□□□□ -0.3
CCDC3-202ENST00000378839 DLEU7Q6UYE1 221 aa13.17□□□□□ -0.3
CCDC3-202ENST00000378839 TMC8Q8IU68 726 aa13.17□□□□□ -0.3
CCDC3-202ENST00000378839 AHI1Q8N157 1196 aa13.17□□□□□ -0.3
CCDC3-202ENST00000378839 PBXIP1Q96AQ6 731 aa13.17□□□□□ -0.3
CCDC3-202ENST00000378839 TMEM169Q96HH4 297 aa13.17□□□□□ -0.3
CCDC3-202ENST00000378839 LMLNQ96KR4 655 aa13.17□□□□□ -0.3
CCDC3-202ENST00000378839 NANOGQ9H9S0 305 aa13.17□□□□□ -0.3
CCDC3-202ENST00000378839 AGPAT4Q9NRZ5 378 aa13.17□□□□□ -0.3
CCDC3-202ENST00000378839 ZNF106Q9H2Y7 1883 aaKnown RBP13.17□□□□□ -0.3
CCDC3-202ENST00000378839 FKTNO75072 461 aa13.17□□□□□ -0.3
CCDC3-202ENST00000378839 GABRR2P28476 465 aa13.17□□□□□ -0.3
CCDC3-202ENST00000378839 EPHB3P54753 998 aa13.17□□□□□ -0.3
CCDC3-202ENST00000378839 AP1S1P61966 158 aa13.17□□□□□ -0.3
CCDC3-202ENST00000378839 ROR2Q01974 943 aaKnown RBP13.17□□□□□ -0.3
CCDC3-202ENST00000378839 NADK2Q4G0N4 442 aa13.17□□□□□ -0.3
CCDC3-202ENST00000378839 SLC44A4Q53GD3 710 aa13.17□□□□□ -0.3
CCDC3-202ENST00000378839 COQ5Q5HYK3 327 aa13.17□□□□□ -0.3
CCDC3-202ENST00000378839 LRRC73Q5JTD7 316 aa13.17□□□□□ -0.3
CCDC3-202ENST00000378839 PTRHD1Q6GMV3 140 aaKnown RBP13.17□□□□□ -0.3
CCDC3-202ENST00000378839 ASTLQ6HA08 431 aaPredicted RBP13.17□□□□□ -0.3
CCDC3-202ENST00000378839 METTL6Q8TCB7 284 aa13.17□□□□□ -0.3
CCDC3-202ENST00000378839 PPWD1Q96BP3 646 aaKnown RBP13.17□□□□□ -0.3
CCDC3-202ENST00000378839 ZNF558Q96NG5 402 aa13.17□□□□□ -0.3
CCDC3-202ENST00000378839 GRIP2Q9C0E4 1043 aa13.17□□□□□ -0.3
CCDC3-202ENST00000378839 IPPKQ9H8X2 491 aa13.17□□□□□ -0.3
CCDC3-202ENST00000378839 ACTR3BQ9P1U1 418 aa13.17□□□□□ -0.3
CCDC3-202ENST00000378839 OGDHLQ9ULD0 1010 aa13.17□□□□□ -0.3
CCDC3-202ENST00000378839 ZFC3H1O60293 1989 aaKnown RBP13.16□□□□□ -0.3
CCDC3-202ENST00000378839 DHRS12A0PJE2 317 aa13.16□□□□□ -0.3
CCDC3-202ENST00000378839 KRT87PA6NCN2 255 aa13.16□□□□□ -0.3
CCDC3-202ENST00000378839 CCDC154A6NI56 674 aa13.16□□□□□ -0.3
CCDC3-202ENST00000378839 MT-ND1P03886 318 aa13.16□□□□□ -0.3
CCDC3-202ENST00000378839 ACRV1P26436 265 aa13.16□□□□□ -0.3
CCDC3-202ENST00000378839 KCNK10P57789 538 aa13.16□□□□□ -0.3
CCDC3-202ENST00000378839 OR4D2P58180 307 aa13.16□□□□□ -0.3
CCDC3-202ENST00000378839 TXNL4AP83876 142 aaKnown RBP13.16□□□□□ -0.3
CCDC3-202ENST00000378839 B4GALNT1Q00973 533 aa13.16□□□□□ -0.3
CCDC3-202ENST00000378839 MYLK3Q32MK0 819 aa13.16□□□□□ -0.3
CCDC3-202ENST00000378839 TBCELQ5QJ74 424 aa13.16□□□□□ -0.3
CCDC3-202ENST00000378839 TRIM74Q86UV6 250 aa13.16□□□□□ -0.3
CCDC3-202ENST00000378839 TRIM73Q86UV7 250 aa13.16□□□□□ -0.3
CCDC3-202ENST00000378839 RALGPS2Q86X27 583 aaPredicted RBP13.16□□□□□ -0.3
CCDC3-202ENST00000378839 PIP4K2CQ8TBX8 421 aa13.16□□□□□ -0.3
CCDC3-202ENST00000378839 CENPKQ9BS16 269 aa13.16□□□□□ -0.3
CCDC3-202ENST00000378839 RBM38Q9H0Z9 239 aaKnown RBP13.16□□□□□ -0.3
CCDC3-202ENST00000378839 ALG2Q9H553 416 aa13.16□□□□□ -0.3
CCDC3-202ENST00000378839 OLAHQ9NV23 265 aa13.16□□□□□ -0.3
CCDC3-202ENST00000378839 CCL26Q9Y258 94 aa13.16□□□□□ -0.3
CCDC3-202ENST00000378839 COMMD10Q9Y6G5 202 aa13.16□□□□□ -0.3
CCDC3-202ENST00000378839 CHD7Q9P2D1 2997 aa13.16□□□□□ -0.3
CCDC3-202ENST00000378839 KIAA1671Q9BY89 1806 aa13.16□□□□□ -0.3
CCDC3-202ENST00000378839 ACOX3O15254 700 aa13.16□□□□□ -0.3
CCDC3-202ENST00000378839 TGM5O43548 720 aa13.16□□□□□ -0.3
CCDC3-202ENST00000378839 LATS1O95835 1130 aa13.16□□□□□ -0.3
CCDC3-202ENST00000378839 FAM58BPP0C7Q3 252 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms