RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 ZFP3Q96NJ6 502 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 GORASP1Q9BQQ3 440 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 TRMT61BQ9BVS5 477 aaKnown RBP13.56□□□□□ -0.24
COL4A1-201ENST00000375820 SLC17A6Q9P2U8 582 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 PFDN2Q9UHV9 154 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 ZSCAN5BA6NJL1 495 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 PRMT5O14744 637 aaPredicted RBP13.56□□□□□ -0.24
COL4A1-201ENST00000375820 FKTNO75072 461 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 PRH1P02810 166 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 TNFRSF8P28908 595 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 MTPNP58546 118 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 ERVK-21P61565 698 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 CLCQ05315 142 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 UBXN11Q5T124 520 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 DGLUCYQ7Z3D6 616 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 TBC1D21Q8IYX1 336 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 UNC5BQ8IZJ1 945 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 BTN2A3PQ96KV6 586 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 INTS10Q9NVR2 710 aaKnown RBP13.56□□□□□ -0.24
COL4A1-201ENST00000375820 PRAMEF33A0A0G2JMD5 474 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 FADS2P1A8MWK0 482 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 ALOX15BO15296 676 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 TGFB1I1O43294 461 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 PRAMEF10O60809 474 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 EIF2S3P41091 472 aaKnown RBP13.56□□□□□ -0.24
COL4A1-201ENST00000375820 ZACNQ401N2 412 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 PLET1Q6UQ28 207 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 PRSS55Q6UWB4 352 aaPredicted RBP13.56□□□□□ -0.24
COL4A1-201ENST00000375820 SERPINA9Q86WD7 417 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 RIPOR3Q96MK2 946 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 PNO1Q9NRX1 252 aaKnown RBP13.56□□□□□ -0.24
COL4A1-201ENST00000375820 RGS17Q9UGC6 210 aaPredicted RBP13.56□□□□□ -0.24
COL4A1-201ENST00000375820 CDH7Q9ULB5 785 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 PXDNQ92626 1479 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 ITSN1Q15811 1721 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 ANGPTL1O95841 491 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 THRBP10828 461 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 CHIT1Q13231 466 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 PUM1Q14671 1186 aaKnown RBP eCLIP13.56□□□□□ -0.24
COL4A1-201ENST00000375820 TMEM220Q6QAJ8 160 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 POTEHQ6S545 545 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 CBR4Q8N4T8 237 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 LCN9Q8WX39 176 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 BSNDQ8WZ55 320 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 MED28Q9H204 178 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 ZNF221Q9UK13 617 aa13.56□□□□□ -0.24
COL4A1-201ENST00000375820 PRPF19Q9UMS4 504 aaKnown RBP13.56□□□□□ -0.24
COL4A1-201ENST00000375820 SLC15A5A6NIM6 579 aa13.55□□□□□ -0.24
COL4A1-201ENST00000375820 PIP5K1BO14986 540 aa13.55□□□□□ -0.24
COL4A1-201ENST00000375820 FMO3P31513 532 aa13.55□□□□□ -0.24
COL4A1-201ENST00000375820 CRHR1P34998 444 aa13.55□□□□□ -0.24
COL4A1-201ENST00000375820 ACTR3P61158 418 aa13.55□□□□□ -0.24
COL4A1-201ENST00000375820 CACNG1Q06432 222 aa13.55□□□□□ -0.24
COL4A1-201ENST00000375820 ARSHQ5FYA8 562 aa13.55□□□□□ -0.24
COL4A1-201ENST00000375820 MED27Q6P2C8 311 aa13.55□□□□□ -0.24
COL4A1-201ENST00000375820 TNFAIP8L2Q6P589 184 aaPredicted RBP13.55□□□□□ -0.24
COL4A1-201ENST00000375820 KLHL35Q6PF15 583 aa13.55□□□□□ -0.24
COL4A1-201ENST00000375820 ZNF627Q7L945 461 aa13.55□□□□□ -0.24
COL4A1-201ENST00000375820 C7orf61Q8IZ16 206 aa13.55□□□□□ -0.24
COL4A1-201ENST00000375820 OR6K6Q8NGW6 343 aa13.55□□□□□ -0.24
COL4A1-201ENST00000375820 PTPRUQ92729 1446 aa13.55□□□□□ -0.24
COL4A1-201ENST00000375820 AGXT2Q9BYV1 514 aa13.55□□□□□ -0.24
COL4A1-201ENST00000375820 RNF121Q9H920 327 aa13.55□□□□□ -0.24
COL4A1-201ENST00000375820 C8orf4Q9NR00 106 aa13.55□□□□□ -0.24
COL4A1-201ENST00000375820 GDI2P50395 445 aaKnown RBP13.55□□□□□ -0.24
COL4A1-201ENST00000375820 DRG2P55039 364 aaKnown RBP13.55□□□□□ -0.24
COL4A1-201ENST00000375820 ARL13AQ5H913 290 aaPredicted RBP13.55□□□□□ -0.24
COL4A1-201ENST00000375820 CLEC12AQ5QGZ9 265 aa13.55□□□□□ -0.24
COL4A1-201ENST00000375820 GALNT7Q86SF2 657 aa13.55□□□□□ -0.24
COL4A1-201ENST00000375820 TRPV5Q9NQA5 729 aa13.55□□□□□ -0.24
COL4A1-201ENST00000375820 TVP23BQ9NYZ1 205 aa13.55□□□□□ -0.24
COL4A1-201ENST00000375820 PTCH2Q9Y6C5 1203 aa13.55□□□□□ -0.24
COL4A1-201ENST00000375820 COLEC10Q9Y6Z7 277 aa13.55□□□□□ -0.24
COL4A1-201ENST00000375820 COMMD3-BMI1R4GMX3 469 aa13.55□□□□□ -0.24
COL4A1-201ENST00000375820 STK16O75716 305 aa13.55□□□□□ -0.24
COL4A1-201ENST00000375820 IFI30P13284 250 aa13.55□□□□□ -0.24
COL4A1-201ENST00000375820 ZNF8P17098 575 aaPredicted RBP13.55□□□□□ -0.24
COL4A1-201ENST00000375820 CMPK1P30085 196 aa13.55□□□□□ -0.24
COL4A1-201ENST00000375820 NOMO1Q15155 1222 aa13.55□□□□□ -0.24
COL4A1-201ENST00000375820 CA9Q16790 459 aa13.55□□□□□ -0.24
COL4A1-201ENST00000375820 TCEAL6Q6IPX3 200 aa13.55□□□□□ -0.24
COL4A1-201ENST00000375820 CPNE9Q8IYJ1 553 aa13.55□□□□□ -0.24
COL4A1-201ENST00000375820 HOPXQ9BPY8 73 aaPredicted RBP13.55□□□□□ -0.24
COL4A1-201ENST00000375820 CCR3P51677 355 aa13.55□□□□□ -0.24
COL4A1-201ENST00000375820 ALG1LQ6GMV1 187 aa13.55□□□□□ -0.24
COL4A1-201ENST00000375820 TMEM214Q6NUQ4 689 aaKnown RBP13.55□□□□□ -0.24
COL4A1-201ENST00000375820 SPERTQ8NA61 448 aa13.55□□□□□ -0.24
COL4A1-201ENST00000375820 ARNTL2Q8WYA1 636 aa13.55□□□□□ -0.24
COL4A1-201ENST00000375820 SLC28A3Q9HAS3 691 aa13.55□□□□□ -0.24
COL4A1-201ENST00000375820 FKBPLQ9UIM3 349 aa13.55□□□□□ -0.24
COL4A1-201ENST00000375820 ZNF180Q9UJW8 692 aa13.55□□□□□ -0.24
COL4A1-201ENST00000375820 SMIM28A0A1B0GU29 152 aa13.55□□□□□ -0.24
COL4A1-201ENST00000375820 NME6O75414 186 aaPredicted RBP13.55□□□□□ -0.24
COL4A1-201ENST00000375820 MTTPP55157 894 aa13.55□□□□□ -0.24
COL4A1-201ENST00000375820 PPP3R1P63098 170 aa13.55□□□□□ -0.24
COL4A1-201ENST00000375820 E2F2Q14209 437 aa13.55□□□□□ -0.24
COL4A1-201ENST00000375820 RBM4BQ9BQ04 359 aaKnown RBP13.55□□□□□ -0.24
COL4A1-201ENST00000375820 RBM4Q9BWF3 364 aaKnown RBP13.55□□□□□ -0.24
COL4A1-201ENST00000375820 TAPBPLQ9BX59 468 aa13.55□□□□□ -0.24
COL4A1-201ENST00000375820 B3GNT4Q9C0J1 378 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms