RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 PRICKLE1Q96MT3 831 aaPredicted RBP11.44□□□□□ -0.58
SYNE1-204ENST00000367248 RPRD1BQ9NQG5 326 aaKnown RBP11.44□□□□□ -0.58
SYNE1-204ENST00000367248 RBM47A0AV96 593 aaKnown RBP11.44□□□□□ -0.58
SYNE1-204ENST00000367248 MBLAC1A4D2B0 266 aaPredicted RBP11.44□□□□□ -0.58
SYNE1-204ENST00000367248 PRR5-ARHGAP8B1AHC4 643 aa11.44□□□□□ -0.58
SYNE1-204ENST00000367248 TK2O00142 265 aa11.44□□□□□ -0.58
SYNE1-204ENST00000367248 CLDN4O14493 209 aa11.44□□□□□ -0.58
SYNE1-204ENST00000367248 KRT8P05787 483 aa11.44□□□□□ -0.58
SYNE1-204ENST00000367248 HOXA11P31270 313 aaPredicted RBP11.44□□□□□ -0.58
SYNE1-204ENST00000367248 MLLT3P42568 568 aaPredicted RBP11.44□□□□□ -0.58
SYNE1-204ENST00000367248 CCNHP51946 323 aaPredicted RBP11.44□□□□□ -0.58
SYNE1-204ENST00000367248 ARHGAP8P85298 464 aa11.44□□□□□ -0.58
SYNE1-204ENST00000367248 KLF10Q13118 480 aa11.44□□□□□ -0.58
SYNE1-204ENST00000367248 ZNF776Q68DI1 518 aaPredicted RBP11.44□□□□□ -0.58
SYNE1-204ENST00000367248 S100A13Q99584 98 aa11.44□□□□□ -0.58
SYNE1-204ENST00000367248 C8GP07360 202 aa11.44□□□□□ -0.58
SYNE1-204ENST00000367248 ZNF24P17028 368 aa11.44□□□□□ -0.58
SYNE1-204ENST00000367248 DEFA1P59665 94 aa11.44□□□□□ -0.58
SYNE1-204ENST00000367248 DEFA3P59666 94 aa11.44□□□□□ -0.58
SYNE1-204ENST00000367248 LAPTM5Q13571 262 aa11.44□□□□□ -0.58
SYNE1-204ENST00000367248 PON2Q15165 354 aa11.44□□□□□ -0.58
SYNE1-204ENST00000367248 METTL21CQ5VZV1 264 aa11.44□□□□□ -0.58
SYNE1-204ENST00000367248 TWIST2Q8WVJ9 160 aa11.44□□□□□ -0.58
SYNE1-204ENST00000367248 ESAMQ96AP7 390 aa11.44□□□□□ -0.58
SYNE1-204ENST00000367248 RBM18Q96H35 190 aaKnown RBP11.44□□□□□ -0.58
SYNE1-204ENST00000367248 LZTS1Q9Y250 596 aa11.44□□□□□ -0.58
SYNE1-204ENST00000367248 ARL5AQ9Y689 179 aa11.44□□□□□ -0.58
SYNE1-204ENST00000367248 CLPTM1O96005 669 aa11.44□□□□□ -0.58
SYNE1-204ENST00000367248 ANXA4P09525 319 aaPredicted RBP11.44□□□□□ -0.58
SYNE1-204ENST00000367248 ITGA2P17301 1181 aa11.44□□□□□ -0.58
SYNE1-204ENST00000367248 PLEKHG6Q3KR16 790 aa11.44□□□□□ -0.58
SYNE1-204ENST00000367248 MED27Q6P2C8 311 aa11.44□□□□□ -0.58
SYNE1-204ENST00000367248 C22orf39Q6P5X5 142 aa11.44□□□□□ -0.58
SYNE1-204ENST00000367248 SPESP1Q6UW49 350 aa11.44□□□□□ -0.58
SYNE1-204ENST00000367248 SPATA19Q7Z5L4 167 aa11.44□□□□□ -0.58
SYNE1-204ENST00000367248 AMZ2Q86W34 360 aa11.44□□□□□ -0.58
SYNE1-204ENST00000367248 OR10T2Q8NGX3 314 aa11.44□□□□□ -0.58
SYNE1-204ENST00000367248 AGAP2Q99490 1192 aa11.44□□□□□ -0.58
SYNE1-204ENST00000367248 GNEQ9Y223 722 aaKnown RBP11.44□□□□□ -0.58
SYNE1-204ENST00000367248 BBIP1A8MTZ0 92 aa11.44□□□□□ -0.58
SYNE1-204ENST00000367248 NRP2O60462 931 aa11.44□□□□□ -0.58
SYNE1-204ENST00000367248 PSMB9P28065 219 aa11.44□□□□□ -0.58
SYNE1-204ENST00000367248 PLGLB1Q02325 96 aa11.44□□□□□ -0.58
SYNE1-204ENST00000367248 MYLK3Q32MK0 819 aa11.44□□□□□ -0.58
SYNE1-204ENST00000367248 ZNF248Q8NDW4 579 aa11.44□□□□□ -0.58
SYNE1-204ENST00000367248 JPH3Q8WXH2 748 aaPredicted RBP11.44□□□□□ -0.58
SYNE1-204ENST00000367248 C19orf60Q96EN9 201 aa11.44□□□□□ -0.58
SYNE1-204ENST00000367248 HEPACAM2A8MVW5 462 aa11.44□□□□□ -0.58
SYNE1-204ENST00000367248 RFXAPO00287 272 aa11.44□□□□□ -0.58
SYNE1-204ENST00000367248 SAP18O00422 153 aaKnown RBP11.44□□□□□ -0.58
SYNE1-204ENST00000367248 PEX1O43933 1283 aa11.44□□□□□ -0.58
SYNE1-204ENST00000367248 PDE9AO76083 593 aa11.44□□□□□ -0.58
SYNE1-204ENST00000367248 TIMP1P01033 207 aa11.44□□□□□ -0.58
SYNE1-204ENST00000367248 HNRNPA1P09651 372 aaKnown RBP eCLIP11.44□□□□□ -0.58
SYNE1-204ENST00000367248 SLC35G6P0C7Q6 338 aa11.44□□□□□ -0.58
SYNE1-204ENST00000367248 ASMTP46597 345 aa11.44□□□□□ -0.58
SYNE1-204ENST00000367248 BTN2A1Q7KYR7 527 aa11.44□□□□□ -0.58
SYNE1-204ENST00000367248 ADGRG6Q86SQ4 1221 aa11.44□□□□□ -0.58
SYNE1-204ENST00000367248 OR2T12Q8NG77 320 aa11.44□□□□□ -0.58
SYNE1-204ENST00000367248 OR4A15Q8NGL6 344 aa11.44□□□□□ -0.58
SYNE1-204ENST00000367248 ZNF354BQ96LW1 612 aa11.44□□□□□ -0.58
SYNE1-204ENST00000367248 REXO4Q9GZR2 422 aaKnown RBP11.44□□□□□ -0.58
SYNE1-204ENST00000367248 SFXN1Q9H9B4 322 aa11.44□□□□□ -0.58
SYNE1-204ENST00000367248 TBC1D23Q9NUY8 699 aa11.44□□□□□ -0.58
SYNE1-204ENST00000367248 DDX18Q9NVP1 670 aaKnown RBP11.44□□□□□ -0.58
SYNE1-204ENST00000367248 BACE2Q9Y5Z0 518 aa11.44□□□□□ -0.58
SYNE1-204ENST00000367248 EDDM13A0A1B0GTR0 161 aa11.43□□□□□ -0.58
SYNE1-204ENST00000367248 H3BNH8 94 aa11.43□□□□□ -0.58
SYNE1-204ENST00000367248 EFNA1P20827 205 aaPredicted RBP11.43□□□□□ -0.58
SYNE1-204ENST00000367248 SMIM11AP58511 58 aa11.43□□□□□ -0.58
SYNE1-204ENST00000367248 ZDHHC24Q6UX98 284 aa11.43□□□□□ -0.58
SYNE1-204ENST00000367248 LYSMD3Q7Z3D4 306 aa11.43□□□□□ -0.58
SYNE1-204ENST00000367248 CADM2Q8N3J6 435 aa11.43□□□□□ -0.58
SYNE1-204ENST00000367248 FBXW8Q8N3Y1 598 aa11.43□□□□□ -0.58
SYNE1-204ENST00000367248 IL22RA1Q8N6P7 574 aa11.43□□□□□ -0.58
SYNE1-204ENST00000367248 PQLC3Q8N755 202 aa11.43□□□□□ -0.58
SYNE1-204ENST00000367248 NAT8LQ8N9F0 302 aa11.43□□□□□ -0.58
SYNE1-204ENST00000367248 POP5Q969H6 163 aaKnown RBP11.43□□□□□ -0.58
SYNE1-204ENST00000367248 HCN3Q9P1Z3 774 aa11.43□□□□□ -0.58
SYNE1-204ENST00000367248 A0A0J9YYE9 177 aa11.43□□□□□ -0.58
SYNE1-204ENST00000367248 PRKCHP24723 683 aa11.43□□□□□ -0.58
SYNE1-204ENST00000367248 ZNF33AQ06730 810 aa11.43□□□□□ -0.58
SYNE1-204ENST00000367248 RTP2Q5QGT7 225 aa11.43□□□□□ -0.58
SYNE1-204ENST00000367248 TTC23Q5W5X9 447 aa11.43□□□□□ -0.58
SYNE1-204ENST00000367248 LPCAT2Q7L5N7 544 aa11.43□□□□□ -0.58
SYNE1-204ENST00000367248 CPSF7Q8N684 471 aaKnown RBP11.43□□□□□ -0.58
SYNE1-204ENST00000367248 EPB41L4BQ9H329 900 aa11.43□□□□□ -0.58
SYNE1-204ENST00000367248 SEMA3GQ9NS98 782 aa11.43□□□□□ -0.58
SYNE1-204ENST00000367248 TPRKBQ9Y3C4 175 aa11.43□□□□□ -0.58
SYNE1-204ENST00000367248 A0A0J9YVX5 310 aa11.43□□□□□ -0.58
SYNE1-204ENST00000367248 OR51F1A6NGY5 319 aa11.43□□□□□ -0.58
SYNE1-204ENST00000367248 C9J4A7 227 aa11.43□□□□□ -0.58
SYNE1-204ENST00000367248 OR4F21O95013 312 aa11.43□□□□□ -0.58
SYNE1-204ENST00000367248 AQP1P29972 269 aa11.43□□□□□ -0.58
SYNE1-204ENST00000367248 PNLIPRP1P54315 467 aa11.43□□□□□ -0.58
SYNE1-204ENST00000367248 PLEKHG4Q58EX7 1191 aa11.43□□□□□ -0.58
SYNE1-204ENST00000367248 OR5M3Q8NGP4 307 aa11.43□□□□□ -0.58
SYNE1-204ENST00000367248 SIN3BO75182 1162 aa11.43□□□□□ -0.58
SYNE1-204ENST00000367248 IDH2P48735 452 aaKnown RBP11.43□□□□□ -0.58
SYNE1-204ENST00000367248 IL23RQ5VWK5 629 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms