RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 ACAD11Q709F0 780 aa9.05□□□□□ -0.96
UPF2-202ENST00000357604 NUDCD3Q8IVD9 361 aa9.05□□□□□ -0.96
UPF2-202ENST00000357604 MINDY1Q8N5J2 469 aa9.05□□□□□ -0.96
UPF2-202ENST00000357604 TMEM105Q8N8V8 129 aa9.05□□□□□ -0.96
UPF2-202ENST00000357604 DTX3LQ8TDB6 740 aa9.05□□□□□ -0.96
UPF2-202ENST00000357604 PIH1D2Q8WWB5 315 aa9.05□□□□□ -0.96
UPF2-202ENST00000357604 PLXNA4Q9HCM2 1894 aa9.05□□□□□ -0.96
UPF2-202ENST00000357604 POT1Q9NUX5 634 aa9.05□□□□□ -0.96
UPF2-202ENST00000357604 ABI3Q9P2A4 366 aa9.05□□□□□ -0.96
UPF2-202ENST00000357604 KCNK6Q9Y257 313 aa9.05□□□□□ -0.96
UPF2-202ENST00000357604 MTF2Q9Y483 593 aaPredicted RBP9.05□□□□□ -0.96
UPF2-202ENST00000357604 OR1A2Q9Y585 309 aa9.05□□□□□ -0.96
UPF2-202ENST00000357604 A0A0U1RQJ8 604 aa9.04□□□□□ -0.96
UPF2-202ENST00000357604 SYNDIG1LA6NDD5 238 aa9.04□□□□□ -0.96
UPF2-202ENST00000357604 ARL14Q8N4G2 192 aa9.04□□□□□ -0.96
UPF2-202ENST00000357604 ARL10Q8N8L6 244 aa9.04□□□□□ -0.96
UPF2-202ENST00000357604 NAT8LQ8N9F0 302 aa9.04□□□□□ -0.96
UPF2-202ENST00000357604 PRPF18Q99633 342 aaKnown RBP9.04□□□□□ -0.96
UPF2-202ENST00000357604 TRNAU1APQ9NX07 287 aaKnown RBP9.04□□□□□ -0.96
UPF2-202ENST00000357604 KCNE2Q9Y6J6 123 aa9.04□□□□□ -0.96
UPF2-202ENST00000357604 COPAP53621 1224 aa9.04□□□□□ -0.96
UPF2-202ENST00000357604 CRADDP78560 199 aa9.04□□□□□ -0.96
UPF2-202ENST00000357604 HHEXQ03014 270 aa9.04□□□□□ -0.96
UPF2-202ENST00000357604 ACY1Q03154 408 aa9.04□□□□□ -0.96
UPF2-202ENST00000357604 FOXM1Q08050 763 aa9.04□□□□□ -0.96
UPF2-202ENST00000357604 CYP20A1Q6UW02 462 aa9.04□□□□□ -0.96
UPF2-202ENST00000357604 TBC1D21Q8IYX1 336 aa9.04□□□□□ -0.96
UPF2-202ENST00000357604 AADATQ8N5Z0 425 aa9.04□□□□□ -0.96
UPF2-202ENST00000357604 SRFBP1Q8NEF9 429 aaKnown RBP9.04□□□□□ -0.96
UPF2-202ENST00000357604 BIRC7Q96CA5 298 aa9.04□□□□□ -0.96
UPF2-202ENST00000357604 LGR4Q9BXB1 951 aa9.04□□□□□ -0.96
UPF2-202ENST00000357604 PADI4Q9UM07 663 aa9.04□□□□□ -0.96
UPF2-202ENST00000357604 MRPS33Q9Y291 106 aaKnown RBP9.04□□□□□ -0.96
UPF2-202ENST00000357604 PI15O43692 258 aa9.04□□□□□ -0.96
UPF2-202ENST00000357604 IGHEP01854 428 aa9.04□□□□□ -0.96
UPF2-202ENST00000357604 KLK3P07288 261 aaPredicted RBP9.04□□□□□ -0.96
UPF2-202ENST00000357604 ABATP80404 500 aa9.04□□□□□ -0.96
UPF2-202ENST00000357604 SEMG2Q02383 582 aa9.04□□□□□ -0.96
UPF2-202ENST00000357604 MAD2L1Q13257 205 aaPredicted RBP9.04□□□□□ -0.96
UPF2-202ENST00000357604 RBBP5Q15291 538 aaKnown RBP9.04□□□□□ -0.96
UPF2-202ENST00000357604 DEFB133Q30KQ1 61 aa9.04□□□□□ -0.96
UPF2-202ENST00000357604 AGBL2Q5U5Z8 902 aa9.04□□□□□ -0.96
UPF2-202ENST00000357604 SULT1C3Q6IMI6 304 aa9.04□□□□□ -0.96
UPF2-202ENST00000357604 KIAA1211LQ6NV74 962 aa9.04□□□□□ -0.96
UPF2-202ENST00000357604 GPR150Q8NGU9 434 aa9.04□□□□□ -0.96
UPF2-202ENST00000357604 STARD8Q92502 1023 aa9.04□□□□□ -0.96
UPF2-202ENST00000357604 OXNAD1Q96HP4 312 aaPredicted RBP9.04□□□□□ -0.96
UPF2-202ENST00000357604 COL25A1Q9BXS0 654 aaPredicted RBP9.04□□□□□ -0.96
UPF2-202ENST00000357604 PSMD13Q9UNM6 376 aa9.04□□□□□ -0.96
UPF2-202ENST00000357604 PADI2Q9Y2J8 665 aa9.04□□□□□ -0.96
UPF2-202ENST00000357604 OR51B4Q9Y5P0 310 aa9.04□□□□□ -0.96
UPF2-202ENST00000357604 ACTL7AQ9Y615 435 aa9.04□□□□□ -0.96
UPF2-202ENST00000357604 RIPK2O43353 540 aa9.04□□□□□ -0.96
UPF2-202ENST00000357604 SGTAO43765 313 aa9.04□□□□□ -0.96
UPF2-202ENST00000357604 GUCA1CO95843 209 aa9.04□□□□□ -0.96
UPF2-202ENST00000357604 ACSL1P33121 698 aa9.04□□□□□ -0.96
UPF2-202ENST00000357604 AP1S2P56377 157 aa9.04□□□□□ -0.96
UPF2-202ENST00000357604 CLDN2P57739 230 aa9.04□□□□□ -0.96
UPF2-202ENST00000357604 FRG1Q14331 258 aaKnown RBP9.04□□□□□ -0.96
UPF2-202ENST00000357604 ZNF423Q2M1K9 1284 aa9.04□□□□□ -0.96
UPF2-202ENST00000357604 WDR93Q6P2C0 686 aa9.04□□□□□ -0.96
UPF2-202ENST00000357604 CNSTQ6PJW8 725 aa9.04□□□□□ -0.96
UPF2-202ENST00000357604 PAGE2Q7Z2X7 111 aa9.04□□□□□ -0.96
UPF2-202ENST00000357604 LSMEM2Q8N112 164 aa9.04□□□□□ -0.96
UPF2-202ENST00000357604 MGARPQ8TDB4 240 aa9.04□□□□□ -0.96
UPF2-202ENST00000357604 CAVIN3Q969G5 261 aa9.04□□□□□ -0.96
UPF2-202ENST00000357604 MIPEPQ99797 713 aa9.04□□□□□ -0.96
UPF2-202ENST00000357604 MKRN2Q9H000 416 aaKnown RBP9.04□□□□□ -0.96
UPF2-202ENST00000357604 L2HGDHQ9H9P8 463 aa9.04□□□□□ -0.96
UPF2-202ENST00000357604 KLHL42Q9P2K6 505 aa9.04□□□□□ -0.96
UPF2-202ENST00000357604 SNX6Q9UNH7 406 aa9.04□□□□□ -0.96
UPF2-202ENST00000357604 SCN1AP35498 2009 aa9.04□□□□□ -0.96
UPF2-202ENST00000357604 LOC105378220A0A1B0GUY1 285 aaPredicted RBP9.03□□□□□ -0.96
UPF2-202ENST00000357604 NCF1BA6NI72 391 aaPredicted RBP9.03□□□□□ -0.96
UPF2-202ENST00000357604 NCF1CA8MVU1 366 aaPredicted RBP9.03□□□□□ -0.96
UPF2-202ENST00000357604 RRP8O43159 456 aaKnown RBP9.03□□□□□ -0.96
UPF2-202ENST00000357604 NCF1P14598 390 aaPredicted RBP9.03□□□□□ -0.96
UPF2-202ENST00000357604 ENGP17813 658 aa9.03□□□□□ -0.96
UPF2-202ENST00000357604 VARSP26640 1264 aaKnown RBP9.03□□□□□ -0.96
UPF2-202ENST00000357604 CD68P34810 354 aaPredicted RBP9.03□□□□□ -0.96
UPF2-202ENST00000357604 ATP13A5Q4VNC0 1218 aa9.03□□□□□ -0.96
UPF2-202ENST00000357604 PACS1Q6VY07 963 aa9.03□□□□□ -0.96
UPF2-202ENST00000357604 RBM44Q6ZP01 1051 aaKnown RBP9.03□□□□□ -0.96
UPF2-202ENST00000357604 NEK10Q6ZWH5 1172 aa9.03□□□□□ -0.96
UPF2-202ENST00000357604 OR2L2Q8NH16 312 aa9.03□□□□□ -0.96
UPF2-202ENST00000357604 ZFPM2Q8WW38 1151 aa9.03□□□□□ -0.96
UPF2-202ENST00000357604 SMPDL3AQ92484 453 aa9.03□□□□□ -0.96
UPF2-202ENST00000357604 NCSTNQ92542 709 aa9.03□□□□□ -0.96
UPF2-202ENST00000357604 GRAMD1AQ96CP6 724 aa9.03□□□□□ -0.96
UPF2-202ENST00000357604 ZNF419Q96HQ0 510 aaPredicted RBP9.03□□□□□ -0.96
UPF2-202ENST00000357604 MRPL57Q9BQC6 102 aaKnown RBP9.03□□□□□ -0.96
UPF2-202ENST00000357604 ARNT2Q9HBZ2 717 aa9.03□□□□□ -0.96
UPF2-202ENST00000357604 TAAR2Q9P1P5 351 aa9.03□□□□□ -0.96
UPF2-202ENST00000357604 SNX7Q9UNH6 387 aa9.03□□□□□ -0.96
UPF2-202ENST00000357604 TRIM33Q9UPN9 1127 aa9.03□□□□□ -0.96
UPF2-202ENST00000357604 PCDHGB2Q9Y5G2 931 aa9.03□□□□□ -0.96
UPF2-202ENST00000357604 VPS4BO75351 444 aa9.03□□□□□ -0.96
UPF2-202ENST00000357604 STXBP1P61764 594 aaKnown RBP9.03□□□□□ -0.96
UPF2-202ENST00000357604 DBN1Q16643 649 aa9.03□□□□□ -0.96
UPF2-202ENST00000357604 HLA-BQ31612 363 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms