RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 ITGALP20701 1170 aa18■□□□□ 0.47
CLN3-202ENST00000355477 FDFT1P37268 417 aa18■□□□□ 0.47
CLN3-202ENST00000355477 TSPAN7P41732 249 aa18■□□□□ 0.47
CLN3-202ENST00000355477 HALP42357 657 aa18■□□□□ 0.47
CLN3-202ENST00000355477 LEPRP48357 1165 aaKnown RBP18■□□□□ 0.47
CLN3-202ENST00000355477 GPR33Q49SQ1 333 aa18■□□□□ 0.47
CLN3-202ENST00000355477 CCDC38Q502W7 563 aa18■□□□□ 0.47
CLN3-202ENST00000355477 ZRANB3Q5FWF4 1079 aa18■□□□□ 0.47
CLN3-202ENST00000355477 ANKS6Q68DC2 871 aa18■□□□□ 0.47
CLN3-202ENST00000355477 INO80CQ6PI98 192 aaPredicted RBP18■□□□□ 0.47
CLN3-202ENST00000355477 PCSK4Q6UW60 755 aa18■□□□□ 0.47
CLN3-202ENST00000355477 CCDC81Q6ZN84 652 aa18■□□□□ 0.47
CLN3-202ENST00000355477 LINC00523Q86TU6 105 aa18■□□□□ 0.47
CLN3-202ENST00000355477 SERPINA9Q86WD7 417 aa18■□□□□ 0.47
CLN3-202ENST00000355477 PIANPQ8IYJ0 282 aa18■□□□□ 0.47
CLN3-202ENST00000355477 SPDYE1Q8NFV5 336 aaPredicted RBP18■□□□□ 0.47
CLN3-202ENST00000355477 STYXQ8WUJ0 223 aa18■□□□□ 0.47
CLN3-202ENST00000355477 JPH3Q8WXH2 748 aaPredicted RBP18■□□□□ 0.47
CLN3-202ENST00000355477 RSC1A1Q92681 617 aa18■□□□□ 0.47
CLN3-202ENST00000355477 DCUN1D1Q96GG9 259 aa18■□□□□ 0.47
CLN3-202ENST00000355477 LINC00615Q96LM1 132 aaPredicted RBP18■□□□□ 0.47
CLN3-202ENST00000355477 C9orf72Q96LT7 481 aa18■□□□□ 0.47
CLN3-202ENST00000355477 INSM2Q96T92 566 aaPredicted RBP18■□□□□ 0.47
CLN3-202ENST00000355477 COPS8Q99627 209 aa18■□□□□ 0.47
CLN3-202ENST00000355477 WWP1Q9H0M0 922 aa18■□□□□ 0.47
CLN3-202ENST00000355477 ZDHHC3Q9NYG2 299 aa18■□□□□ 0.47
CLN3-202ENST00000355477 CFAP20Q9Y6A4 193 aaKnown RBP18■□□□□ 0.47
CLN3-202ENST00000355477 IGLV3-16A0A075B6K0 115 aa17.99■□□□□ 0.47
CLN3-202ENST00000355477 ERI2A8K979 691 aaKnown RBP17.99■□□□□ 0.47
CLN3-202ENST00000355477 IQCJ-SCHIP1C9J366 451 aaPredicted RBP17.99■□□□□ 0.47
CLN3-202ENST00000355477 CAPN5O15484 640 aaPredicted RBP17.99■□□□□ 0.47
CLN3-202ENST00000355477 SUN1O94901 812 aa17.99■□□□□ 0.47
CLN3-202ENST00000355477 FGGP02679 453 aa17.99■□□□□ 0.47
CLN3-202ENST00000355477 ATP1B2P14415 290 aaPredicted RBP17.99■□□□□ 0.47
CLN3-202ENST00000355477 PSMA3P25788 255 aa17.99■□□□□ 0.47
CLN3-202ENST00000355477 ACRV1P26436 265 aa17.99■□□□□ 0.47
CLN3-202ENST00000355477 CD82P27701 267 aa17.99■□□□□ 0.47
CLN3-202ENST00000355477 CXCR5P32302 372 aa17.99■□□□□ 0.47
CLN3-202ENST00000355477 MC2RQ01718 297 aa17.99■□□□□ 0.47
CLN3-202ENST00000355477 CCNG2Q16589 344 aa17.99■□□□□ 0.47
CLN3-202ENST00000355477 VASH2Q86V25 355 aa17.99■□□□□ 0.47
CLN3-202ENST00000355477 RBM12BQ8IXT5 1001 aaKnown RBP17.99■□□□□ 0.47
CLN3-202ENST00000355477 TRIM58Q8NG06 486 aa17.99■□□□□ 0.47
CLN3-202ENST00000355477 TGM7Q96PF1 710 aa17.99■□□□□ 0.47
CLN3-202ENST00000355477 DDA1Q9BW61 102 aa17.99■□□□□ 0.47
CLN3-202ENST00000355477 RAB6BQ9NRW1 208 aa17.99■□□□□ 0.47
CLN3-202ENST00000355477 KIF1CO43896 1103 aaKnown RBP17.98■□□□□ 0.47
CLN3-202ENST00000355477 POLBP06746 335 aa17.98■□□□□ 0.47
CLN3-202ENST00000355477 RALBP11234 206 aa17.98■□□□□ 0.47
CLN3-202ENST00000355477 MTHFD1P11586 935 aaKnown RBP17.98■□□□□ 0.47
CLN3-202ENST00000355477 RPL22P35268 128 aaKnown RBP17.98■□□□□ 0.47
CLN3-202ENST00000355477 PRLHRP49683 370 aa17.98■□□□□ 0.47
CLN3-202ENST00000355477 CDH17Q12864 832 aa17.98■□□□□ 0.47
CLN3-202ENST00000355477 SEMA5AQ13591 1074 aa17.98■□□□□ 0.47
CLN3-202ENST00000355477 KCTD19Q17RG1 926 aaPredicted RBP17.98■□□□□ 0.47
CLN3-202ENST00000355477 DCAF12Q5T6F0 453 aa17.98■□□□□ 0.47
CLN3-202ENST00000355477 DUS1LQ6P1R4 473 aaKnown RBP17.98■□□□□ 0.47
CLN3-202ENST00000355477 TAS2R42Q7RTR8 314 aa17.98■□□□□ 0.47
CLN3-202ENST00000355477 CFAP206Q8IYR0 622 aa17.98■□□□□ 0.47
CLN3-202ENST00000355477 DNAAF3Q8N9W5 541 aa17.98■□□□□ 0.47
CLN3-202ENST00000355477 HEXDCQ8WVB3 486 aa17.98■□□□□ 0.47
CLN3-202ENST00000355477 CTRCQ99895 268 aa17.98■□□□□ 0.47
CLN3-202ENST00000355477 APMAPQ9HDC9 416 aa17.98■□□□□ 0.47
CLN3-202ENST00000355477 FBXO8Q9NRD0 319 aa17.98■□□□□ 0.47
CLN3-202ENST00000355477 IMP3Q9NV31 184 aaKnown RBP17.98■□□□□ 0.47
CLN3-202ENST00000355477 ACSL5Q9ULC5 683 aa17.98■□□□□ 0.47
CLN3-202ENST00000355477 DRG1Q9Y295 367 aaKnown RBP17.98■□□□□ 0.47
CLN3-202ENST00000355477 OR51F1A6NGY5 319 aa17.97■□□□□ 0.47
CLN3-202ENST00000355477 E7EVH7 732 aa17.97■□□□□ 0.47
CLN3-202ENST00000355477 STMND1H3BQB6 276 aa17.97■□□□□ 0.47
CLN3-202ENST00000355477 ATXN7O15265 892 aaPredicted RBP17.97■□□□□ 0.47
CLN3-202ENST00000355477 CEP104O60308 925 aa17.97■□□□□ 0.47
CLN3-202ENST00000355477 ANKRD34CP0C6C1 535 aa17.97■□□□□ 0.47
CLN3-202ENST00000355477 WT1P19544 449 aaPredicted RBP17.97■□□□□ 0.47
CLN3-202ENST00000355477 CAPZBP47756 277 aa17.97■□□□□ 0.47
CLN3-202ENST00000355477 LMAN1P49257 510 aa17.97■□□□□ 0.47
CLN3-202ENST00000355477 PPP1CAP62136 330 aa17.97■□□□□ 0.47
CLN3-202ENST00000355477 CACNG1Q06432 222 aa17.97■□□□□ 0.47
CLN3-202ENST00000355477 DBN1Q16643 649 aa17.97■□□□□ 0.47
CLN3-202ENST00000355477 ZNF658BQ4V348 819 aaPredicted RBP17.97■□□□□ 0.47
CLN3-202ENST00000355477 KIAA1614Q5VZ46 1190 aa17.97■□□□□ 0.47
CLN3-202ENST00000355477 DRICH1Q6PGQ1 229 aaPredicted RBP17.97■□□□□ 0.47
CLN3-202ENST00000355477 PPP1R21Q6ZMI0 780 aa17.97■□□□□ 0.47
CLN3-202ENST00000355477 CLDN19Q8N6F1 224 aa17.97■□□□□ 0.47
CLN3-202ENST00000355477 CCDC89Q8N998 374 aa17.97■□□□□ 0.47
CLN3-202ENST00000355477 NKD1Q969G9 470 aa17.97■□□□□ 0.47
CLN3-202ENST00000355477 RMDN2Q96LZ7 410 aa17.97■□□□□ 0.47
CLN3-202ENST00000355477 C12orf66Q96MD2 445 aa17.97■□□□□ 0.47
CLN3-202ENST00000355477 ASPSCR1Q9BZE9 553 aa17.97■□□□□ 0.47
CLN3-202ENST00000355477 SPRY4Q9C004 299 aa17.97■□□□□ 0.47
CLN3-202ENST00000355477 CASS4Q9NQ75 786 aa17.97■□□□□ 0.47
CLN3-202ENST00000355477 SLC2A6Q9UGQ3 507 aa17.97■□□□□ 0.47
CLN3-202ENST00000355477 PCDHB11Q9Y5F2 797 aa17.97■□□□□ 0.47
CLN3-202ENST00000355477 GCN1Q92616 2671 aaKnown RBP17.96■□□□□ 0.47
CLN3-202ENST00000355477 CCDC162PA2VCL2 907 aa17.96■□□□□ 0.47
CLN3-202ENST00000355477 KLHL33A6NCF5 533 aa17.96■□□□□ 0.47
CLN3-202ENST00000355477 CFAP99D6REC4 459 aa17.96■□□□□ 0.47
CLN3-202ENST00000355477 APRTP07741 180 aa17.96■□□□□ 0.47
CLN3-202ENST00000355477 MSNP26038 577 aaKnown RBP17.96■□□□□ 0.47
CLN3-202ENST00000355477 KCNJ1P48048 391 aa17.96■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms