RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 TCF7L1Q9HCS4 588 aa13.16□□□□□ -0.3
COL6A3-202ENST00000347401 SCP2D1Q9UJQ7 156 aa13.16□□□□□ -0.3
COL6A3-202ENST00000347401 CDH10Q9Y6N8 788 aa13.16□□□□□ -0.3
COL6A3-202ENST00000347401 TBX1O43435 398 aa13.16□□□□□ -0.3
COL6A3-202ENST00000347401 CDC25CP30307 473 aa13.16□□□□□ -0.3
COL6A3-202ENST00000347401 RGS8P57771 180 aaPredicted RBP13.16□□□□□ -0.3
COL6A3-202ENST00000347401 CYP1B1Q16678 543 aa13.16□□□□□ -0.3
COL6A3-202ENST00000347401 REP15Q6BDI9 236 aa13.16□□□□□ -0.3
COL6A3-202ENST00000347401 HAGHLQ6PII5 290 aaPredicted RBP13.16□□□□□ -0.3
COL6A3-202ENST00000347401 C1orf186Q6ZWK4 172 aa13.16□□□□□ -0.3
COL6A3-202ENST00000347401 ZBED6CLQ96FA7 236 aaPredicted RBP13.16□□□□□ -0.3
COL6A3-202ENST00000347401 PRICKLE1Q96MT3 831 aaPredicted RBP13.16□□□□□ -0.3
COL6A3-202ENST00000347401 SLC4A9Q96Q91 983 aa13.16□□□□□ -0.3
COL6A3-202ENST00000347401 IRF2BPLQ9H1B7 796 aa13.16□□□□□ -0.3
COL6A3-202ENST00000347401 SHPRHQ149N8 1683 aa13.16□□□□□ -0.3
COL6A3-202ENST00000347401 F8VP50 259 aa13.16□□□□□ -0.3
COL6A3-202ENST00000347401 KRT33AO76009 404 aa13.16□□□□□ -0.3
COL6A3-202ENST00000347401 SLITRK3O94933 977 aa13.16□□□□□ -0.3
COL6A3-202ENST00000347401 C8GP07360 202 aa13.16□□□□□ -0.3
COL6A3-202ENST00000347401 THOP1P52888 689 aa13.16□□□□□ -0.3
COL6A3-202ENST00000347401 GBX2P52951 348 aaPredicted RBP13.16□□□□□ -0.3
COL6A3-202ENST00000347401 GXYLT1Q4G148 440 aa13.16□□□□□ -0.3
COL6A3-202ENST00000347401 ZNF767PQ75MW2 155 aa13.16□□□□□ -0.3
COL6A3-202ENST00000347401 FAM35AQ86V20 835 aa13.16□□□□□ -0.3
COL6A3-202ENST00000347401 KLHL6Q8WZ60 621 aa13.16□□□□□ -0.3
COL6A3-202ENST00000347401 ZSWIM3Q96MP5 696 aa13.16□□□□□ -0.3
COL6A3-202ENST00000347401 PCDHB16Q9NRJ7 776 aa13.16□□□□□ -0.3
COL6A3-202ENST00000347401 RDH8Q9NYR8 311 aa13.16□□□□□ -0.3
COL6A3-202ENST00000347401 PMF1-BGLAPU3KQ54 211 aa13.16□□□□□ -0.3
COL6A3-202ENST00000347401 SNRNP200O75643 2136 aaKnown RBP13.16□□□□□ -0.3
COL6A3-202ENST00000347401 LINC00032P0C843 101 aa13.16□□□□□ -0.3
COL6A3-202ENST00000347401 MMP8P22894 467 aa13.16□□□□□ -0.3
COL6A3-202ENST00000347401 RFX5P48382 616 aaPredicted RBP13.16□□□□□ -0.3
COL6A3-202ENST00000347401 DCDC1P59894 354 aa13.16□□□□□ -0.3
COL6A3-202ENST00000347401 TWIST2Q8WVJ9 160 aa13.16□□□□□ -0.3
COL6A3-202ENST00000347401 TCEAL3Q969E4 200 aa13.16□□□□□ -0.3
COL6A3-202ENST00000347401 DCSTAMPQ9H295 470 aa13.16□□□□□ -0.3
COL6A3-202ENST00000347401 SDK1Q7Z5N4 2213 aa13.16□□□□□ -0.3
COL6A3-202ENST00000347401 PORP16435 677 aaPredicted RBP13.16□□□□□ -0.3
COL6A3-202ENST00000347401 KELP23276 732 aa13.16□□□□□ -0.3
COL6A3-202ENST00000347401 CTBP2P56545 445 aa13.16□□□□□ -0.3
COL6A3-202ENST00000347401 ARMC10Q8N2F6 343 aa13.16□□□□□ -0.3
COL6A3-202ENST00000347401 NCSTNQ92542 709 aa13.16□□□□□ -0.3
COL6A3-202ENST00000347401 H3BRB1 525 aa13.16□□□□□ -0.3
COL6A3-202ENST00000347401 ZNF423Q2M1K9 1284 aa13.16□□□□□ -0.3
COL6A3-202ENST00000347401 ASTE1Q2TB18 679 aaPredicted RBP13.16□□□□□ -0.3
COL6A3-202ENST00000347401 ABCA11PQ4W5N1 156 aa13.16□□□□□ -0.3
COL6A3-202ENST00000347401 C7orf57Q8NEG2 295 aa13.16□□□□□ -0.3
COL6A3-202ENST00000347401 SIPA1Q96FS4 1042 aa13.16□□□□□ -0.3
COL6A3-202ENST00000347401 RIOK2Q9BVS4 552 aaKnown RBP13.16□□□□□ -0.3
COL6A3-202ENST00000347401 TUT1Q9H6E5 874 aaKnown RBP13.16□□□□□ -0.3
COL6A3-202ENST00000347401 ZNF318Q5VUA4 2279 aa13.15□□□□□ -0.3
COL6A3-202ENST00000347401 COL1A2P08123 1366 aa13.15□□□□□ -0.3
COL6A3-202ENST00000347401 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.15□□□□□ -0.3
COL6A3-202ENST00000347401 AOC1P19801 751 aa13.15□□□□□ -0.3
COL6A3-202ENST00000347401 TATDN1Q6P1N9 297 aa13.15□□□□□ -0.3
COL6A3-202ENST00000347401 LRRC70Q7Z2Q7 622 aa13.15□□□□□ -0.3
COL6A3-202ENST00000347401 REPS2Q8NFH8 660 aa13.15□□□□□ -0.3
COL6A3-202ENST00000347401 SMG7Q92540 1137 aaKnown RBP13.15□□□□□ -0.3
COL6A3-202ENST00000347401 FTHL17Q9BXU8 183 aa13.15□□□□□ -0.3
COL6A3-202ENST00000347401 GPRC5CQ9NQ84 441 aa13.15□□□□□ -0.3
COL6A3-202ENST00000347401 SPATA7Q9P0W8 599 aa13.15□□□□□ -0.3
COL6A3-202ENST00000347401 C1QTNF3-AMACRE9PGA6 284 aa13.15□□□□□ -0.3
COL6A3-202ENST00000347401 TDGQ13569 410 aa13.15□□□□□ -0.3
COL6A3-202ENST00000347401 DEFB106AQ8N104 65 aa13.15□□□□□ -0.3
COL6A3-202ENST00000347401 TSPEARQ8WU66 669 aa13.15□□□□□ -0.3
COL6A3-202ENST00000347401 ELMO3Q96BJ8 720 aa13.15□□□□□ -0.3
COL6A3-202ENST00000347401 POLR3HQ9Y535 204 aaPredicted RBP13.15□□□□□ -0.3
COL6A3-202ENST00000347401 DLGAP1O14490 977 aa13.15□□□□□ -0.3
COL6A3-202ENST00000347401 KDM4BO94953 1096 aa13.15□□□□□ -0.3
COL6A3-202ENST00000347401 PGDP52209 483 aa13.15□□□□□ -0.3
COL6A3-202ENST00000347401 DNM1P34Q6PK57 102 aa13.15□□□□□ -0.3
COL6A3-202ENST00000347401 SAPCD2Q86UD0 394 aa13.15□□□□□ -0.3
COL6A3-202ENST00000347401 TRPM4Q8TD43 1214 aa13.15□□□□□ -0.3
COL6A3-202ENST00000347401 MYOZ2Q9NPC6 264 aa13.15□□□□□ -0.3
COL6A3-202ENST00000347401 HPF1Q9NWY4 346 aa13.15□□□□□ -0.3
COL6A3-202ENST00000347401 ZIM2Q9NZV7 527 aa13.15□□□□□ -0.3
COL6A3-202ENST00000347401 PABPC4LP0CB38 370 aaKnown RBP13.15□□□□□ -0.3
COL6A3-202ENST00000347401 EEFSECP57772 596 aaKnown RBP13.15□□□□□ -0.3
COL6A3-202ENST00000347401 TFAP2DQ7Z6R9 452 aa13.15□□□□□ -0.3
COL6A3-202ENST00000347401 NEK7Q8TDX7 302 aa13.15□□□□□ -0.3
COL6A3-202ENST00000347401 COPS8Q99627 209 aa13.15□□□□□ -0.3
COL6A3-202ENST00000347401 ADAMTS10Q9H324 1103 aa13.15□□□□□ -0.3
COL6A3-202ENST00000347401 ACTR3BQ9P1U1 418 aa13.15□□□□□ -0.3
COL6A3-202ENST00000347401 FKBP7Q9Y680 259 aa13.15□□□□□ -0.3
COL6A3-202ENST00000347401 RPP40O75818 363 aaKnown RBP13.15□□□□□ -0.3
COL6A3-202ENST00000347401 POMCP01189 267 aa13.15□□□□□ -0.3
COL6A3-202ENST00000347401 CD36P16671 472 aa13.15□□□□□ -0.3
COL6A3-202ENST00000347401 S100PP25815 95 aa13.15□□□□□ -0.3
COL6A3-202ENST00000347401 NCCRP1Q6ZVX7 275 aaPredicted RBP13.15□□□□□ -0.3
COL6A3-202ENST00000347401 LRRN4CLQ8ND94 238 aa13.15□□□□□ -0.3
COL6A3-202ENST00000347401 PURBQ96QR8 312 aaKnown RBP13.15□□□□□ -0.3
COL6A3-202ENST00000347401 OR1I1O60431 355 aa13.15□□□□□ -0.3
COL6A3-202ENST00000347401 HOXD8P13378 290 aaPredicted RBP13.15□□□□□ -0.3
COL6A3-202ENST00000347401 KHKP50053 298 aa13.15□□□□□ -0.3
COL6A3-202ENST00000347401 CDKL1Q00532 357 aa13.15□□□□□ -0.3
COL6A3-202ENST00000347401 ITPAQ9BY32 194 aa13.15□□□□□ -0.3
COL6A3-202ENST00000347401 TNFSF13BQ9Y275 285 aa13.15□□□□□ -0.3
COL6A3-202ENST00000347401 ADGRB1O14514 1584 aa13.15□□□□□ -0.31
COL6A3-202ENST00000347401 MAGEB17A8MXT2 336 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms