RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 LMAN2Q12907 356 aa19.08■□□□□ 0.64
COL9A3-201ENST00000343916 GTF2H2Q13888 395 aa19.08■□□□□ 0.64
COL9A3-201ENST00000343916 PHKG1Q16816 387 aa19.08■□□□□ 0.64
COL9A3-201ENST00000343916 GTF2H2CQ6P1K8 395 aa19.08■□□□□ 0.64
COL9A3-201ENST00000343916 CERS6Q6ZMG9 384 aa19.08■□□□□ 0.64
COL9A3-201ENST00000343916 ZBTB49Q6ZSB9 765 aa19.08■□□□□ 0.64
COL9A3-201ENST00000343916 ADAMTSL2Q86TH1 951 aa19.08■□□□□ 0.64
COL9A3-201ENST00000343916 ZUFSPQ96AP4 578 aa19.08■□□□□ 0.64
COL9A3-201ENST00000343916 SLC2A11Q9BYW1 496 aa19.08■□□□□ 0.64
COL9A3-201ENST00000343916 MRPL17Q9NRX2 175 aaKnown RBP19.08■□□□□ 0.64
COL9A3-201ENST00000343916 RIC8BQ9NVN3 520 aa19.08■□□□□ 0.64
COL9A3-201ENST00000343916 ARMC1Q9NVT9 282 aa19.08■□□□□ 0.64
COL9A3-201ENST00000343916 ELOVL2Q9NXB9 296 aa19.08■□□□□ 0.64
COL9A3-201ENST00000343916 CFAP97Q9P2B7 532 aa19.08■□□□□ 0.64
COL9A3-201ENST00000343916 ZNF821O75541 412 aaPredicted RBP19.07■□□□□ 0.64
COL9A3-201ENST00000343916 LATS1O95835 1130 aa19.07■□□□□ 0.64
COL9A3-201ENST00000343916 GSK3BP49841 420 aa19.07■□□□□ 0.64
COL9A3-201ENST00000343916 NAA20P61599 178 aa19.07■□□□□ 0.64
COL9A3-201ENST00000343916 PRKCQQ04759 706 aa19.07■□□□□ 0.64
COL9A3-201ENST00000343916 ABRAXAS2Q15018 415 aa19.07■□□□□ 0.64
COL9A3-201ENST00000343916 COQ5Q5HYK3 327 aa19.07■□□□□ 0.64
COL9A3-201ENST00000343916 ERMP1Q7Z2K6 904 aa19.07■□□□□ 0.64
COL9A3-201ENST00000343916 CHERPQ8IWX8 916 aaKnown RBP19.07■□□□□ 0.64
COL9A3-201ENST00000343916 HS6ST3Q8IZP7 471 aa19.07■□□□□ 0.64
COL9A3-201ENST00000343916 AHI1Q8N157 1196 aa19.07■□□□□ 0.64
COL9A3-201ENST00000343916 TMEM199Q8N511 208 aa19.07■□□□□ 0.64
COL9A3-201ENST00000343916 METTL25Q8N6Q8 603 aa19.07■□□□□ 0.64
COL9A3-201ENST00000343916 PDLIM5Q96HC4 596 aaKnown RBP19.07■□□□□ 0.64
COL9A3-201ENST00000343916 SMG9Q9H0W8 520 aaKnown RBP19.07■□□□□ 0.64
COL9A3-201ENST00000343916 RNF208Q9H0X6 261 aa19.07■□□□□ 0.64
COL9A3-201ENST00000343916 IPPKQ9H8X2 491 aa19.07■□□□□ 0.64
COL9A3-201ENST00000343916 PAK6Q9NQU5 681 aaPredicted RBP19.07■□□□□ 0.64
COL9A3-201ENST00000343916 ACTR3BQ9P1U1 418 aa19.07■□□□□ 0.64
COL9A3-201ENST00000343916 RNF11Q9Y3C5 154 aa19.07■□□□□ 0.64
COL9A3-201ENST00000343916 ZFC3H1O60293 1989 aaKnown RBP19.07■□□□□ 0.64
COL9A3-201ENST00000343916 PDLIM1O00151 329 aa19.07■□□□□ 0.64
COL9A3-201ENST00000343916 EEDO75530 441 aaKnown RBP19.07■□□□□ 0.64
COL9A3-201ENST00000343916 STK19P49842 368 aaPredicted RBP19.07■□□□□ 0.64
COL9A3-201ENST00000343916 CREB5Q02930 508 aa19.07■□□□□ 0.64
COL9A3-201ENST00000343916 PCBP2Q15366 365 aaKnown RBP eCLIP19.07■□□□□ 0.642e-6■■■■□ 20.4
COL9A3-201ENST00000343916 CHRNA6Q15825 494 aa19.07■□□□□ 0.64
COL9A3-201ENST00000343916 LARP7Q4G0J3 582 aaKnown RBP eCLIP19.07■□□□□ 0.64
COL9A3-201ENST00000343916 DGKKQ5KSL6 1271 aa19.07■□□□□ 0.64
COL9A3-201ENST00000343916 SLC2A7Q6PXP3 512 aa19.07■□□□□ 0.64
COL9A3-201ENST00000343916 SLC39A5Q6ZMH5 540 aa19.07■□□□□ 0.64
COL9A3-201ENST00000343916 ANKRD33Q7Z3H0 272 aa19.07■□□□□ 0.64
COL9A3-201ENST00000343916 SNX20Q7Z614 316 aa19.07■□□□□ 0.64
COL9A3-201ENST00000343916 RBFAQ8N0V3 343 aa19.07■□□□□ 0.64
COL9A3-201ENST00000343916 TRIM54Q9BYV2 358 aa19.07■□□□□ 0.64
COL9A3-201ENST00000343916 GRIP2Q9C0E4 1043 aa19.07■□□□□ 0.64
COL9A3-201ENST00000343916 SUN2Q9UH99 717 aa19.07■□□□□ 0.64
COL9A3-201ENST00000343916 INTS6Q9UL03 887 aaKnown RBP19.07■□□□□ 0.64
COL9A3-201ENST00000343916 ST14Q9Y5Y6 855 aa19.07■□□□□ 0.64
COL9A3-201ENST00000343916 INPP4BO15327 924 aa19.06■□□□□ 0.64
COL9A3-201ENST00000343916 TAPBPO15533 448 aa19.06■□□□□ 0.64
COL9A3-201ENST00000343916 HTRA2O43464 458 aaPredicted RBP19.06■□□□□ 0.64
COL9A3-201ENST00000343916 G6PDP11413 515 aa19.06■□□□□ 0.64
COL9A3-201ENST00000343916 ITGALP20701 1170 aa19.06■□□□□ 0.64
COL9A3-201ENST00000343916 CTSOP43234 321 aaPredicted RBP19.06■□□□□ 0.64
COL9A3-201ENST00000343916 PLIN5Q00G26 463 aa19.06■□□□□ 0.64
COL9A3-201ENST00000343916 LIPEQ05469 1076 aa19.06■□□□□ 0.64
COL9A3-201ENST00000343916 BNIP2Q12982 314 aa19.06■□□□□ 0.64
COL9A3-201ENST00000343916 NR6A1Q15406 480 aa19.06■□□□□ 0.64
COL9A3-201ENST00000343916 CDKN3Q16667 212 aa19.06■□□□□ 0.64
COL9A3-201ENST00000343916 PDCD4Q53EL6 469 aaKnown RBP19.06■□□□□ 0.64
COL9A3-201ENST00000343916 LCN8Q6JVE9 175 aa19.06■□□□□ 0.64
COL9A3-201ENST00000343916 EGFL8Q99944 293 aa19.06■□□□□ 0.64
COL9A3-201ENST00000343916 HERC2P3Q9BVR0 1158 aa19.06■□□□□ 0.64
COL9A3-201ENST00000343916 CRLS1Q9UJA2 301 aa19.06■□□□□ 0.64
COL9A3-201ENST00000343916 GNPTGQ9UJJ9 305 aa19.06■□□□□ 0.64
COL9A3-201ENST00000343916 OBSL1O75147 1896 aa19.06■□□□□ 0.64
COL9A3-201ENST00000343916 DOCK6Q96HP0 2047 aa19.06■□□□□ 0.64
COL9A3-201ENST00000343916 GLYATL1P3A0A0U1RQE8 302 aa19.06■□□□□ 0.64
COL9A3-201ENST00000343916 ARHGAP10A1A4S6 786 aa19.06■□□□□ 0.64
COL9A3-201ENST00000343916 AQP12BA6NM10 295 aa19.06■□□□□ 0.64
COL9A3-201ENST00000343916 ACRV1P26436 265 aa19.06■□□□□ 0.64
COL9A3-201ENST00000343916 CYP51A1Q16850 503 aa19.06■□□□□ 0.64
COL9A3-201ENST00000343916 RFTN2Q52LD8 501 aaPredicted RBP19.06■□□□□ 0.64
COL9A3-201ENST00000343916 NANOGP8Q6NSW7 305 aa19.06■□□□□ 0.64
COL9A3-201ENST00000343916 CNKSR3Q6P9H4 555 aa19.06■□□□□ 0.64
COL9A3-201ENST00000343916 AQP12AQ8IXF9 295 aa19.06■□□□□ 0.64
COL9A3-201ENST00000343916 ADGRG2Q8IZP9 1017 aa19.06■□□□□ 0.64
COL9A3-201ENST00000343916 GRIN3AQ8TCU5 1115 aa19.06■□□□□ 0.64
COL9A3-201ENST00000343916 TSPEARQ8WU66 669 aa19.06■□□□□ 0.64
COL9A3-201ENST00000343916 ZNF689Q96CS4 500 aaPredicted RBP19.06■□□□□ 0.64
COL9A3-201ENST00000343916 MPP4Q96JB8 637 aa19.06■□□□□ 0.64
COL9A3-201ENST00000343916 KCTD14Q9BQ13 255 aaPredicted RBP19.06■□□□□ 0.64
COL9A3-201ENST00000343916 TMEM79Q9BSE2 394 aa19.06■□□□□ 0.64
COL9A3-201ENST00000343916 ZNF696Q9H7X3 374 aa19.06■□□□□ 0.64
COL9A3-201ENST00000343916 NANOGQ9H9S0 305 aa19.06■□□□□ 0.64
COL9A3-201ENST00000343916 LEF1Q9UJU2 399 aaPredicted RBP19.06■□□□□ 0.64
COL9A3-201ENST00000343916 TMCO1Q9UM00 188 aa19.06■□□□□ 0.64
COL9A3-201ENST00000343916 NPIPB15A6NHN6 443 aaPredicted RBP19.05■□□□□ 0.64
COL9A3-201ENST00000343916 PLOD2O00469 737 aa19.05■□□□□ 0.64
COL9A3-201ENST00000343916 FFAR3O14843 346 aa19.05■□□□□ 0.64
COL9A3-201ENST00000343916 RAD51BO15315 384 aa19.05■□□□□ 0.64
COL9A3-201ENST00000343916 GPR42O15529 346 aa19.05■□□□□ 0.64
COL9A3-201ENST00000343916 S100BP04271 92 aaPredicted RBP19.05■□□□□ 0.64
COL9A3-201ENST00000343916 PSMA4P25789 261 aaKnown RBP19.05■□□□□ 0.64
COL9A3-201ENST00000343916 FOXM1Q08050 763 aa19.05■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms