RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 MKRN2Q9H000 416 aaKnown RBP1.5□□□□□ -2.17
LINC00643-201ENST00000334389 GBP3Q9H0R5 595 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 XYLT2Q9H1B5 865 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 ZNF385DQ9H6B1 395 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 OLAHQ9NV23 265 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 DNAJB12Q9NXW2 375 aaKnown RBP1.5□□□□□ -2.17
LINC00643-201ENST00000334389 PLA2G3Q9NZ20 509 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 HCN3Q9P1Z3 774 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 DNHD1Q96M86 4753 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 PCLOQ9Y6V0 5065 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 ARPC4-TTLL3A0A0A6YYG9 625 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 OR5H15A6NDH6 313 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 RNF212BA8MTL3 300 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 POC1B-GALNT4F8VUJ3 575 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 KLRC4-KLRK1H3BQV0 150 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 HS3ST1O14792 307 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 FGF10O15520 208 aaPredicted RBP1.5□□□□□ -2.17
LINC00643-201ENST00000334389 KDELR3O43731 214 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 TRAF3IP2O43734 574 aaPredicted RBP1.5□□□□□ -2.17
LINC00643-201ENST00000334389 LMX1BO60663 402 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 SRPX2O60687 465 aaPredicted RBP1.5□□□□□ -2.17
LINC00643-201ENST00000334389 DNAJB5O75953 348 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 MATN4O95460 622 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 ZBTB11O95625 1053 aaPredicted RBP1.5□□□□□ -2.17
LINC00643-201ENST00000334389 POP4O95707 220 aaKnown RBP1.5□□□□□ -2.17
LINC00643-201ENST00000334389 VTNP04004 478 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 CENPBP07199 599 aaPredicted RBP1.5□□□□□ -2.17
LINC00643-201ENST00000334389 ADRB3P13945 408 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 CSF2RBP32927 897 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 SLC11A2P49281 568 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 CHN2P52757 468 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 TERF1P54274 439 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 CSE1LP55060 971 aaKnown RBP1.5□□□□□ -2.17
LINC00643-201ENST00000334389 LOXL3P58215 753 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 PPP2R2BQ00005 443 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 LCP2Q13094 533 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 NEUROD1Q13562 356 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 FHL3Q13643 280 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 BOP1Q14137 746 aaKnown RBP1.5□□□□□ -2.17
LINC00643-201ENST00000334389 KYNUQ16719 465 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 TMEM44Q2T9K0 475 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 HFEQ30201 348 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 MINDY4Q4G0A6 757 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 CPZQ66K79 652 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 GUSBP11Q6P575 273 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 PACS1Q6VY07 963 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 MEX3BQ6ZN04 569 aaKnown RBP1.5□□□□□ -2.17
LINC00643-201ENST00000334389 THAP5Q7Z6K1 395 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 USP37Q86T82 979 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 PIM3Q86V86 326 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 DNAAF5Q86Y56 855 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 UMODL1-AS1Q8N2C9 162 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 GALNT4Q8N4A0 578 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 DNAJC22Q8N4W6 341 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 AFAP1L2Q8N4X5 818 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 TTC16Q8NEE8 873 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 FLVCR1-AS1Q8TAF5 88 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 TMEM163Q8TC26 289 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 ZNF507Q8TCN5 953 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 HOXB13Q92826 284 aaPredicted RBP1.5□□□□□ -2.17
LINC00643-201ENST00000334389 RCC1LQ96I51 464 aaKnown RBP1.5□□□□□ -2.17
LINC00643-201ENST00000334389 PNMA5Q96PV4 448 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 UBAC1Q9BSL1 405 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 TMEM121Q9BTD3 319 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 APOOQ9BUR5 198 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 CDADC1Q9BWV3 514 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 B3GNT5Q9BYG0 378 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 ZNF518BQ9C0D4 1074 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 EVA1AQ9H8M9 152 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 ZNF160Q9HCG1 818 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 SPTLC3Q9NUV7 552 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 INTS13Q9NVM9 706 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 CFAP97Q9P2B7 532 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 TINAGQ9UJW2 476 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 AGO1Q9UL18 857 aaKnown RBP1.5□□□□□ -2.17
LINC00643-201ENST00000334389 BRPF3Q9ULD4 1205 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 CCL26Q9Y258 94 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 EFR3BQ9Y2G0 817 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 MMACHCQ9Y4U1 282 aa1.5□□□□□ -2.17
LINC00643-201ENST00000334389 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP1.5□□□□□ -2.17
LINC00643-201ENST00000334389 ERICH2A1L162 156 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 TYW5A2RUC4 315 aaKnown RBP1.49□□□□□ -2.17
LINC00643-201ENST00000334389 M0QZ24 198 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 YY2O15391 372 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 EXOC3O60645 756 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 URI1O94763 535 aaPredicted RBP1.49□□□□□ -2.17
LINC00643-201ENST00000334389 C1QBP02746 253 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 ABCB1P08183 1280 aaPredicted RBP1.49□□□□□ -2.17
LINC00643-201ENST00000334389 ZNF17P17021 662 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 SYT1P21579 422 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 FKBP2P26885 142 aaKnown RBP1.49□□□□□ -2.17
LINC00643-201ENST00000334389 ANP32AP39687 249 aaKnown RBP1.49□□□□□ -2.17
LINC00643-201ENST00000334389 GLIPR1P48060 266 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 HLCSP50747 726 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 DYNLT3P51808 116 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 CSNK1G2P78368 415 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 HSD11B2P80365 405 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 DAB2P98082 770 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 GUCY2DQ02846 1103 aa1.49□□□□□ -2.17
LINC00643-201ENST00000334389 DEUP1Q05D60 604 aa1.49□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms