RNA–Protein interactions for RNA: ENST00000328923.7

SHMT2-201, Transcript of serine hydroxymethyltransferase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT2, Length 2,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-201ENST00000328923 PAMR1Q6UXH9 720 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 NLRP8Q86W28 1048 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 OR8H2Q8N162 312 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 TMEM199Q8N511 208 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 WDTC1Q8N5D0 677 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 MCPH1Q8NEM0 835 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 HMGCLL1Q8TB92 370 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 UFD1Q92890 307 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 TSEN34Q9BSV6 310 aaKnown RBP11.71□□□□□ -0.53
SHMT2-201ENST00000328923 SPATA9Q9BWV2 254 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 ILKAPQ9H0C8 392 aaPredicted RBP11.71□□□□□ -0.53
SHMT2-201ENST00000328923 RANBP3Q9H6Z4 567 aaPredicted RBP11.71□□□□□ -0.53
SHMT2-201ENST00000328923 SARDHQ9UL12 918 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 AGO1Q9UL18 857 aaKnown RBP11.71□□□□□ -0.53
SHMT2-201ENST00000328923 USP22Q9UPT9 525 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 PCDHGA9Q9Y5G4 932 aaKnown RBP11.71□□□□□ -0.53
SHMT2-201ENST00000328923 U3KQV3 271 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 WDR81Q562E7 1941 aa11.71□□□□□ -0.54
SHMT2-201ENST00000328923 DOCK1Q14185 1865 aa11.71□□□□□ -0.54
SHMT2-201ENST00000328923 ATP6AP2A0A1C7CYW4 349 aa11.7□□□□□ -0.54
SHMT2-201ENST00000328923 BCLAF3A2AJT9 711 aaKnown RBP11.7□□□□□ -0.54
SHMT2-201ENST00000328923 GMDSO60547 372 aa11.7□□□□□ -0.54
SHMT2-201ENST00000328923 H2AFYO75367 372 aaKnown RBP11.7□□□□□ -0.54
SHMT2-201ENST00000328923 RGS20O76081 388 aa11.7□□□□□ -0.54
SHMT2-201ENST00000328923 PIGRP01833 764 aa11.7□□□□□ -0.54
SHMT2-201ENST00000328923 HSMCR30P0CW71 290 aa11.7□□□□□ -0.54
SHMT2-201ENST00000328923 RFC2P35250 354 aa11.7□□□□□ -0.54
SHMT2-201ENST00000328923 LIG4P49917 911 aa11.7□□□□□ -0.54
SHMT2-201ENST00000328923 WNT7BP56706 349 aa11.7□□□□□ -0.54
SHMT2-201ENST00000328923 SEMA3BQ13214 749 aa11.7□□□□□ -0.54
SHMT2-201ENST00000328923 STXBP2Q15833 593 aa11.7□□□□□ -0.54
SHMT2-201ENST00000328923 ZNF124Q15973 351 aa11.7□□□□□ -0.54
SHMT2-201ENST00000328923 XKRXQ6PP77 449 aa11.7□□□□□ -0.54
SHMT2-201ENST00000328923 TAS1R3Q7RTX0 852 aa11.7□□□□□ -0.54
SHMT2-201ENST00000328923 FAM35AQ86V20 835 aa11.7□□□□□ -0.54
SHMT2-201ENST00000328923 TCTE3Q8IZS6 198 aa11.7□□□□□ -0.54
SHMT2-201ENST00000328923 ZNF366Q8N895 744 aa11.7□□□□□ -0.54
SHMT2-201ENST00000328923 KDM1BQ8NB78 822 aa11.7□□□□□ -0.54
SHMT2-201ENST00000328923 TMCO6Q96DC7 493 aa11.7□□□□□ -0.54
SHMT2-201ENST00000328923 SLC47A1Q96FL8 570 aa11.7□□□□□ -0.54
SHMT2-201ENST00000328923 SH2D3AQ9BRG2 576 aa11.7□□□□□ -0.54
SHMT2-201ENST00000328923 MS4A7Q9GZW8 240 aaPredicted RBP11.7□□□□□ -0.54
SHMT2-201ENST00000328923 LHX5Q9H2C1 402 aa11.7□□□□□ -0.54
SHMT2-201ENST00000328923 TSR3Q9UJK0 312 aaKnown RBP11.7□□□□□ -0.54
SHMT2-201ENST00000328923 MAGED1Q9Y5V3 778 aaPredicted RBP11.7□□□□□ -0.54
SHMT2-201ENST00000328923 A0A0B4J293 547 aa11.7□□□□□ -0.54
SHMT2-201ENST00000328923 DFFAO00273 331 aa11.7□□□□□ -0.54
SHMT2-201ENST00000328923 XPNPEP2O43895 674 aa11.7□□□□□ -0.54
SHMT2-201ENST00000328923 SRP72O76094 671 aaKnown RBP11.7□□□□□ -0.54
SHMT2-201ENST00000328923 MED26O95402 600 aa11.7□□□□□ -0.54
SHMT2-201ENST00000328923 TRUB2O95900 331 aaKnown RBP11.7□□□□□ -0.54
SHMT2-201ENST00000328923 ASS1P00966 412 aaKnown RBP11.7□□□□□ -0.54
SHMT2-201ENST00000328923 FTH1P02794 183 aa11.7□□□□□ -0.54
SHMT2-201ENST00000328923 KCNA5P22460 613 aa11.7□□□□□ -0.54
SHMT2-201ENST00000328923 ACVR2AP27037 513 aa11.7□□□□□ -0.54
SHMT2-201ENST00000328923 ATP5OP48047 213 aa11.7□□□□□ -0.54
SHMT2-201ENST00000328923 CD47Q08722 323 aa11.7□□□□□ -0.54
SHMT2-201ENST00000328923 GRIK2Q13002 908 aa11.7□□□□□ -0.54
SHMT2-201ENST00000328923 BAMBIQ13145 260 aa11.7□□□□□ -0.54
SHMT2-201ENST00000328923 PYCR3Q53H96 274 aa11.7□□□□□ -0.54
SHMT2-201ENST00000328923 TAF2Q6P1X5 1199 aa11.7□□□□□ -0.54
SHMT2-201ENST00000328923 FAM124AQ86V42 546 aa11.7□□□□□ -0.54
SHMT2-201ENST00000328923 RASGRP3Q8IV61 690 aa11.7□□□□□ -0.54
SHMT2-201ENST00000328923 KIAA0319LQ8IZA0 1049 aa11.7□□□□□ -0.54
SHMT2-201ENST00000328923 TRPV3Q8NET8 790 aa11.7□□□□□ -0.54
SHMT2-201ENST00000328923 OR8K5Q8NH50 307 aa11.7□□□□□ -0.54
SHMT2-201ENST00000328923 RNF31Q96EP0 1072 aa11.7□□□□□ -0.54
SHMT2-201ENST00000328923 MAGEB10Q96LZ2 347 aaPredicted RBP11.7□□□□□ -0.54
SHMT2-201ENST00000328923 NAT9Q9BTE0 207 aa11.7□□□□□ -0.54
SHMT2-201ENST00000328923 ACAD9Q9H845 621 aa11.7□□□□□ -0.54
SHMT2-201ENST00000328923 MRM3Q9HC36 420 aaKnown RBP11.7□□□□□ -0.54
SHMT2-201ENST00000328923 PCDHB16Q9NRJ7 776 aa11.7□□□□□ -0.54
SHMT2-201ENST00000328923 INTS10Q9NVR2 710 aaKnown RBP11.7□□□□□ -0.54
SHMT2-201ENST00000328923 INTS6Q9UL03 887 aaKnown RBP11.7□□□□□ -0.54
SHMT2-201ENST00000328923 GINS2Q9Y248 185 aa11.7□□□□□ -0.54
SHMT2-201ENST00000328923 NAALAD2Q9Y3Q0 740 aa11.7□□□□□ -0.54
SHMT2-201ENST00000328923 SLC1A7O00341 560 aa11.69□□□□□ -0.54
SHMT2-201ENST00000328923 EEF2KO00418 725 aaKnown RBP11.69□□□□□ -0.54
SHMT2-201ENST00000328923 LTFP02788 710 aa11.69□□□□□ -0.54
SHMT2-201ENST00000328923 F8A1P23610 371 aa11.69□□□□□ -0.54
SHMT2-201ENST00000328923 MIPP30301 263 aa11.69□□□□□ -0.54
SHMT2-201ENST00000328923 YWHAEP62258 255 aaKnown RBP11.69□□□□□ -0.54
SHMT2-201ENST00000328923 MTMR1Q13613 665 aa11.69□□□□□ -0.54
SHMT2-201ENST00000328923 CYP27C1Q4G0S4 372 aa11.69□□□□□ -0.54
SHMT2-201ENST00000328923 ZNF484Q5JVG2 852 aa11.69□□□□□ -0.54
SHMT2-201ENST00000328923 ALG1LQ6GMV1 187 aa11.69□□□□□ -0.54
SHMT2-201ENST00000328923 GLYATQ6IB77 296 aa11.69□□□□□ -0.54
SHMT2-201ENST00000328923 SLFN12LQ6IEE8 588 aa11.69□□□□□ -0.54
SHMT2-201ENST00000328923 ZNF534Q76KX8 674 aa11.69□□□□□ -0.54
SHMT2-201ENST00000328923 RBM23Q86U06 439 aaKnown RBP11.69□□□□□ -0.54
SHMT2-201ENST00000328923 MPP5Q8N3R9 675 aa11.69□□□□□ -0.54
SHMT2-201ENST00000328923 JOSD2Q8TAC2 188 aa11.69□□□□□ -0.54
SHMT2-201ENST00000328923 TEX47Q8TBZ9 253 aa11.69□□□□□ -0.54
SHMT2-201ENST00000328923 CLEC4DQ8WXI8 215 aa11.69□□□□□ -0.54
SHMT2-201ENST00000328923 NCLNQ969V3 563 aa11.69□□□□□ -0.54
SHMT2-201ENST00000328923 LRRC4Q9HBW1 653 aa11.69□□□□□ -0.54
SHMT2-201ENST00000328923 XPNPEP3Q9NQH7 507 aa11.69□□□□□ -0.54
SHMT2-201ENST00000328923 SDHAF3Q9NRP4 125 aa11.69□□□□□ -0.54
SHMT2-201ENST00000328923 CCDC167Q9P0B6 97 aa11.69□□□□□ -0.54
SHMT2-201ENST00000328923 ERVK-18Q9QC07 812 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms