RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 WWP1Q9H0M0 922 aa19.12■□□□□ 0.65
LIME1-201ENST00000309546 FAM96AQ9H5X1 160 aa19.12■□□□□ 0.65
LIME1-201ENST00000309546 TMEM184BQ9Y519 407 aaPredicted RBP19.12■□□□□ 0.65
LIME1-201ENST00000309546 CFAP20Q9Y6A4 193 aaKnown RBP19.12■□□□□ 0.65
LIME1-201ENST00000309546 DNMT3AQ9Y6K1 912 aaPredicted RBP19.12■□□□□ 0.65
LIME1-201ENST00000309546 ZNF462Q96JM2 2506 aa19.11■□□□□ 0.65
LIME1-201ENST00000309546 ZNF891A8MT65 544 aaPredicted RBP19.11■□□□□ 0.65
LIME1-201ENST00000309546 CCL22O00626 93 aa19.11■□□□□ 0.65
LIME1-201ENST00000309546 TOX3O15405 576 aaPredicted RBP19.11■□□□□ 0.65
LIME1-201ENST00000309546 PPP1CAP62136 330 aa19.11■□□□□ 0.65
LIME1-201ENST00000309546 PDE1BQ01064 536 aa19.11■□□□□ 0.65
LIME1-201ENST00000309546 PRICKLE2Q7Z3G6 844 aa19.11■□□□□ 0.65
LIME1-201ENST00000309546 PRSS42Q7Z5A4 293 aa19.11■□□□□ 0.65
LIME1-201ENST00000309546 TMEM139Q8IV31 216 aa19.11■□□□□ 0.65
LIME1-201ENST00000309546 RASGRP3Q8IV61 690 aa19.11■□□□□ 0.65
LIME1-201ENST00000309546 TXLNBQ8N3L3 684 aa19.11■□□□□ 0.65
LIME1-201ENST00000309546 FAM71DQ8N9W8 422 aa19.11■□□□□ 0.65
LIME1-201ENST00000309546 DCUN1D1Q96GG9 259 aa19.11■□□□□ 0.65
LIME1-201ENST00000309546 SPRY4Q9C004 299 aa19.11■□□□□ 0.65
LIME1-201ENST00000309546 HEMK1Q9Y5R4 338 aaPredicted RBP19.11■□□□□ 0.65
LIME1-201ENST00000309546 PIEZO2Q9H5I5 2752 aa19.11■□□□□ 0.65
LIME1-201ENST00000309546 MGAT4DA6NG13 374 aa19.1■□□□□ 0.65
LIME1-201ENST00000309546 MIF4GDA9UHW6 222 aaKnown RBP19.1■□□□□ 0.65
LIME1-201ENST00000309546 J3QKU1 62 aa19.1■□□□□ 0.65
LIME1-201ENST00000309546 SLC28A2O43868 658 aa19.1■□□□□ 0.65
LIME1-201ENST00000309546 ZNF189O75820 626 aaPredicted RBP19.1■□□□□ 0.65
LIME1-201ENST00000309546 DLGAP3O95886 979 aa19.1■□□□□ 0.65
LIME1-201ENST00000309546 PRKAR1AP10644 381 aa19.1■□□□□ 0.65
LIME1-201ENST00000309546 MTHFD1P11586 935 aaKnown RBP19.1■□□□□ 0.65
LIME1-201ENST00000309546 ITGALP20701 1170 aa19.1■□□□□ 0.65
LIME1-201ENST00000309546 ZNF140P52738 457 aaPredicted RBP19.1■□□□□ 0.65
LIME1-201ENST00000309546 XIAPP98170 497 aa19.1■□□□□ 0.65
LIME1-201ENST00000309546 XKR5Q6UX68 686 aa19.1■□□□□ 0.65
LIME1-201ENST00000309546 TAB3Q8N5C8 712 aaPredicted RBP19.1■□□□□ 0.65
LIME1-201ENST00000309546 TTC13Q8NBP0 860 aa19.1■□□□□ 0.65
LIME1-201ENST00000309546 ULK4Q96C45 1275 aa19.1■□□□□ 0.65
LIME1-201ENST00000309546 C12orf66Q96MD2 445 aa19.1■□□□□ 0.65
LIME1-201ENST00000309546 FAM117AQ9C073 453 aa19.1■□□□□ 0.65
LIME1-201ENST00000309546 TRIT1Q9H3H1 467 aaKnown RBP19.1■□□□□ 0.65
LIME1-201ENST00000309546 PYCARD-AS1I3L0S3 204 aa19.09■□□□□ 0.65
LIME1-201ENST00000309546 SLC35G4P0C7Q5 338 aa19.09■□□□□ 0.65
LIME1-201ENST00000309546 RALBP11234 206 aa19.09■□□□□ 0.65
LIME1-201ENST00000309546 ZNF28P17035 718 aa19.09■□□□□ 0.65
LIME1-201ENST00000309546 HADHAP40939 763 aa19.09■□□□□ 0.65
LIME1-201ENST00000309546 ABHD18Q0P651 414 aa19.09■□□□□ 0.65
LIME1-201ENST00000309546 MSLNQ13421 630 aaPredicted RBP19.09■□□□□ 0.65
LIME1-201ENST00000309546 SEPT6Q14141 434 aa19.09■□□□□ 0.65
LIME1-201ENST00000309546 BCL7AQ4VC05 210 aa19.09■□□□□ 0.65
LIME1-201ENST00000309546 METRNLQ641Q3 311 aa19.09■□□□□ 0.65
LIME1-201ENST00000309546 DENND5AQ6IQ26 1287 aa19.09■□□□□ 0.65
LIME1-201ENST00000309546 KLHL35Q6PF15 583 aa19.09■□□□□ 0.65
LIME1-201ENST00000309546 BORAQ6PGQ7 559 aa19.09■□□□□ 0.65
LIME1-201ENST00000309546 ESX1Q8N693 406 aa19.09■□□□□ 0.65
LIME1-201ENST00000309546 OR2L2Q8NH16 312 aa19.09■□□□□ 0.65
LIME1-201ENST00000309546 SLC45A3Q96JT2 553 aa19.09■□□□□ 0.65
LIME1-201ENST00000309546 DNAJC1Q96KC8 554 aaKnown RBP19.09■□□□□ 0.65
LIME1-201ENST00000309546 INSM2Q96T92 566 aaPredicted RBP19.09■□□□□ 0.65
LIME1-201ENST00000309546 EFHD1Q9BUP0 239 aa19.09■□□□□ 0.65
LIME1-201ENST00000309546 CFAP46Q8IYW2 2715 aa19.09■□□□□ 0.65
LIME1-201ENST00000309546 CFAP99D6REC4 459 aa19.08■□□□□ 0.64
LIME1-201ENST00000309546 NKX2-8O15522 239 aa19.08■□□□□ 0.64
LIME1-201ENST00000309546 DDX3YO15523 660 aaKnown RBP19.08■□□□□ 0.64
LIME1-201ENST00000309546 POLBP06746 335 aa19.08■□□□□ 0.64
LIME1-201ENST00000309546 MC4RP32245 332 aa19.08■□□□□ 0.64
LIME1-201ENST00000309546 GDF10P55107 478 aa19.08■□□□□ 0.64
LIME1-201ENST00000309546 NFKB2Q00653 900 aa19.08■□□□□ 0.64
LIME1-201ENST00000309546 GSE1Q14687 1217 aa19.08■□□□□ 0.64
LIME1-201ENST00000309546 ZRANB3Q5FWF4 1079 aa19.08■□□□□ 0.64
LIME1-201ENST00000309546 MICALCLQ6ZW33 695 aa19.08■□□□□ 0.64
LIME1-201ENST00000309546 SNX20Q7Z614 316 aa19.08■□□□□ 0.64
LIME1-201ENST00000309546 NXPE1Q8N323 547 aa19.08■□□□□ 0.64
LIME1-201ENST00000309546 GALNT6Q8NCL4 622 aa19.08■□□□□ 0.64
LIME1-201ENST00000309546 SPDYE1Q8NFV5 336 aaPredicted RBP19.08■□□□□ 0.64
LIME1-201ENST00000309546 KLHL6Q8WZ60 621 aa19.08■□□□□ 0.64
LIME1-201ENST00000309546 COPS8Q99627 209 aa19.08■□□□□ 0.64
LIME1-201ENST00000309546 TMEM121Q9BTD3 319 aa19.08■□□□□ 0.64
LIME1-201ENST00000309546 EPHA6Q9UF33 1036 aa19.08■□□□□ 0.64
LIME1-201ENST00000309546 IL17BQ9UHF5 180 aa19.08■□□□□ 0.64
LIME1-201ENST00000309546 FEZ2Q9UHY8 353 aaPredicted RBP19.08■□□□□ 0.64
LIME1-201ENST00000309546 LNPEPQ9UIQ6 1025 aa19.08■□□□□ 0.64
LIME1-201ENST00000309546 R3HDM2Q9Y2K5 976 aaKnown RBP19.08■□□□□ 0.64
LIME1-201ENST00000309546 CAPN6Q9Y6Q1 641 aa19.08■□□□□ 0.64
LIME1-201ENST00000309546 LDB2O43679 373 aa19.07■□□□□ 0.64
LIME1-201ENST00000309546 KIAA0754O94854 1291 aa19.07■□□□□ 0.64
LIME1-201ENST00000309546 METTL18O95568 372 aa19.07■□□□□ 0.64
LIME1-201ENST00000309546 SFTPCP11686 197 aa19.07■□□□□ 0.64
LIME1-201ENST00000309546 TPH1P17752 444 aa19.07■□□□□ 0.64
LIME1-201ENST00000309546 STAT5AP42229 794 aa19.07■□□□□ 0.64
LIME1-201ENST00000309546 KLF1Q13351 362 aaPredicted RBP19.07■□□□□ 0.64
LIME1-201ENST00000309546 IL11RAQ14626 422 aa19.07■□□□□ 0.64
LIME1-201ENST00000309546 POU6F1Q14863 301 aa19.07■□□□□ 0.64
LIME1-201ENST00000309546 PARP6Q2NL67 630 aa19.07■□□□□ 0.64
LIME1-201ENST00000309546 P3H1Q32P28 736 aa19.07■□□□□ 0.64
LIME1-201ENST00000309546 DNTTIP2Q5QJE6 756 aaKnown RBP19.07■□□□□ 0.64
LIME1-201ENST00000309546 OOSP2Q86WS3 158 aa19.07■□□□□ 0.64
LIME1-201ENST00000309546 CFAP206Q8IYR0 622 aa19.07■□□□□ 0.64
LIME1-201ENST00000309546 LILRA3Q8N6C8 439 aaPredicted RBP19.07■□□□□ 0.64
LIME1-201ENST00000309546 SIDT2Q8NBJ9 832 aaKnown RBP19.07■□□□□ 0.64
LIME1-201ENST00000309546 STARD8Q92502 1023 aa19.07■□□□□ 0.64
LIME1-201ENST00000309546 STAMBPL1Q96FJ0 436 aa19.07■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms