RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 NCK2O43639 380 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 GATCO43716 136 aaKnown RBP4.79□□□□□ -1.64
CSMD3-201ENST00000297405 ACSL4O60488 711 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 MT-ND2P03891 347 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 TLX1P31314 330 aaPredicted RBP4.79□□□□□ -1.64
CSMD3-201ENST00000297405 RAB35Q15286 201 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 EMC10Q5UCC4 262 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 SLX4IPQ5VYV7 408 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 SYVN1Q86TM6 617 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 SATL1Q86VE3 508 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 POMGNT2Q8NAT1 580 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 C11orf65Q8NCR3 313 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 SGTBQ96EQ0 304 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 GFM1Q96RP9 751 aaKnown RBP4.79□□□□□ -1.64
CSMD3-201ENST00000297405 HINFPQ9BQA5 517 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 ALG13Q9NP73 1137 aaKnown RBP4.79□□□□□ -1.64
CSMD3-201ENST00000297405 GRIN2DO15399 1336 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 LATO43561 262 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 CD58P19256 250 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 RPL10P27635 214 aaKnown RBP4.79□□□□□ -1.64
CSMD3-201ENST00000297405 CHRNA6Q15825 494 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 RETREG3Q86VR2 466 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 ANKRD52Q8NB46 1076 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 CHFRQ96EP1 664 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 SAMD11Q96NU1 681 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 NUDT16L1Q9BRJ7 211 aaKnown RBP4.79□□□□□ -1.64
CSMD3-201ENST00000297405 LY9Q9HBG7 655 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 SLAMF7Q9NQ25 335 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 TAS2R10Q9NYW0 307 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 ACTR10Q9NZ32 417 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 TAF6LQ9Y6J9 622 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 TEX33O43247 280 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 OR1I1O60431 355 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 CHRNB2P17787 502 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 VAMP1P23763 118 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 HTR2BP41595 481 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 PRKXP51817 358 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 PCDH1Q08174 1060 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 TXNRD1Q16881 649 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 AP5B1Q2VPB7 878 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 EIPR1Q53HC9 387 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 OVOS1Q6IE37 1185 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 SLC22A25Q6T423 547 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 LRRC70Q7Z2Q7 622 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 TRABD2AQ86V40 505 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 HPS6Q86YV9 775 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 DAGLBQ8NCG7 672 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 FAM126AQ9BYI3 521 aaPredicted RBP4.79□□□□□ -1.64
CSMD3-201ENST00000297405 NMNAT1Q9HAN9 279 aaPredicted RBP4.79□□□□□ -1.64
CSMD3-201ENST00000297405 SLC22A11Q9NSA0 550 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 ZNF225Q9UK10 706 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 PCNX3Q9H6A9 2034 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 ANXA2P2A6NMY6 339 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 PDYNP01213 254 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 ANXA2P07355 339 aaKnown RBP4.79□□□□□ -1.64
CSMD3-201ENST00000297405 ACADMP11310 421 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 AOC1P19801 751 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 GADD45AP24522 165 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 RSU1Q15404 277 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 SLC39A4Q6P5W5 647 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 SLFN11Q7Z7L1 901 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 ZNF598Q86UK7 904 aaKnown RBP4.79□□□□□ -1.64
CSMD3-201ENST00000297405 OR1J4Q8NGS1 313 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 EEF2KMTQ96G04 330 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 PRMT8Q9NR22 394 aaPredicted RBP4.79□□□□□ -1.64
CSMD3-201ENST00000297405 OGDHLQ9ULD0 1010 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 UBR2Q8IWV8 1755 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 ZNF609O15014 1411 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 GXYLT2A0PJZ3 443 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 LRRN3E7EW58 273 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 ABL1P00519 1130 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 TRAPPC2P0DI81 140 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 TRAPPC2BP0DI82 140 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 CYP4B1P13584 511 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 ETS2P15036 469 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 GRK5P34947 590 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 RPS5P46782 204 aaKnown RBP4.79□□□□□ -1.64
CSMD3-201ENST00000297405 PRR5P85299 388 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 KCTD2Q14681 263 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 NAA30Q147X3 362 aaPredicted RBP4.79□□□□□ -1.64
CSMD3-201ENST00000297405 EARS2Q5JPH6 523 aaKnown RBP4.79□□□□□ -1.64
CSMD3-201ENST00000297405 SH3PXD2AQ5TCZ1 1133 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 PGM2L1Q6PCE3 622 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 BEND4Q6ZU67 534 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 NT5DC3Q86UY8 548 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 OR6Q1Q8NGQ2 317 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 TMEM203Q969S6 136 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 CELF4Q9BZC1 486 aaKnown RBP4.79□□□□□ -1.64
CSMD3-201ENST00000297405 LMAN2LQ9H0V9 348 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 LRRN3Q9H3W5 708 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 SLC35C2Q9NQQ7 365 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 AGPAT5Q9NUQ2 364 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 DPP3Q9NY33 737 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 ACTR3BQ9P1U1 418 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 CRLS1Q9UJA2 301 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 RIMKLBQ9ULI2 386 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 ROBO3Q96MS0 1386 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 ELOVL7A1L3X0 281 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 CLIC2O15247 247 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 FOXN1O15353 648 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms